RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 PDE4DQ08499 809 aa17.27■□□□□ 0.36
LMNB1-203ENST00000460265 ZNF579Q8NAF0 562 aaKnown RBP17.27■□□□□ 0.36
LMNB1-203ENST00000460265 EXOC1Q9NV70 894 aa17.27■□□□□ 0.36
LMNB1-203ENST00000460265 PPP1R1BQ9UD71 204 aaPredicted RBP17.27■□□□□ 0.36
LMNB1-203ENST00000460265 TRIM49BA6NDI0 452 aa17.27■□□□□ 0.35
LMNB1-203ENST00000460265 TM4SF1P30408 202 aa17.27■□□□□ 0.35
LMNB1-203ENST00000460265 MAGEA9P43362 315 aa17.27■□□□□ 0.35
LMNB1-203ENST00000460265 MORC3Q14149 939 aa17.27■□□□□ 0.35
LMNB1-203ENST00000460265 RCSD1Q6JBY9 416 aa17.27■□□□□ 0.35
LMNB1-203ENST00000460265 KCTD1Q719H9 257 aa17.27■□□□□ 0.35
LMNB1-203ENST00000460265 PPP2R2CQ9Y2T4 447 aa17.27■□□□□ 0.35
LMNB1-203ENST00000460265 ARHGAP6O43182 974 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 BBOX1O75936 387 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 RPN1P04843 607 aaKnown RBP17.26■□□□□ 0.35
LMNB1-203ENST00000460265 CASP14P31944 242 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 MTF1Q14872 753 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 REXO1Q8N1G1 1221 aaKnown RBP17.26■□□□□ 0.35
LMNB1-203ENST00000460265 TBC1D16Q8TBP0 767 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 GSDMAQ96QA5 445 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 SRRTQ9BXP5 876 aaKnown RBP17.26■□□□□ 0.35
LMNB1-203ENST00000460265 TMEM60Q9H2L4 133 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 TMEM260Q9NX78 707 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.26■□□□□ 0.35
LMNB1-203ENST00000460265 LAMA4Q16363 1823 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 FAM205AQ6ZU69 1335 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 MYH14Q7Z406 1995 aaKnown RBP17.26■□□□□ 0.35
LMNB1-203ENST00000460265 STRCQ7RTU9 1775 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 PSMA7O14818 248 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 GYS1P13807 737 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 CD44P16070 742 aaKnown RBP17.26■□□□□ 0.35
LMNB1-203ENST00000460265 RASA1P20936 1047 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 ETF1P62495 437 aaKnown RBP17.26■□□□□ 0.35
LMNB1-203ENST00000460265 RBL2Q08999 1139 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 CABP7Q86V35 215 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 TBCKQ8TEA7 893 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 EXOC4Q96A65 974 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 RMND1Q9NWS8 449 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 SOWAHDA6NJG2 315 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 PPEF1O14829 653 aaPredicted RBP17.26■□□□□ 0.35
LMNB1-203ENST00000460265 HSPA1LP34931 641 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 RCAN1P53805 252 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 TYW1BQ6NUM6 668 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 CCDC91Q7Z6B0 441 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 CTAGE1Q96RT6 745 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 VPS18Q9P253 973 aa17.26■□□□□ 0.35
LMNB1-203ENST00000460265 TRIM21P19474 475 aaKnown RBP17.25■□□□□ 0.35
LMNB1-203ENST00000460265 TRIML1Q8N9V2 468 aa17.25■□□□□ 0.35
LMNB1-203ENST00000460265 SHISA4Q96DD7 197 aa17.25■□□□□ 0.35
LMNB1-203ENST00000460265 PARP3Q9Y6F1 533 aa17.25■□□□□ 0.35
LMNB1-203ENST00000460265 AKAP11Q9UKA4 1901 aa17.25■□□□□ 0.35
LMNB1-203ENST00000460265 NAP1L1P55209 391 aaKnown RBP17.25■□□□□ 0.35
LMNB1-203ENST00000460265 ATP2C1P98194 919 aaPredicted RBP17.25■□□□□ 0.35
LMNB1-203ENST00000460265 CT47A1Q5JQC4 288 aaPredicted RBP17.25■□□□□ 0.35
LMNB1-203ENST00000460265 IRX2Q9BZI1 471 aaPredicted RBP17.25■□□□□ 0.35
LMNB1-203ENST00000460265 PUF60Q9UHX1 559 aaKnown RBP17.25■□□□□ 0.35
LMNB1-203ENST00000460265 KIF5CO60282 957 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 SASH3O75995 380 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 CCDC175P0C221 793 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 KRT9P35527 623 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 TMEM266Q2M3C6 531 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 SBK1Q52WX2 424 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 KRT27Q7Z3Y8 459 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 TBC1D22AQ8WUA7 517 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 CEP83Q9Y592 693 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 LRP6O75581 1613 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 COL1A1P02452 1464 aaPredicted RBP17.24■□□□□ 0.35
LMNB1-203ENST00000460265 XIRP1Q702N8 1843 aaKnown RBP17.24■□□□□ 0.35
LMNB1-203ENST00000460265 NUP188Q5SRE5 1749 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 EIF3CLB5ME19 914 aaKnown RBP17.24■□□□□ 0.35
LMNB1-203ENST00000460265 ATP8B1O43520 1251 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 CCDC172P0C7W6 258 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 FUT2Q10981 343 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 ZNF569Q5MCW4 686 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 TOGARAM2Q6ZUX3 1019 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 EIF3CQ99613 913 aaKnown RBP17.24■□□□□ 0.35
LMNB1-203ENST00000460265 TBC1D7Q9P0N9 293 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 BAZ2AQ9UIF9 1905 aaKnown RBP17.24■□□□□ 0.35
LMNB1-203ENST00000460265 PPM1EQ8WY54 764 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 LRWD1Q9UFC0 647 aa17.24■□□□□ 0.35
LMNB1-203ENST00000460265 GTPBP6O43824 516 aaPredicted RBP17.23■□□□□ 0.35
LMNB1-203ENST00000460265 TBC1D8O95759 1140 aa17.23■□□□□ 0.35
LMNB1-203ENST00000460265 MMP10P09238 476 aa17.23■□□□□ 0.35
LMNB1-203ENST00000460265 ERCC5P28715 1186 aaPredicted RBP17.23■□□□□ 0.35
LMNB1-203ENST00000460265 SNAP25P60880 206 aa17.23■□□□□ 0.35
LMNB1-203ENST00000460265 UBE2SQ16763 222 aa17.23■□□□□ 0.35
LMNB1-203ENST00000460265 REXO1L1PQ8IX06 675 aa17.23■□□□□ 0.35
LMNB1-203ENST00000460265 CSGALNACT2Q8N6G5 542 aa17.23■□□□□ 0.35
LMNB1-203ENST00000460265 HPS3Q969F9 1004 aa17.23■□□□□ 0.35
LMNB1-203ENST00000460265 GLI3P10071 1580 aa17.23■□□□□ 0.35
LMNB1-203ENST00000460265 MCM6Q14566 821 aa17.23■□□□□ 0.35
LMNB1-203ENST00000460265 GJA10Q969M2 543 aa17.23■□□□□ 0.35
LMNB1-203ENST00000460265 SLF1Q9BQI6 1058 aa17.23■□□□□ 0.35
LMNB1-203ENST00000460265 SLC39A2Q9NP94 309 aa17.23■□□□□ 0.35
LMNB1-203ENST00000460265 ZNHIT6Q9NWK9 470 aaKnown RBP17.23■□□□□ 0.35
LMNB1-203ENST00000460265 COL14A1Q05707 1796 aaKnown RBP17.23■□□□□ 0.35
LMNB1-203ENST00000460265 KCNJ18B7U540 433 aa17.23■□□□□ 0.35
LMNB1-203ENST00000460265 AKR1B1P15121 316 aa17.23■□□□□ 0.35
LMNB1-203ENST00000460265 KCNJ12Q14500 433 aa17.23■□□□□ 0.35
LMNB1-203ENST00000460265 NEK8Q86SG6 692 aa17.23■□□□□ 0.35
LMNB1-203ENST00000460265 PYM1Q9BRP8 204 aaKnown RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms