RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 LPOP22079 712 aaPredicted RBP6.29□□□□□ -1.4
VPS13A-207ENST00000419472 SCNN1BP51168 640 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 IL2P60568 153 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 ADCY4Q8NFM4 1077 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 OR2W6PQ8NHA6 318 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 BTN2A2Q8WVV5 523 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 BRF1Q92994 677 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 WNK4Q96J92 1243 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 GPR101Q96P66 508 aaPredicted RBP6.29□□□□□ -1.4
VPS13A-207ENST00000419472 TRIM33Q9UPN9 1127 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 DMTF1Q9Y222 760 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 APOBEC2Q9Y235 224 aaKnown RBP6.29□□□□□ -1.4
VPS13A-207ENST00000419472 SPEF1Q9Y4P9 236 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 ABCA9Q8IUA7 1624 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 GRK4P32298 578 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 GPLD1P80108 840 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 UBAP2LQ14157 1087 aaKnown RBP6.29□□□□□ -1.4
VPS13A-207ENST00000419472 PRSS53Q2L4Q9 553 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 TUBB8Q3ZCM7 444 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 HEATR6Q6AI08 1181 aaKnown RBP6.29□□□□□ -1.4
VPS13A-207ENST00000419472 DPH2Q9BQC3 489 aaPredicted RBP6.29□□□□□ -1.4
VPS13A-207ENST00000419472 KLHL25Q9H0H3 589 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 C9orf78Q9NZ63 289 aaPredicted RBP6.29□□□□□ -1.4
VPS13A-207ENST00000419472 PCDHGB3Q9Y5G1 929 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 PCDHA9Q9Y5H5 950 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 TACC3Q9Y6A5 838 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 MAGI3Q5TCQ9 1506 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 KDM6BO15054 1643 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 CFAP74Q9C0B2 1584 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 FMN1Q68DA7 1419 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 DYTNA2CJ06 578 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 ZEB2O60315 1214 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 GRIK1P39086 918 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 HTRA3P83110 453 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 EFHC2Q5JST6 749 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 ADAT2Q7Z6V5 191 aaKnown RBP6.28□□□□□ -1.4
VPS13A-207ENST00000419472 SRLQ86TD4 932 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 CCDC86Q9H6F5 360 aaKnown RBP6.28□□□□□ -1.4
VPS13A-207ENST00000419472 ANKRD6Q9Y2G4 727 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 ANO9A1A5B4 782 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 TTC24A2A3L6 582 aaPredicted RBP6.28□□□□□ -1.4
VPS13A-207ENST00000419472 KLRG2A4D1S0 409 aaPredicted RBP6.28□□□□□ -1.4
VPS13A-207ENST00000419472 A6NNZ2 444 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 SOX1O00570 391 aaPredicted RBP6.28□□□□□ -1.4
VPS13A-207ENST00000419472 UBOX5O94941 541 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 GHRHP01286 108 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 SMPD1P17405 629 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 EPHA1P21709 976 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 PMS1P54277 932 aaKnown RBP6.28□□□□□ -1.4
VPS13A-207ENST00000419472 GABREP78334 506 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 TOGARAM2Q6ZUX3 1019 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 GJA10Q969M2 543 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 TCF7L1Q9HCS4 588 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 SPTLC3Q9NUV7 552 aa6.28□□□□□ -1.4
VPS13A-207ENST00000419472 RBAK-RBAKDNI3L0D1 243 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 BNIP3LO60238 219 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 GLRX3O76003 335 aaKnown RBP6.27□□□□□ -1.41
VPS13A-207ENST00000419472 FKBP9O95302 570 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 SOD2P04179 222 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 CTSBP07858 339 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 USP14P54578 494 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 ZNF280AP59817 542 aaPredicted RBP6.27□□□□□ -1.41
VPS13A-207ENST00000419472 TMEM201Q5SNT2 666 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 ZCCHC8Q6NZY4 707 aaKnown RBP6.27□□□□□ -1.41
VPS13A-207ENST00000419472 FKBP9P1Q75LS8 142 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 SMAP1Q8IYB5 467 aaPredicted RBP6.27□□□□□ -1.41
VPS13A-207ENST00000419472 PHACTR4Q8IZ21 702 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 ELMO3Q96BJ8 720 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 NAA15Q9BXJ9 866 aaKnown RBP6.27□□□□□ -1.41
VPS13A-207ENST00000419472 EMC7Q9NPA0 242 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 GTF2IRD1Q9UHL9 959 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 RCAN3Q9UKA8 241 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 CLIP1P30622 1438 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 TTLL8A6PVC2 850 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 TNFRSF10AO00220 468 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 SMNDC1O75940 238 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS13A-207ENST00000419472 SARSP49591 514 aaKnown RBP6.27□□□□□ -1.41
VPS13A-207ENST00000419472 IKBKEQ14164 716 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 PNMA8AQ86V59 439 aaPredicted RBP6.27□□□□□ -1.41
VPS13A-207ENST00000419472 SMC1BQ8NDV3 1235 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 RUNDC1Q96C34 613 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 TRMT2BQ96GJ1 504 aaKnown RBP6.27□□□□□ -1.41
VPS13A-207ENST00000419472 MAN1C1Q9NR34 630 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 C14orf119Q9NWQ9 140 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 MARK1Q9P0L2 795 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 SAMD15Q9P1V8 674 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 PNMA8BQ9ULN7 279 aaPredicted RBP6.27□□□□□ -1.41
VPS13A-207ENST00000419472 DYRK1BQ9Y463 629 aa6.27□□□□□ -1.41
VPS13A-207ENST00000419472 PCDHGA12O60330 932 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 UPP2O95045 317 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 LTFP02788 710 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 KCNA6P17658 529 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 DSG1Q02413 1049 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 ZNF267Q14586 743 aaPredicted RBP6.26□□□□□ -1.41
VPS13A-207ENST00000419472 PLA2G4EQ3MJ16 856 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 HDXQ7Z353 690 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 BVESQ8NE79 360 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 ABHD17AQ96GS6 310 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 MAGEB10Q96LZ2 347 aaPredicted RBP6.26□□□□□ -1.41
VPS13A-207ENST00000419472 SCLT1Q96NL6 688 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms