RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 PLXNA1Q9UIW2 1896 aa15.84■□□□□ 0.13
VCX3A-202ENST00000398729 NOVP48745 357 aa15.83■□□□□ 0.12
VCX3A-202ENST00000398729 RTP1P59025 263 aa15.83■□□□□ 0.12
VCX3A-202ENST00000398729 AKNAD1Q5T1N1 836 aa15.83■□□□□ 0.12
VCX3A-202ENST00000398729 RCSD1Q6JBY9 416 aa15.83■□□□□ 0.12
VCX3A-202ENST00000398729 MFSD6Q6ZSS7 791 aa15.83■□□□□ 0.12
VCX3A-202ENST00000398729 STAG1Q8WVM7 1258 aa15.83■□□□□ 0.12
VCX3A-202ENST00000398729 DDX11Q96FC9 970 aa15.83■□□□□ 0.12
VCX3A-202ENST00000398729 RNF41Q9H4P4 317 aaPredicted RBP15.83■□□□□ 0.12
VCX3A-202ENST00000398729 NRBP1Q9UHY1 535 aa15.83■□□□□ 0.12
VCX3A-202ENST00000398729 DNM1LO00429 736 aa15.82■□□□□ 0.12
VCX3A-202ENST00000398729 PLA2G6O60733 806 aa15.82■□□□□ 0.12
VCX3A-202ENST00000398729 PRAMEF19Q5SWL8 479 aa15.82■□□□□ 0.12
VCX3A-202ENST00000398729 C9orf50Q5SZB4 431 aa15.82■□□□□ 0.12
VCX3A-202ENST00000398729 GJC2Q5T442 439 aaPredicted RBP15.82■□□□□ 0.12
VCX3A-202ENST00000398729 SLC39A5Q6ZMH5 540 aa15.82■□□□□ 0.12
VCX3A-202ENST00000398729 KCTD1Q719H9 257 aa15.82■□□□□ 0.12
VCX3A-202ENST00000398729 ARRDC4Q8NCT1 418 aa15.82■□□□□ 0.12
VCX3A-202ENST00000398729 CHST13Q8NET6 341 aa15.82■□□□□ 0.12
VCX3A-202ENST00000398729 CHMP4CQ96CF2 233 aa15.82■□□□□ 0.12
VCX3A-202ENST00000398729 TINF2Q9BSI4 451 aa15.82■□□□□ 0.12
VCX3A-202ENST00000398729 TCP11L1Q9NUJ3 509 aa15.82■□□□□ 0.12
VCX3A-202ENST00000398729 FBXO40Q9UH90 709 aa15.82■□□□□ 0.12
VCX3A-202ENST00000398729 MTMR7Q9Y216 660 aa15.82■□□□□ 0.12
VCX3A-202ENST00000398729 ZNF213O14771 459 aa15.81■□□□□ 0.12
VCX3A-202ENST00000398729 TOP1P11387 765 aaKnown RBP15.81■□□□□ 0.12
VCX3A-202ENST00000398729 CCDC96Q2M329 555 aa15.81■□□□□ 0.12
VCX3A-202ENST00000398729 ANO1Q5XXA6 986 aa15.81■□□□□ 0.12
VCX3A-202ENST00000398729 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.81■□□□□ 0.12
VCX3A-202ENST00000398729 DCAF4Q8WV16 495 aa15.81■□□□□ 0.12
VCX3A-202ENST00000398729 DNAJC25-GNG10A0A024R161 153 aa15.8■□□□□ 0.12
VCX3A-202ENST00000398729 PDE4AP27815 886 aa15.8■□□□□ 0.12
VCX3A-202ENST00000398729 TTC22Q5TAA0 569 aa15.8■□□□□ 0.12
VCX3A-202ENST00000398729 ZNF697Q5TEC3 545 aa15.8■□□□□ 0.12
VCX3A-202ENST00000398729 TBC1D10CQ8IV04 446 aa15.8■□□□□ 0.12
VCX3A-202ENST00000398729 ANKRD35Q8N283 1001 aa15.8■□□□□ 0.12
VCX3A-202ENST00000398729 MSL3Q8N5Y2 521 aaKnown RBP15.8■□□□□ 0.12
VCX3A-202ENST00000398729 ESR2Q92731 530 aa15.8■□□□□ 0.12
VCX3A-202ENST00000398729 TTC14Q96N46 770 aa15.8■□□□□ 0.12
VCX3A-202ENST00000398729 DSCC1Q9BVC3 393 aa15.8■□□□□ 0.12
VCX3A-202ENST00000398729 TTYH1Q9H313 450 aaPredicted RBP15.8■□□□□ 0.12
VCX3A-202ENST00000398729 CNPY2Q9Y2B0 182 aa15.8■□□□□ 0.12
VCX3A-202ENST00000398729 ATP11BQ9Y2G3 1177 aa15.8■□□□□ 0.12
VCX3A-202ENST00000398729 SYNGAP1Q96PV0 1343 aa15.79■□□□□ 0.12
VCX3A-202ENST00000398729 TRIM43BA6NCK2 446 aa15.79■□□□□ 0.12
VCX3A-202ENST00000398729 KBTBD13C9JR72 458 aa15.79■□□□□ 0.12
VCX3A-202ENST00000398729 NT5C2P49902 561 aa15.79■□□□□ 0.12
VCX3A-202ENST00000398729 SH3RF1Q7Z6J0 888 aa15.79■□□□□ 0.12
VCX3A-202ENST00000398729 ZNF467Q7Z7K2 595 aaPredicted RBP15.79■□□□□ 0.12
VCX3A-202ENST00000398729 BADQ92934 168 aa15.79■□□□□ 0.12
VCX3A-202ENST00000398729 TRIM43Q96BQ3 446 aaPredicted RBP15.79■□□□□ 0.12
VCX3A-202ENST00000398729 TMEM47Q9BQJ4 181 aa15.79■□□□□ 0.12
VCX3A-202ENST00000398729 ACAD9Q9H845 621 aa15.79■□□□□ 0.12
VCX3A-202ENST00000398729 HOMER2Q9NSB8 354 aa15.79■□□□□ 0.12
VCX3A-202ENST00000398729 PRKAG2Q9UGJ0 569 aa15.79■□□□□ 0.12
VCX3A-202ENST00000398729 CTNNA3Q9UI47 895 aa15.79■□□□□ 0.12
VCX3A-202ENST00000398729 PRR12Q9ULL5 1215 aa15.79■□□□□ 0.12
VCX3A-202ENST00000398729 LAMA4Q16363 1823 aa15.79■□□□□ 0.12
VCX3A-202ENST00000398729 ZNF536O15090 1300 aa15.78■□□□□ 0.12
VCX3A-202ENST00000398729 MYCNP04198 464 aaPredicted RBP15.78■□□□□ 0.12
VCX3A-202ENST00000398729 RARBP10826 455 aa15.78■□□□□ 0.12
VCX3A-202ENST00000398729 GSPT1P15170 499 aaKnown RBP15.78■□□□□ 0.12
VCX3A-202ENST00000398729 SNX17Q15036 470 aa15.78■□□□□ 0.12
VCX3A-202ENST00000398729 IMMTQ16891 758 aaKnown RBP15.78■□□□□ 0.12
VCX3A-202ENST00000398729 TKFCQ3LXA3 575 aa15.78■□□□□ 0.12
VCX3A-202ENST00000398729 MAMDC4Q6UXC1 1216 aa15.78■□□□□ 0.12
VCX3A-202ENST00000398729 RASGRP2Q7LDG7 609 aa15.78■□□□□ 0.12
VCX3A-202ENST00000398729 AGBL1Q96MI9 1066 aa15.78■□□□□ 0.12
VCX3A-202ENST00000398729 SMCHD1A6NHR9 2005 aa15.77■□□□□ 0.12
VCX3A-202ENST00000398729 NEDD4P46934 1319 aa15.77■□□□□ 0.12
VCX3A-202ENST00000398729 ZNF865P0CJ78 1059 aaPredicted RBP15.77■□□□□ 0.12
VCX3A-202ENST00000398729 ALAS1P13196 640 aa15.77■□□□□ 0.12
VCX3A-202ENST00000398729 AKR1A1P14550 325 aa15.77■□□□□ 0.12
VCX3A-202ENST00000398729 TAL1P17542 331 aaPredicted RBP15.77■□□□□ 0.12
VCX3A-202ENST00000398729 ITGB8P26012 769 aa15.77■□□□□ 0.12
VCX3A-202ENST00000398729 TRIM60Q495X7 471 aa15.77■□□□□ 0.12
VCX3A-202ENST00000398729 CCDC174Q6PII3 467 aa15.77■□□□□ 0.12
VCX3A-202ENST00000398729 IQCA1Q86XH1 822 aa15.77■□□□□ 0.12
VCX3A-202ENST00000398729 MAFAQ8NHW3 353 aaPredicted RBP15.77■□□□□ 0.12
VCX3A-202ENST00000398729 MYLIPQ8WY64 445 aa15.77■□□□□ 0.12
VCX3A-202ENST00000398729 RNF146Q9NTX7 359 aa15.77■□□□□ 0.12
VCX3A-202ENST00000398729 FRMPD2Q68DX3 1309 aaPredicted RBP15.76■□□□□ 0.11
VCX3A-202ENST00000398729 LTBP2Q14767 1821 aa15.76■□□□□ 0.11
VCX3A-202ENST00000398729 SNAI1O95863 264 aaPredicted RBP15.76■□□□□ 0.11
VCX3A-202ENST00000398729 PDHBP11177 359 aa15.76■□□□□ 0.11
VCX3A-202ENST00000398729 SLC16A2P36021 539 aa15.76■□□□□ 0.11
VCX3A-202ENST00000398729 ADCYAP1R1P41586 468 aa15.76■□□□□ 0.11
VCX3A-202ENST00000398729 SNAP25P60880 206 aa15.76■□□□□ 0.11
VCX3A-202ENST00000398729 SMAD3P84022 425 aaKnown RBP15.76■□□□□ 0.11
VCX3A-202ENST00000398729 LRRC41Q15345 812 aa15.76■□□□□ 0.11
VCX3A-202ENST00000398729 CCDC178Q5BJE1 867 aa15.76■□□□□ 0.11
VCX3A-202ENST00000398729 SYDE2Q5VT97 1194 aa15.76■□□□□ 0.11
VCX3A-202ENST00000398729 TTBK2Q6IQ55 1244 aa15.76■□□□□ 0.11
VCX3A-202ENST00000398729 BTNL9Q6UXG8 535 aa15.76■□□□□ 0.11
VCX3A-202ENST00000398729 RUFY2Q8WXA3 655 aa15.76■□□□□ 0.11
VCX3A-202ENST00000398729 FERMT2Q96AC1 680 aa15.76■□□□□ 0.11
VCX3A-202ENST00000398729 TRERF1Q96PN7 1200 aa15.76■□□□□ 0.11
VCX3A-202ENST00000398729 GPCPD1Q9NPB8 672 aa15.76■□□□□ 0.11
VCX3A-202ENST00000398729 XPNPEP3Q9NQH7 507 aa15.76■□□□□ 0.11
VCX3A-202ENST00000398729 PDLIM7Q9NR12 457 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms