RNA–Protein interactions for RNA: ENST00000440421.2

LTBR-202, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 729 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-202ENST00000440421 TAF6LQ9Y6J9 622 aa16.13■□□□□ 0.17
LTBR-202ENST00000440421 PLXNA1Q9UIW2 1896 aa16.13■□□□□ 0.17
LTBR-202ENST00000440421 TNKSO95271 1327 aa16.13■□□□□ 0.17
LTBR-202ENST00000440421 GOLGA8HP0CJ92 632 aa16.12■□□□□ 0.17
LTBR-202ENST00000440421 TAL1P17542 331 aaPredicted RBP16.12■□□□□ 0.17
LTBR-202ENST00000440421 ZNF543Q08ER8 600 aa16.12■□□□□ 0.17
LTBR-202ENST00000440421 TRDNQ13061 729 aa16.12■□□□□ 0.17
LTBR-202ENST00000440421 ANO1Q5XXA6 986 aa16.12■□□□□ 0.17
LTBR-202ENST00000440421 BTNL9Q6UXG8 535 aa16.12■□□□□ 0.17
LTBR-202ENST00000440421 NECAB2Q7Z6G3 386 aa16.12■□□□□ 0.17
LTBR-202ENST00000440421 ANKLE1Q8NAG6 615 aa16.12■□□□□ 0.17
LTBR-202ENST00000440421 MAP4K1Q92918 833 aa16.12■□□□□ 0.17
LTBR-202ENST00000440421 ESYT1Q9BSJ8 1104 aa16.12■□□□□ 0.17
LTBR-202ENST00000440421 HTATIP2Q9BUP3 242 aa16.12■□□□□ 0.17
LTBR-202ENST00000440421 RNF146Q9NTX7 359 aa16.12■□□□□ 0.17
LTBR-202ENST00000440421 DDX20Q9UHI6 824 aaKnown RBP16.12■□□□□ 0.17
LTBR-202ENST00000440421 CCPG1Q9ULG6 757 aa16.12■□□□□ 0.17
LTBR-202ENST00000440421 DIS3Q9Y2L1 958 aaKnown RBP16.12■□□□□ 0.17
LTBR-202ENST00000440421 RBM8AQ9Y5S9 174 aaKnown RBP16.12■□□□□ 0.17
LTBR-202ENST00000440421 DNAJC25-GNG10A0A024R161 153 aa16.11■□□□□ 0.17
LTBR-202ENST00000440421 SNHG28P0DPA3 235 aa16.11■□□□□ 0.17
LTBR-202ENST00000440421 MNX1P50219 401 aaPredicted RBP16.11■□□□□ 0.17
LTBR-202ENST00000440421 ANKS1AQ92625 1134 aa16.11■□□□□ 0.17
LTBR-202ENST00000440421 TRERF1Q96PN7 1200 aa16.11■□□□□ 0.17
LTBR-202ENST00000440421 TINF2Q9BSI4 451 aa16.11■□□□□ 0.17
LTBR-202ENST00000440421 RANBP17Q9H2T7 1088 aaKnown RBP16.11■□□□□ 0.17
LTBR-202ENST00000440421 ACAD9Q9H845 621 aa16.11■□□□□ 0.17
LTBR-202ENST00000440421 MKI67P46013 3256 aaKnown RBP16.11■□□□□ 0.17
LTBR-202ENST00000440421 FRMPD3Q5JV73 1810 aa16.1■□□□□ 0.17
LTBR-202ENST00000440421 E7EWF7 191 aa16.1■□□□□ 0.17
LTBR-202ENST00000440421 MSCO60682 206 aa16.1■□□□□ 0.17
LTBR-202ENST00000440421 MUM1L1Q5H9M0 696 aa16.1■□□□□ 0.17
LTBR-202ENST00000440421 IFIT1BQ5T764 474 aaKnown RBP16.1■□□□□ 0.17
LTBR-202ENST00000440421 STOX1Q6ZVD7 989 aa16.1■□□□□ 0.17
LTBR-202ENST00000440421 RALYLQ86SE5 291 aaKnown RBP16.1■□□□□ 0.17
LTBR-202ENST00000440421 UBA5Q9GZZ9 404 aa16.1■□□□□ 0.17
LTBR-202ENST00000440421 LSG1Q9H089 658 aaKnown RBP16.1■□□□□ 0.17
LTBR-202ENST00000440421 CPVLQ9H3G5 476 aa16.1■□□□□ 0.17
LTBR-202ENST00000440421 SEPT4O43236 478 aa16.09■□□□□ 0.17
LTBR-202ENST00000440421 ICAM1P05362 532 aa16.09■□□□□ 0.17
LTBR-202ENST00000440421 SEC23AQ15436 765 aa16.09■□□□□ 0.17
LTBR-202ENST00000440421 TKFCQ3LXA3 575 aa16.09■□□□□ 0.17
LTBR-202ENST00000440421 GPATCH4Q5T3I0 446 aaKnown RBP16.09■□□□□ 0.17
LTBR-202ENST00000440421 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.09■□□□□ 0.17
LTBR-202ENST00000440421 CHST3Q7LGC8 479 aa16.09■□□□□ 0.17
LTBR-202ENST00000440421 NCOA7Q8NI08 942 aa16.09■□□□□ 0.17
LTBR-202ENST00000440421 C11orf49Q9H6J7 331 aa16.09■□□□□ 0.17
LTBR-202ENST00000440421 ANO2Q9NQ90 1003 aa16.09■□□□□ 0.17
LTBR-202ENST00000440421 A1CFQ9NQ94 594 aaKnown RBP16.09■□□□□ 0.17
LTBR-202ENST00000440421 POTEB2H3BUK9 544 aa16.08■□□□□ 0.16
LTBR-202ENST00000440421 MYCNP04198 464 aaPredicted RBP16.08■□□□□ 0.16
LTBR-202ENST00000440421 CNTN2Q02246 1040 aa16.08■□□□□ 0.16
LTBR-202ENST00000440421 FGD4Q96M96 766 aa16.08■□□□□ 0.16
LTBR-202ENST00000440421 CNPY2Q9Y2B0 182 aa16.08■□□□□ 0.16
LTBR-202ENST00000440421 H0YGN5 161 aa16.07■□□□□ 0.16
LTBR-202ENST00000440421 IFIT3O14879 490 aaKnown RBP16.07■□□□□ 0.16
LTBR-202ENST00000440421 EVI5O60447 810 aa16.07■□□□□ 0.16
LTBR-202ENST00000440421 CDC45O75419 566 aa16.07■□□□□ 0.16
LTBR-202ENST00000440421 SNAI1O95863 264 aaPredicted RBP16.07■□□□□ 0.16
LTBR-202ENST00000440421 PARP1P09874 1014 aaKnown RBP16.07■□□□□ 0.16
LTBR-202ENST00000440421 ASPRV1Q53RT3 343 aa16.07■□□□□ 0.16
LTBR-202ENST00000440421 NSMFQ6X4W1 530 aa16.07■□□□□ 0.16
LTBR-202ENST00000440421 NRBP1Q9UHY1 535 aa16.07■□□□□ 0.16
LTBR-202ENST00000440421 ZHX1Q9UKY1 873 aaPredicted RBP16.07■□□□□ 0.16
LTBR-202ENST00000440421 SMCHD1A6NHR9 2005 aa16.06■□□□□ 0.16
LTBR-202ENST00000440421 PFASO15067 1338 aa16.06■□□□□ 0.16
LTBR-202ENST00000440421 SYNGAP1Q96PV0 1343 aa16.06■□□□□ 0.16
LTBR-202ENST00000440421 ERICH2A1L162 156 aa16.06■□□□□ 0.16
LTBR-202ENST00000440421 SLC27A2O14975 620 aa16.06■□□□□ 0.16
LTBR-202ENST00000440421 DHX16O60231 1041 aaKnown RBP16.06■□□□□ 0.16
LTBR-202ENST00000440421 ZNF865P0CJ78 1059 aaPredicted RBP16.06■□□□□ 0.16
LTBR-202ENST00000440421 GJC2Q5T442 439 aaPredicted RBP16.06■□□□□ 0.16
LTBR-202ENST00000440421 CASC1Q6TDU7 716 aa16.06■□□□□ 0.16
LTBR-202ENST00000440421 MAMDC4Q6UXC1 1216 aa16.06■□□□□ 0.16
LTBR-202ENST00000440421 ZNF467Q7Z7K2 595 aaPredicted RBP16.06■□□□□ 0.16
LTBR-202ENST00000440421 MSL3Q8N5Y2 521 aaKnown RBP16.06■□□□□ 0.16
LTBR-202ENST00000440421 FAM133AQ8N9E0 248 aa16.06■□□□□ 0.16
LTBR-202ENST00000440421 PURBQ96QR8 312 aaKnown RBP16.06■□□□□ 0.16
LTBR-202ENST00000440421 SENP2Q9HC62 589 aa16.06■□□□□ 0.16
LTBR-202ENST00000440421 VAT1LQ9HCJ6 419 aa16.06■□□□□ 0.16
LTBR-202ENST00000440421 SOWAHBA6NEL2 793 aa16.05■□□□□ 0.16
LTBR-202ENST00000440421 NFIBO00712 420 aa16.05■□□□□ 0.16
LTBR-202ENST00000440421 COL6A1P12109 1028 aa16.05■□□□□ 0.16
LTBR-202ENST00000440421 ANTXR2P58335 489 aa16.05■□□□□ 0.16
LTBR-202ENST00000440421 SART3Q15020 963 aaKnown RBP16.05■□□□□ 0.16
LTBR-202ENST00000440421 USH1GQ495M9 461 aa16.05■□□□□ 0.16
LTBR-202ENST00000440421 TMEM67Q5HYA8 995 aa16.05■□□□□ 0.16
LTBR-202ENST00000440421 CREB3L3Q68CJ9 461 aa16.05■□□□□ 0.16
LTBR-202ENST00000440421 ARMCX2Q7L311 632 aa16.05■□□□□ 0.16
LTBR-202ENST00000440421 CCDC144CPQ8IYA2 1237 aa16.05■□□□□ 0.16
LTBR-202ENST00000440421 MB21D2Q8IYB1 491 aaPredicted RBP16.05■□□□□ 0.16
LTBR-202ENST00000440421 ADGRF4Q8IZF3 695 aa16.05■□□□□ 0.16
LTBR-202ENST00000440421 STAG2Q8N3U4 1231 aa16.05■□□□□ 0.16
LTBR-202ENST00000440421 LENG1Q96BZ8 264 aaPredicted RBP16.05■□□□□ 0.16
LTBR-202ENST00000440421 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.05■□□□□ 0.16
LTBR-202ENST00000440421 CYP39A1Q9NYL5 469 aa16.05■□□□□ 0.16
LTBR-202ENST00000440421 NR2E3Q9Y5X4 410 aa16.05■□□□□ 0.16
LTBR-202ENST00000440421 DDX49Q9Y6V7 483 aaKnown RBP16.05■□□□□ 0.16
LTBR-202ENST00000440421 ALPK3Q96L96 1907 aa16.04■□□□□ 0.16
LTBR-202ENST00000440421 PTPDC1A2A3K4 754 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms