RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 STRNO43815 780 aa26.63■■□□□ 1.85
CCDC28B-203ENST00000461819 FCER1AP12319 257 aa26.63■■□□□ 1.85
CCDC28B-203ENST00000461819 GRK4P32298 578 aa26.63■■□□□ 1.85
CCDC28B-203ENST00000461819 MAP2K5Q13163 448 aa26.63■■□□□ 1.85
CCDC28B-203ENST00000461819 NBPF11Q86T75 865 aa26.63■■□□□ 1.85
CCDC28B-203ENST00000461819 STAG2Q8N3U4 1231 aa26.63■■□□□ 1.85
CCDC28B-203ENST00000461819 CTCFLQ8NI51 663 aaPredicted RBP26.63■■□□□ 1.85
CCDC28B-203ENST00000461819 SH3TC2Q8TF17 1288 aa26.63■■□□□ 1.85
CCDC28B-203ENST00000461819 AGBL1Q96MI9 1066 aa26.63■■□□□ 1.85
CCDC28B-203ENST00000461819 MMP19Q99542 508 aa26.63■■□□□ 1.85
CCDC28B-203ENST00000461819 CCPG1Q9ULG6 757 aa26.63■■□□□ 1.85
CCDC28B-203ENST00000461819 RIPK3Q9Y572 518 aa26.63■■□□□ 1.85
CCDC28B-203ENST00000461819 ZNF536O15090 1300 aa26.63■■□□□ 1.85
CCDC28B-203ENST00000461819 SMCHD1A6NHR9 2005 aa26.62■■□□□ 1.85
CCDC28B-203ENST00000461819 SEC24BO95487 1268 aa26.62■■□□□ 1.85
CCDC28B-203ENST00000461819 CALM1P0DP23 149 aa26.62■■□□□ 1.85
CCDC28B-203ENST00000461819 CALM2P0DP24 149 aa26.62■■□□□ 1.85
CCDC28B-203ENST00000461819 CALM3P0DP25 149 aa26.62■■□□□ 1.85
CCDC28B-203ENST00000461819 RPS6KB1P23443 525 aa26.62■■□□□ 1.85
CCDC28B-203ENST00000461819 ADORA2AP29274 412 aa26.62■■□□□ 1.85
CCDC28B-203ENST00000461819 KCTD2Q14681 263 aa26.62■■□□□ 1.85
CCDC28B-203ENST00000461819 SYNE3Q6ZMZ3 975 aa26.62■■□□□ 1.85
CCDC28B-203ENST00000461819 ADGRF4Q8IZF3 695 aa26.62■■□□□ 1.85
CCDC28B-203ENST00000461819 APBA2Q99767 749 aa26.62■■□□□ 1.85
CCDC28B-203ENST00000461819 BIN2Q9UBW5 565 aaPredicted RBP26.62■■□□□ 1.85
CCDC28B-203ENST00000461819 CENPFP49454 3210 aa26.61■■□□□ 1.85
CCDC28B-203ENST00000461819 PALM3A6NDB9 673 aaPredicted RBP26.61■■□□□ 1.85
CCDC28B-203ENST00000461819 ICAM1P05362 532 aa26.61■■□□□ 1.85
CCDC28B-203ENST00000461819 ALAS1P13196 640 aa26.61■■□□□ 1.85
CCDC28B-203ENST00000461819 ELNP15502 786 aa26.61■■□□□ 1.85
CCDC28B-203ENST00000461819 KIF5BP33176 963 aa26.61■■□□□ 1.85
CCDC28B-203ENST00000461819 SGMS1Q86VZ5 419 aa26.61■■□□□ 1.85
CCDC28B-203ENST00000461819 ABRAQ8N0Z2 381 aa26.61■■□□□ 1.85
CCDC28B-203ENST00000461819 FBXO40Q9UH90 709 aa26.61■■□□□ 1.85
CCDC28B-203ENST00000461819 CDC37Q16543 378 aaPredicted RBP26.6■■□□□ 1.85
CCDC28B-203ENST00000461819 TKFCQ3LXA3 575 aa26.6■■□□□ 1.85
CCDC28B-203ENST00000461819 Q6ZUG5 572 aa26.6■■□□□ 1.85
CCDC28B-203ENST00000461819 DPP9Q86TI2 863 aa26.6■■□□□ 1.85
CCDC28B-203ENST00000461819 MICU3Q86XE3 530 aa26.6■■□□□ 1.85
CCDC28B-203ENST00000461819 CHST13Q8NET6 341 aa26.6■■□□□ 1.85
CCDC28B-203ENST00000461819 PXYLP1Q8TE99 480 aa26.6■■□□□ 1.85
CCDC28B-203ENST00000461819 USP6NLQ92738 828 aa26.6■■□□□ 1.85
CCDC28B-203ENST00000461819 MAP3K14Q99558 947 aa26.6■■□□□ 1.85
CCDC28B-203ENST00000461819 VAT1LQ9HCJ6 419 aa26.6■■□□□ 1.85
CCDC28B-203ENST00000461819 RNF146Q9NTX7 359 aa26.6■■□□□ 1.85
CCDC28B-203ENST00000461819 CYP46A1Q9Y6A2 500 aa26.6■■□□□ 1.85
CCDC28B-203ENST00000461819 XRCC5P13010 732 aaKnown RBP26.59■■□□□ 1.85
CCDC28B-203ENST00000461819 RXRAP19793 462 aa26.59■■□□□ 1.85
CCDC28B-203ENST00000461819 RUFY3Q7L099 469 aa26.59■■□□□ 1.85
CCDC28B-203ENST00000461819 RAB11FIP4Q86YS3 637 aa26.59■■□□□ 1.85
CCDC28B-203ENST00000461819 ARMC5Q96C12 935 aa26.59■■□□□ 1.85
CCDC28B-203ENST00000461819 TM6SF1Q9BZW5 370 aa26.59■■□□□ 1.85
CCDC28B-203ENST00000461819 ACAD9Q9H845 621 aa26.59■■□□□ 1.85
CCDC28B-203ENST00000461819 PNMA2Q9UL42 364 aa26.59■■□□□ 1.85
CCDC28B-203ENST00000461819 NAP1L2Q9ULW6 460 aaPredicted RBP26.59■■□□□ 1.85
CCDC28B-203ENST00000461819 RBBP6Q7Z6E9 1792 aaKnown RBP26.58■■□□□ 1.85
CCDC28B-203ENST00000461819 BAZ2BQ9UIF8 2168 aaKnown RBP26.58■■□□□ 1.85
CCDC28B-203ENST00000461819 CCDC85CA6NKD9 419 aa26.58■■□□□ 1.85
CCDC28B-203ENST00000461819 ANAPC15P60006 121 aa26.58■■□□□ 1.85
CCDC28B-203ENST00000461819 APOA5Q6Q788 366 aa26.58■■□□□ 1.85
CCDC28B-203ENST00000461819 CCDC144CPQ8IYA2 1237 aa26.58■■□□□ 1.85
CCDC28B-203ENST00000461819 TRERF1Q96PN7 1200 aa26.58■■□□□ 1.85
CCDC28B-203ENST00000461819 ZSWIM6Q9HCJ5 1215 aa26.58■■□□□ 1.85
CCDC28B-203ENST00000461819 SLC5A4Q9NY91 659 aa26.58■■□□□ 1.85
CCDC28B-203ENST00000461819 KLF18A0A0U1RQI7 1052 aa26.57■■□□□ 1.84
CCDC28B-203ENST00000461819 TAL1P17542 331 aaPredicted RBP26.57■■□□□ 1.84
CCDC28B-203ENST00000461819 TRMT44Q8IYL2 757 aaKnown RBP26.57■■□□□ 1.84
CCDC28B-203ENST00000461819 ANKRD35Q8N283 1001 aa26.57■■□□□ 1.84
CCDC28B-203ENST00000461819 BRF1Q92994 677 aa26.57■■□□□ 1.84
CCDC28B-203ENST00000461819 UPF3BQ9BZI7 483 aaKnown RBP26.57■■□□□ 1.84
CCDC28B-203ENST00000461819 JMJD4Q9H9V9 463 aa26.57■■□□□ 1.84
CCDC28B-203ENST00000461819 ZBTB43O43298 467 aa26.56■■□□□ 1.84
CCDC28B-203ENST00000461819 HMGCRP04035 888 aa26.56■■□□□ 1.84
CCDC28B-203ENST00000461819 UBXN2AP68543 259 aa26.56■■□□□ 1.84
CCDC28B-203ENST00000461819 USH1GQ495M9 461 aa26.56■■□□□ 1.84
CCDC28B-203ENST00000461819 TRIB2Q92519 343 aa26.56■■□□□ 1.84
CCDC28B-203ENST00000461819 DDX11Q96FC9 970 aa26.56■■□□□ 1.84
CCDC28B-203ENST00000461819 ZNF333Q96JL9 665 aa26.56■■□□□ 1.84
CCDC28B-203ENST00000461819 BRPF3Q9ULD4 1205 aa26.56■■□□□ 1.84
CCDC28B-203ENST00000461819 MYCP01106 439 aaPredicted RBP26.55■■□□□ 1.84
CCDC28B-203ENST00000461819 INHAP05111 366 aa26.55■■□□□ 1.84
CCDC28B-203ENST00000461819 PGK2P07205 417 aa26.55■■□□□ 1.84
CCDC28B-203ENST00000461819 HOXC6P09630 235 aa26.55■■□□□ 1.84
CCDC28B-203ENST00000461819 GNAQP50148 359 aa26.55■■□□□ 1.84
CCDC28B-203ENST00000461819 APOBRQ0VD83 1088 aa26.55■■□□□ 1.84
CCDC28B-203ENST00000461819 QRICH1Q2TAL8 776 aa26.55■■□□□ 1.84
CCDC28B-203ENST00000461819 HOMER1Q86YM7 354 aa26.55■■□□□ 1.84
CCDC28B-203ENST00000461819 COBLO75128 1261 aa26.54■■□□□ 1.84
CCDC28B-203ENST00000461819 CCL14Q16627 93 aa26.54■■□□□ 1.84
CCDC28B-203ENST00000461819 MUM1L1Q5H9M0 696 aa26.54■■□□□ 1.84
CCDC28B-203ENST00000461819 DHX30Q7L2E3 1194 aaKnown RBP eCLIP26.54■■□□□ 1.84
CCDC28B-203ENST00000461819 FANCBQ8NB91 859 aa26.54■■□□□ 1.84
CCDC28B-203ENST00000461819 NPLOC4Q8TAT6 608 aa26.54■■□□□ 1.84
CCDC28B-203ENST00000461819 LZTS2Q9BRK4 669 aa26.54■■□□□ 1.84
CCDC28B-203ENST00000461819 GOLGA8BA8MQT2 603 aa26.53■■□□□ 1.84
CCDC28B-203ENST00000461819 FBXO11Q86XK2 927 aa26.53■■□□□ 1.84
CCDC28B-203ENST00000461819 RIOX1Q9H6W3 641 aa26.53■■□□□ 1.84
CCDC28B-203ENST00000461819 GOLGA8AA7E2F4 631 aa26.52■■□□□ 1.84
CCDC28B-203ENST00000461819 ZBTB5O15062 677 aa26.52■■□□□ 1.84
CCDC28B-203ENST00000461819 PFASO15067 1338 aa26.52■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms