RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 BEGAINQ9BUH8 593 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 CENPHQ9H3R5 247 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 ATAD3AQ9NVI7 634 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 CABP1Q9NZU7 370 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 TRIM35Q9UPQ4 493 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 ABCC9O60706 1549 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 NPATQ14207 1427 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 GTPBP10A4D1E9 387 aaKnown RBP7.19□□□□□ -1.26
MCF2-205ENST00000437564 KPNA6O60684 536 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 RPN1P04843 607 aaKnown RBP7.19□□□□□ -1.26
MCF2-205ENST00000437564 ALDH2P05091 517 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 TXLNAP40222 546 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 ACADVLP49748 655 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 TBX4P57082 545 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 GJA9P57773 515 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 AMPD3Q01432 767 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 KLC1Q07866 573 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 TNIP1Q15025 636 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 PTPROQ16827 1216 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 TWF2Q6IBS0 349 aaKnown RBP7.19□□□□□ -1.26
MCF2-205ENST00000437564 GRAMD4Q6IC98 578 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 SLC2A7Q6PXP3 512 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 C3orf62Q6ZUJ4 267 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 ARHGAP27Q6ZUM4 889 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 EXOC3L1Q86VI1 746 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 FAM228AQ86W67 206 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 PLA2G4DQ86XP0 818 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 TRIM50Q86XT4 487 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 LRRC8AQ8IWT6 810 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 CCDC13Q8IYE1 715 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 CARNMT1Q8N4J0 409 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 TRIML2Q8N7C3 387 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 CCDC89Q8N998 374 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 TMEM87AQ8NBN3 555 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 BRSK1Q8TDC3 778 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 HNRNPABQ99729 332 aaKnown RBP7.19□□□□□ -1.26
MCF2-205ENST00000437564 POLR3EQ9NVU0 708 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 NOP53Q9NZM5 478 aaKnown RBP7.19□□□□□ -1.26
MCF2-205ENST00000437564 STAP2Q9UGK3 403 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 ATPIF1Q9UII2 106 aa7.19□□□□□ -1.26
MCF2-205ENST00000437564 PRDM15P57071 1507 aaPredicted RBP7.18□□□□□ -1.26
MCF2-205ENST00000437564 ZNF608Q9ULD9 1512 aaPredicted RBP7.18□□□□□ -1.26
MCF2-205ENST00000437564 RTL1A6NKG5 1358 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 TMEM94Q12767 1356 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 SETD1BQ9UPS6 1966 aaKnown RBP7.18□□□□□ -1.26
MCF2-205ENST00000437564 BLMP54132 1417 aaPredicted RBP7.18□□□□□ -1.26
MCF2-205ENST00000437564 SPDYE5A6NIY4 337 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 SRRM3A6NNA2 597 aaPredicted RBP7.18□□□□□ -1.26
MCF2-205ENST00000437564 CDC45O75419 566 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 EIF2S1P05198 315 aaKnown RBP7.18□□□□□ -1.26
MCF2-205ENST00000437564 GSTA2P09210 222 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 IRAK1P51617 712 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 CCNG1P51959 295 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 MRPS25P82663 173 aaKnown RBP7.18□□□□□ -1.26
MCF2-205ENST00000437564 PPFIA1Q13136 1202 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 CFAP100Q494V2 611 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 RSRC2Q7L4I2 434 aaKnown RBP7.18□□□□□ -1.26
MCF2-205ENST00000437564 PAF1Q8N7H5 531 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 ZNF713Q8N859 430 aaPredicted RBP7.18□□□□□ -1.26
MCF2-205ENST00000437564 GALNT6Q8NCL4 622 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 BCAS4Q8TDM0 211 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 DQX1Q8TE96 717 aaKnown RBP7.18□□□□□ -1.26
MCF2-205ENST00000437564 SGCDQ92629 289 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 IL17RAQ96F46 866 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 FUCA2Q9BTY2 467 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 FAM192AQ9GZU8 254 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 ABCG4Q9H172 646 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.18□□□□□ -1.26
MCF2-205ENST00000437564 IL1RAPL1Q9NZN1 696 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.18□□□□□ -1.26
MCF2-205ENST00000437564 DSEQ9UL01 958 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 FADS3Q9Y5Q0 445 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 CARMIL1Q5VZK9 1371 aa7.18□□□□□ -1.26
MCF2-205ENST00000437564 UBN2Q6ZU65 1347 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 SPECC1L-ADORA2AF8WAN1 911 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 FOXN3O00409 490 aaPredicted RBP7.17□□□□□ -1.26
MCF2-205ENST00000437564 EIF3HO15372 352 aaKnown RBP eCLIP7.17□□□□□ -1.26
MCF2-205ENST00000437564 MAP3K7O43318 606 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 RNF40O75150 1001 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 SUPT3HO75486 399 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 FBXO21O94952 628 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 FOSP01100 380 aaPredicted RBP7.17□□□□□ -1.26
MCF2-205ENST00000437564 KRT14P02533 472 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 CLTAP09496 248 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 CCDC192P0DO97 292 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 PDHBP11177 359 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 PCP11498 1178 aaKnown RBP7.17□□□□□ -1.26
MCF2-205ENST00000437564 SCG2P13521 617 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 HOXC13P31276 330 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 HSPA1LP34931 641 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 HALP42357 657 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 ACADSBP45954 432 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 SERPINB8P50452 374 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 ZNF75DP51815 510 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 GSDMDP57764 484 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 POLR2FP61218 127 aaKnown RBP7.17□□□□□ -1.26
MCF2-205ENST00000437564 PLOD1Q02809 727 aaPredicted RBP7.17□□□□□ -1.26
MCF2-205ENST00000437564 LRMPQ12912 555 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 TBC1D9BQ66K14 1250 aa7.17□□□□□ -1.26
MCF2-205ENST00000437564 NCAPH2Q6IBW4 605 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms