RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 SEC23AQ15436 765 aa13.4□□□□□ -0.26
COL28A1-203ENST00000435823 TTBK2Q6IQ55 1244 aa13.4□□□□□ -0.26
COL28A1-203ENST00000435823 BTNL9Q6UXG8 535 aa13.4□□□□□ -0.26
COL28A1-203ENST00000435823 MB21D2Q8IYB1 491 aaPredicted RBP13.4□□□□□ -0.26
COL28A1-203ENST00000435823 ZNF579Q8NAF0 562 aaKnown RBP13.4□□□□□ -0.26
COL28A1-203ENST00000435823 TRIB2Q92519 343 aa13.4□□□□□ -0.26
COL28A1-203ENST00000435823 RNF208Q9H0X6 261 aa13.4□□□□□ -0.26
COL28A1-203ENST00000435823 FBXO40Q9UH90 709 aa13.4□□□□□ -0.26
COL28A1-203ENST00000435823 HTTP42858 3142 aa13.4□□□□□ -0.26
COL28A1-203ENST00000435823 PARP1P09874 1014 aaKnown RBP13.39□□□□□ -0.27
COL28A1-203ENST00000435823 GOLGA8HP0CJ92 632 aa13.39□□□□□ -0.27
COL28A1-203ENST00000435823 MCM5P33992 734 aa13.39□□□□□ -0.27
COL28A1-203ENST00000435823 KRT32Q14532 448 aa13.39□□□□□ -0.27
COL28A1-203ENST00000435823 TKFCQ3LXA3 575 aa13.39□□□□□ -0.27
COL28A1-203ENST00000435823 ASPRV1Q53RT3 343 aa13.39□□□□□ -0.27
COL28A1-203ENST00000435823 TMEM67Q5HYA8 995 aa13.39□□□□□ -0.27
COL28A1-203ENST00000435823 MFSD14CQ5VZR4 134 aa13.39□□□□□ -0.27
COL28A1-203ENST00000435823 CCDC174Q6PII3 467 aa13.39□□□□□ -0.27
COL28A1-203ENST00000435823 CHST13Q8NET6 341 aa13.39□□□□□ -0.27
COL28A1-203ENST00000435823 MTA3Q9BTC8 594 aa13.39□□□□□ -0.27
COL28A1-203ENST00000435823 RANBP17Q9H2T7 1088 aaKnown RBP13.39□□□□□ -0.27
COL28A1-203ENST00000435823 PNMA2Q9UL42 364 aa13.39□□□□□ -0.27
COL28A1-203ENST00000435823 RBBP6Q7Z6E9 1792 aaKnown RBP13.39□□□□□ -0.27
COL28A1-203ENST00000435823 POTEFA5A3E0 1075 aa13.38□□□□□ -0.27
COL28A1-203ENST00000435823 PRC1O43663 620 aa13.38□□□□□ -0.27
COL28A1-203ENST00000435823 RGS19P49795 217 aa13.38□□□□□ -0.27
COL28A1-203ENST00000435823 CCL14Q16627 93 aa13.38□□□□□ -0.27
COL28A1-203ENST00000435823 CHST3Q7LGC8 479 aa13.38□□□□□ -0.27
COL28A1-203ENST00000435823 NPLOC4Q8TAT6 608 aa13.38□□□□□ -0.27
COL28A1-203ENST00000435823 DDX11Q96FC9 970 aa13.38□□□□□ -0.27
COL28A1-203ENST00000435823 AGBL1Q96MI9 1066 aa13.38□□□□□ -0.27
COL28A1-203ENST00000435823 UNC93B1Q9H1C4 597 aa13.38□□□□□ -0.27
COL28A1-203ENST00000435823 ACAD9Q9H845 621 aa13.38□□□□□ -0.27
COL28A1-203ENST00000435823 HMX1Q9NP08 348 aaPredicted RBP13.38□□□□□ -0.27
COL28A1-203ENST00000435823 RIPK3Q9Y572 518 aa13.38□□□□□ -0.27
COL28A1-203ENST00000435823 RPTORQ8N122 1335 aa13.38□□□□□ -0.27
COL28A1-203ENST00000435823 POTEB2H3BUK9 544 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 DHX16O60231 1041 aaKnown RBP13.37□□□□□ -0.27
COL28A1-203ENST00000435823 COBLO75128 1261 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 ICAM1P05362 532 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 GJB1P08034 283 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 ALAS1P13196 640 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 ANTXR2P58335 489 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 SNAP25P60880 206 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 OLFML2BQ68BL8 750 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 CATIPQ7Z7H3 387 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 ANKRD35Q8N283 1001 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 TMEM87BQ96K49 555 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 NEK1Q96PY6 1258 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 UBA5Q9GZZ9 404 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.37□□□□□ -0.27
COL28A1-203ENST00000435823 HOMER2Q9NSB8 354 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 RNF146Q9NTX7 359 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 CCPG1Q9ULG6 757 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 ZNF536O15090 1300 aa13.37□□□□□ -0.27
COL28A1-203ENST00000435823 PGK2P07205 417 aa13.36□□□□□ -0.27
COL28A1-203ENST00000435823 MLLT1Q03111 559 aaPredicted RBP13.36□□□□□ -0.27
COL28A1-203ENST00000435823 TRIM32Q13049 653 aa13.36□□□□□ -0.27
COL28A1-203ENST00000435823 TSGA10IPQ3SY00 556 aa13.36□□□□□ -0.27
COL28A1-203ENST00000435823 NFXL1Q6ZNB6 911 aa13.36□□□□□ -0.27
COL28A1-203ENST00000435823 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.36□□□□□ -0.27
COL28A1-203ENST00000435823 TMTC2Q8N394 836 aa13.36□□□□□ -0.27
COL28A1-203ENST00000435823 IGDCC4Q8TDY8 1250 aa13.36□□□□□ -0.27
COL28A1-203ENST00000435823 TRERF1Q96PN7 1200 aa13.36□□□□□ -0.27
COL28A1-203ENST00000435823 FLRT1Q9NZU1 646 aa13.36□□□□□ -0.27
COL28A1-203ENST00000435823 DIS3Q9Y2L1 958 aaKnown RBP13.36□□□□□ -0.27
COL28A1-203ENST00000435823 ZNFX1Q9P2E3 1918 aaKnown RBP13.36□□□□□ -0.27
COL28A1-203ENST00000435823 KIAA0100Q14667 2235 aaKnown RBP13.35□□□□□ -0.27
COL28A1-203ENST00000435823 CCDC69A6NI79 296 aa13.35□□□□□ -0.27
COL28A1-203ENST00000435823 SH2B2O14492 632 aaPredicted RBP13.35□□□□□ -0.27
COL28A1-203ENST00000435823 EPB41L2O43491 1005 aaKnown RBP13.35□□□□□ -0.27
COL28A1-203ENST00000435823 HMGB1P09429 215 aaKnown RBP13.35□□□□□ -0.27
COL28A1-203ENST00000435823 CAPN2P17655 700 aa13.35□□□□□ -0.27
COL28A1-203ENST00000435823 EN2P19622 333 aaPredicted RBP13.35□□□□□ -0.27
COL28A1-203ENST00000435823 HSPA4P34932 840 aa13.35□□□□□ -0.27
COL28A1-203ENST00000435823 GJA8P48165 433 aa13.35□□□□□ -0.27
COL28A1-203ENST00000435823 CACNB2Q08289 660 aaPredicted RBP13.35□□□□□ -0.27
COL28A1-203ENST00000435823 GRM4Q14833 912 aa13.35□□□□□ -0.27
COL28A1-203ENST00000435823 MAP3K21Q5TCX8 1036 aa13.35□□□□□ -0.27
COL28A1-203ENST00000435823 NUP133Q8WUM0 1156 aa13.35□□□□□ -0.27
COL28A1-203ENST00000435823 MAML3Q96JK9 1138 aa13.35□□□□□ -0.27
COL28A1-203ENST00000435823 DEFB118Q96PH6 123 aa13.35□□□□□ -0.27
COL28A1-203ENST00000435823 LY9Q9HBG7 655 aa13.35□□□□□ -0.27
COL28A1-203ENST00000435823 PAK6Q9NQU5 681 aaPredicted RBP13.35□□□□□ -0.27
COL28A1-203ENST00000435823 WDR19Q8NEZ3 1342 aa13.35□□□□□ -0.27
COL28A1-203ENST00000435823 PLXNA1Q9UIW2 1896 aa13.34□□□□□ -0.27
COL28A1-203ENST00000435823 KLRF2D3W0D1 207 aa13.34□□□□□ -0.27
COL28A1-203ENST00000435823 EIF5BO60841 1220 aaKnown RBP13.34□□□□□ -0.27
COL28A1-203ENST00000435823 DDAH1O94760 285 aa13.34□□□□□ -0.27
COL28A1-203ENST00000435823 SGPL1O95470 568 aa13.34□□□□□ -0.27
COL28A1-203ENST00000435823 CYP2C19P33261 490 aa13.34□□□□□ -0.27
COL28A1-203ENST00000435823 LIFRP42702 1097 aa13.34□□□□□ -0.27
COL28A1-203ENST00000435823 CDC37Q16543 378 aaPredicted RBP13.34□□□□□ -0.27
COL28A1-203ENST00000435823 ZNF792Q3KQV3 632 aa13.34□□□□□ -0.27
COL28A1-203ENST00000435823 DHX32Q7L7V1 743 aaKnown RBP13.34□□□□□ -0.27
COL28A1-203ENST00000435823 RASEFQ8IZ41 740 aa13.34□□□□□ -0.27
COL28A1-203ENST00000435823 ADGRF4Q8IZF3 695 aa13.34□□□□□ -0.27
COL28A1-203ENST00000435823 CTCFLQ8NI51 663 aaPredicted RBP13.34□□□□□ -0.27
COL28A1-203ENST00000435823 U2AF1L4Q8WU68 220 aaKnown RBP13.34□□□□□ -0.27
COL28A1-203ENST00000435823 CPVLQ9H3G5 476 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms