RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 OLFML2BQ68BL8 750 aa24.29■■□□□ 1.48
VSX1-204ENST00000409958 CCDC174Q6PII3 467 aa24.29■■□□□ 1.48
VSX1-204ENST00000409958 CHST3Q7LGC8 479 aa24.29■■□□□ 1.48
VSX1-204ENST00000409958 AGBL1Q96MI9 1066 aa24.29■■□□□ 1.48
VSX1-204ENST00000409958 XRN2Q9H0D6 950 aaKnown RBP eCLIP24.29■■□□□ 1.48
VSX1-204ENST00000409958 HMX1Q9NP08 348 aaPredicted RBP24.29■■□□□ 1.48
VSX1-204ENST00000409958 ZNFX1Q9P2E3 1918 aaKnown RBP24.28■■□□□ 1.48
VSX1-204ENST00000409958 IGHA2P01877 340 aa24.28■■□□□ 1.48
VSX1-204ENST00000409958 GOLGA8HP0CJ92 632 aa24.28■■□□□ 1.48
VSX1-204ENST00000409958 SNAP25P60880 206 aa24.28■■□□□ 1.48
VSX1-204ENST00000409958 CACNB2Q08289 660 aaPredicted RBP24.28■■□□□ 1.48
VSX1-204ENST00000409958 DIS3Q9Y2L1 958 aaKnown RBP24.28■■□□□ 1.48
VSX1-204ENST00000409958 ICAM1P05362 532 aa24.27■■□□□ 1.48
VSX1-204ENST00000409958 PARP1P09874 1014 aaKnown RBP24.27■■□□□ 1.48
VSX1-204ENST00000409958 CAPN2P17655 700 aa24.27■■□□□ 1.48
VSX1-204ENST00000409958 MCM5P33992 734 aa24.27■■□□□ 1.48
VSX1-204ENST00000409958 TSGA10IPQ3SY00 556 aa24.27■■□□□ 1.48
VSX1-204ENST00000409958 TMEM67Q5HYA8 995 aa24.27■■□□□ 1.48
VSX1-204ENST00000409958 IGDCC4Q8TDY8 1250 aa24.27■■□□□ 1.48
VSX1-204ENST00000409958 PNMA2Q9UL42 364 aa24.27■■□□□ 1.48
VSX1-204ENST00000409958 REC8O95072 547 aa24.26■■□□□ 1.47
VSX1-204ENST00000409958 SGPL1O95470 568 aa24.26■■□□□ 1.47
VSX1-204ENST00000409958 PGK2P07205 417 aa24.26■■□□□ 1.47
VSX1-204ENST00000409958 ZNF792Q3KQV3 632 aa24.26■■□□□ 1.47
VSX1-204ENST00000409958 U2AF1L4Q8WU68 220 aaKnown RBP24.26■■□□□ 1.47
VSX1-204ENST00000409958 DDX11Q96FC9 970 aa24.26■■□□□ 1.47
VSX1-204ENST00000409958 MAML3Q96JK9 1138 aa24.26■■□□□ 1.47
VSX1-204ENST00000409958 ACAD9Q9H845 621 aa24.26■■□□□ 1.47
VSX1-204ENST00000409958 HOMER2Q9NSB8 354 aa24.26■■□□□ 1.47
VSX1-204ENST00000409958 RNF146Q9NTX7 359 aa24.26■■□□□ 1.47
VSX1-204ENST00000409958 CCPG1Q9ULG6 757 aa24.26■■□□□ 1.47
VSX1-204ENST00000409958 PRC1O43663 620 aa24.25■■□□□ 1.47
VSX1-204ENST00000409958 ALAS1P13196 640 aa24.25■■□□□ 1.47
VSX1-204ENST00000409958 ANKRD35Q8N283 1001 aa24.25■■□□□ 1.47
VSX1-204ENST00000409958 SHISA4Q96DD7 197 aa24.25■■□□□ 1.47
VSX1-204ENST00000409958 TMEM87BQ96K49 555 aa24.25■■□□□ 1.47
VSX1-204ENST00000409958 DEFB118Q96PH6 123 aa24.25■■□□□ 1.47
VSX1-204ENST00000409958 TRERF1Q96PN7 1200 aa24.25■■□□□ 1.47
VSX1-204ENST00000409958 UBA5Q9GZZ9 404 aa24.25■■□□□ 1.47
VSX1-204ENST00000409958 SENP2Q9HC62 589 aa24.25■■□□□ 1.47
VSX1-204ENST00000409958 DNAJC25-GNG10A0A024R161 153 aa24.24■■□□□ 1.47
VSX1-204ENST00000409958 RASEFQ8IZ41 740 aa24.24■■□□□ 1.47
VSX1-204ENST00000409958 WDR19Q8NEZ3 1342 aa24.23■■□□□ 1.47
VSX1-204ENST00000409958 CYP2C19P33261 490 aa24.23■■□□□ 1.47
VSX1-204ENST00000409958 KRT32Q14532 448 aa24.23■■□□□ 1.47
VSX1-204ENST00000409958 CATIPQ7Z7H3 387 aa24.23■■□□□ 1.47
VSX1-204ENST00000409958 TMTC2Q8N394 836 aa24.23■■□□□ 1.47
VSX1-204ENST00000409958 KCNB2Q92953 911 aa24.23■■□□□ 1.47
VSX1-204ENST00000409958 CRISPLD2Q9H0B8 497 aa24.23■■□□□ 1.47
VSX1-204ENST00000409958 CPVLQ9H3G5 476 aa24.23■■□□□ 1.47
VSX1-204ENST00000409958 LY9Q9HBG7 655 aa24.23■■□□□ 1.47
VSX1-204ENST00000409958 PALM3A6NDB9 673 aaPredicted RBP24.22■■□□□ 1.47
VSX1-204ENST00000409958 EPB41L2O43491 1005 aaKnown RBP24.22■■□□□ 1.47
VSX1-204ENST00000409958 CCND3P30281 292 aaPredicted RBP24.22■■□□□ 1.47
VSX1-204ENST00000409958 HSPA4P34932 840 aa24.22■■□□□ 1.47
VSX1-204ENST00000409958 TROAPQ12815 778 aa24.22■■□□□ 1.47
VSX1-204ENST00000409958 COL9A3Q14050 684 aaPredicted RBP24.22■■□□□ 1.47
VSX1-204ENST00000409958 GRM4Q14833 912 aa24.22■■□□□ 1.47
VSX1-204ENST00000409958 ADGRF4Q8IZF3 695 aa24.22■■□□□ 1.47
VSX1-204ENST00000409958 NEK1Q96PY6 1258 aa24.22■■□□□ 1.47
VSX1-204ENST00000409958 MAD2L2Q9UI95 211 aa24.22■■□□□ 1.47
VSX1-204ENST00000409958 SH2B2O14492 632 aaPredicted RBP24.21■■□□□ 1.47
VSX1-204ENST00000409958 STAG2Q8N3U4 1231 aa24.21■■□□□ 1.47
VSX1-204ENST00000409958 MSL3Q8N5Y2 521 aaKnown RBP24.21■■□□□ 1.47
VSX1-204ENST00000409958 TINF2Q9BSI4 451 aa24.21■■□□□ 1.47
VSX1-204ENST00000409958 A1CFQ9NQ94 594 aaKnown RBP24.21■■□□□ 1.47
VSX1-204ENST00000409958 PLXNA1Q9UIW2 1896 aa24.21■■□□□ 1.47
VSX1-204ENST00000409958 TNRC18O15417 2968 aaPredicted RBP24.21■■□□□ 1.47
VSX1-204ENST00000409958 SMCHD1A6NHR9 2005 aa24.2■■□□□ 1.47
VSX1-204ENST00000409958 PFASO15067 1338 aa24.2■■□□□ 1.47
VSX1-204ENST00000409958 KLRF2D3W0D1 207 aa24.2■■□□□ 1.46
VSX1-204ENST00000409958 TFRCP02786 760 aaKnown RBP24.2■■□□□ 1.46
VSX1-204ENST00000409958 CYBAP13498 195 aa24.2■■□□□ 1.46
VSX1-204ENST00000409958 LIFRP42702 1097 aa24.2■■□□□ 1.46
VSX1-204ENST00000409958 CDC37Q16543 378 aaPredicted RBP24.2■■□□□ 1.46
VSX1-204ENST00000409958 MUM1L1Q5H9M0 696 aa24.2■■□□□ 1.46
VSX1-204ENST00000409958 ZNF467Q7Z7K2 595 aaPredicted RBP24.2■■□□□ 1.46
VSX1-204ENST00000409958 GPHNQ9NQX3 736 aaPredicted RBP24.2■■□□□ 1.46
VSX1-204ENST00000409958 TAL1P17542 331 aaPredicted RBP24.19■■□□□ 1.46
VSX1-204ENST00000409958 ADCK5Q3MIX3 580 aa24.19■■□□□ 1.46
VSX1-204ENST00000409958 TRPV1Q8NER1 839 aa24.19■■□□□ 1.46
VSX1-204ENST00000409958 MAP3K14Q99558 947 aa24.19■■□□□ 1.46
VSX1-204ENST00000409958 JMJD4Q9H9V9 463 aa24.19■■□□□ 1.46
VSX1-204ENST00000409958 NRBP1Q9UHY1 535 aa24.19■■□□□ 1.46
VSX1-204ENST00000409958 POTEB2H3BUK9 544 aa24.18■■□□□ 1.46
VSX1-204ENST00000409958 DHX16O60231 1041 aaKnown RBP24.18■■□□□ 1.46
VSX1-204ENST00000409958 DDAH1O94760 285 aa24.18■■□□□ 1.46
VSX1-204ENST00000409958 MAMDC4Q6UXC1 1216 aa24.18■■□□□ 1.46
VSX1-204ENST00000409958 DHX32Q7L7V1 743 aaKnown RBP24.18■■□□□ 1.46
VSX1-204ENST00000409958 ZNF654Q8IZM8 581 aa24.18■■□□□ 1.46
VSX1-204ENST00000409958 FAM133AQ8N9E0 248 aa24.18■■□□□ 1.46
VSX1-204ENST00000409958 CYP39A1Q9NYL5 469 aa24.18■■□□□ 1.46
VSX1-204ENST00000409958 MKI67P46013 3256 aaKnown RBP24.17■■□□□ 1.46
VSX1-204ENST00000409958 CCDC69A6NI79 296 aa24.17■■□□□ 1.46
VSX1-204ENST00000409958 MSCO60682 206 aa24.17■■□□□ 1.46
VSX1-204ENST00000409958 HMGB1P09429 215 aaKnown RBP24.17■■□□□ 1.46
VSX1-204ENST00000409958 EXOSC10Q01780 885 aaKnown RBP24.17■■□□□ 1.46
VSX1-204ENST00000409958 LHX8Q68G74 356 aa24.17■■□□□ 1.46
VSX1-204ENST00000409958 NFXL1Q6ZNB6 911 aa24.17■■□□□ 1.46
VSX1-204ENST00000409958 NUP133Q8WUM0 1156 aa24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms