RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 INHAP05111 366 aa14.04□□□□□ -0.16
SHROOM3-202ENST00000466541 FDX1P10109 184 aa14.04□□□□□ -0.16
SHROOM3-202ENST00000466541 CASTP20810 708 aaKnown RBP14.04□□□□□ -0.16
SHROOM3-202ENST00000466541 TRIM32Q13049 653 aa14.04□□□□□ -0.16
SHROOM3-202ENST00000466541 IRF5Q13568 498 aa14.04□□□□□ -0.16
SHROOM3-202ENST00000466541 GRB14Q14449 540 aa14.04□□□□□ -0.16
SHROOM3-202ENST00000466541 KCTD2Q14681 263 aa14.04□□□□□ -0.16
SHROOM3-202ENST00000466541 MTFR1Q15390 333 aa14.04□□□□□ -0.16
SHROOM3-202ENST00000466541 TSGA10IPQ3SY00 556 aa14.04□□□□□ -0.16
SHROOM3-202ENST00000466541 BTNL9Q6UXG8 535 aa14.04□□□□□ -0.16
SHROOM3-202ENST00000466541 DHX32Q7L7V1 743 aaKnown RBP14.04□□□□□ -0.16
SHROOM3-202ENST00000466541 ADGRF4Q8IZF3 695 aa14.04□□□□□ -0.16
SHROOM3-202ENST00000466541 ZNF654Q8IZM8 581 aa14.04□□□□□ -0.16
SHROOM3-202ENST00000466541 NPLOC4Q8TAT6 608 aa14.04□□□□□ -0.16
SHROOM3-202ENST00000466541 TMEM87BQ96K49 555 aa14.04□□□□□ -0.16
SHROOM3-202ENST00000466541 KLRF2D3W0D1 207 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 COBLO75128 1261 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 SEC24BO95487 1268 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 COPB2P35606 906 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 OAZ1P54368 228 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 UBXN2AP68543 259 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 GRM4Q14833 912 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 USH1GQ495M9 461 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 BLOC1S2Q6QNY1 142 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 ANKRD35Q8N283 1001 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 TRIB2Q92519 343 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 USP6NLQ92738 828 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 ARMC5Q96C12 935 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 DDX11Q96FC9 970 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 ZNF333Q96JL9 665 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 TRERF1Q96PN7 1200 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 APBA2Q99767 749 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 TMEM106CQ9BVX2 250 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 RANBP17Q9H2T7 1088 aaKnown RBP14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 RNF146Q9NTX7 359 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 MAD2L2Q9UI95 211 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 SLC12A7Q9Y666 1083 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 ZNF536O15090 1300 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 PLXNA1Q9UIW2 1896 aa14.03□□□□□ -0.16
SHROOM3-202ENST00000466541 ATP2A1O14983 1001 aa14.02□□□□□ -0.17
SHROOM3-202ENST00000466541 ICAM1P05362 532 aa14.02□□□□□ -0.17
SHROOM3-202ENST00000466541 HMGB1P09429 215 aaKnown RBP14.02□□□□□ -0.17
SHROOM3-202ENST00000466541 EXOSC10Q01780 885 aaKnown RBP14.02□□□□□ -0.17
SHROOM3-202ENST00000466541 CDC37Q16543 378 aaPredicted RBP14.02□□□□□ -0.17
SHROOM3-202ENST00000466541 MUM1L1Q5H9M0 696 aa14.02□□□□□ -0.17
SHROOM3-202ENST00000466541 SYNE3Q6ZMZ3 975 aa14.02□□□□□ -0.17
SHROOM3-202ENST00000466541 Q6ZUG5 572 aa14.02□□□□□ -0.17
SHROOM3-202ENST00000466541 HOMER1Q86YM7 354 aa14.02□□□□□ -0.17
SHROOM3-202ENST00000466541 TMTC2Q8N394 836 aa14.02□□□□□ -0.17
SHROOM3-202ENST00000466541 CTCFLQ8NI51 663 aaPredicted RBP14.02□□□□□ -0.17
SHROOM3-202ENST00000466541 PXYLP1Q8TE99 480 aa14.02□□□□□ -0.17
SHROOM3-202ENST00000466541 KCNB2Q92953 911 aa14.02□□□□□ -0.17
SHROOM3-202ENST00000466541 RNF208Q9H0X6 261 aa14.02□□□□□ -0.17
SHROOM3-202ENST00000466541 UNC93B1Q9H1C4 597 aa14.02□□□□□ -0.17
SHROOM3-202ENST00000466541 FLRT1Q9NZU1 646 aa14.02□□□□□ -0.17
SHROOM3-202ENST00000466541 PALM3A6NDB9 673 aaPredicted RBP14.01□□□□□ -0.17
SHROOM3-202ENST00000466541 HMGCRP04035 888 aa14.01□□□□□ -0.17
SHROOM3-202ENST00000466541 CCL5P13501 91 aa14.01□□□□□ -0.17
SHROOM3-202ENST00000466541 PSMA5P28066 241 aa14.01□□□□□ -0.17
SHROOM3-202ENST00000466541 TROAPQ12815 778 aa14.01□□□□□ -0.17
SHROOM3-202ENST00000466541 NSMFQ6X4W1 530 aa14.01□□□□□ -0.17
SHROOM3-202ENST00000466541 MICU3Q86XE3 530 aa14.01□□□□□ -0.17
SHROOM3-202ENST00000466541 CMTR1Q8N1G2 835 aaKnown RBP14.01□□□□□ -0.17
SHROOM3-202ENST00000466541 CCDC82Q8N4S0 544 aa14.01□□□□□ -0.17
SHROOM3-202ENST00000466541 CHST13Q8NET6 341 aa14.01□□□□□ -0.17
SHROOM3-202ENST00000466541 MTA3Q9BTC8 594 aa14.01□□□□□ -0.17
SHROOM3-202ENST00000466541 ACAD9Q9H845 621 aa14.01□□□□□ -0.17
SHROOM3-202ENST00000466541 JMJD4Q9H9V9 463 aa14.01□□□□□ -0.17
SHROOM3-202ENST00000466541 SLC5A4Q9NY91 659 aa14.01□□□□□ -0.17
SHROOM3-202ENST00000466541 FBXO40Q9UH90 709 aa14.01□□□□□ -0.17
SHROOM3-202ENST00000466541 KLF18A0A0U1RQI7 1052 aa14□□□□□ -0.17
SHROOM3-202ENST00000466541 POTEFA5A3E0 1075 aa14□□□□□ -0.17
SHROOM3-202ENST00000466541 DDAH1O94760 285 aa14□□□□□ -0.17
SHROOM3-202ENST00000466541 XRCC5P13010 732 aaKnown RBP14□□□□□ -0.17
SHROOM3-202ENST00000466541 PRKAR2AP13861 404 aaKnown RBP14□□□□□ -0.17
SHROOM3-202ENST00000466541 RPS6KB1P23443 525 aa14□□□□□ -0.17
SHROOM3-202ENST00000466541 CNGA1P29973 690 aa14□□□□□ -0.17
SHROOM3-202ENST00000466541 CYP2C19P33261 490 aa14□□□□□ -0.17
SHROOM3-202ENST00000466541 LIFRP42702 1097 aa14□□□□□ -0.17
SHROOM3-202ENST00000466541 APOBRQ0VD83 1088 aa14□□□□□ -0.17
SHROOM3-202ENST00000466541 QRICH1Q2TAL8 776 aa14□□□□□ -0.17
SHROOM3-202ENST00000466541 MFSD14CQ5VZR4 134 aa14□□□□□ -0.17
SHROOM3-202ENST00000466541 TRMT44Q8IYL2 757 aaKnown RBP14□□□□□ -0.17
SHROOM3-202ENST00000466541 ABRAQ8N0Z2 381 aa14□□□□□ -0.17
SHROOM3-202ENST00000466541 LARP6Q9BRS8 491 aaKnown RBP14□□□□□ -0.17
SHROOM3-202ENST00000466541 UPF3BQ9BZI7 483 aaKnown RBP14□□□□□ -0.17
SHROOM3-202ENST00000466541 KIAA0100Q14667 2235 aaKnown RBP14□□□□□ -0.17
SHROOM3-202ENST00000466541 WDR19Q8NEZ3 1342 aa13.99□□□□□ -0.17
SHROOM3-202ENST00000466541 PTPDC1A2A3K4 754 aa13.99□□□□□ -0.17
SHROOM3-202ENST00000466541 KIF5BP33176 963 aa13.99□□□□□ -0.17
SHROOM3-202ENST00000466541 CACNB2Q08289 660 aaPredicted RBP13.99□□□□□ -0.17
SHROOM3-202ENST00000466541 TKFCQ3LXA3 575 aa13.99□□□□□ -0.17
SHROOM3-202ENST00000466541 BRF1Q92994 677 aa13.99□□□□□ -0.17
SHROOM3-202ENST00000466541 PIGSQ96S52 555 aa13.99□□□□□ -0.17
SHROOM3-202ENST00000466541 BRPF3Q9ULD4 1205 aa13.99□□□□□ -0.17
SHROOM3-202ENST00000466541 CYP46A1Q9Y6A2 500 aa13.99□□□□□ -0.17
SHROOM3-202ENST00000466541 POTEB2H3BUK9 544 aa13.98□□□□□ -0.17
SHROOM3-202ENST00000466541 NFIBO00712 420 aa13.98□□□□□ -0.17
SHROOM3-202ENST00000466541 ZBTB43O43298 467 aa13.98□□□□□ -0.17
SHROOM3-202ENST00000466541 EPB41L2O43491 1005 aaKnown RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms