RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 TFAP4Q01664 338 aa12.26□□□□□ -0.45
NEDD8-202ENST00000396828 ZMYM1Q5SVZ6 1142 aa12.26□□□□□ -0.45
NEDD8-202ENST00000396828 TTC22Q5TAA0 569 aa12.26□□□□□ -0.45
NEDD8-202ENST00000396828 FAM109BQ6ICB4 259 aaPredicted RBP12.26□□□□□ -0.45
NEDD8-202ENST00000396828 RNF180Q86T96 592 aa12.26□□□□□ -0.45
NEDD8-202ENST00000396828 KLHDC9Q8NEP7 349 aa12.26□□□□□ -0.45
NEDD8-202ENST00000396828 NEDD1Q8NHV4 660 aa12.26□□□□□ -0.45
NEDD8-202ENST00000396828 DDX11Q96FC9 970 aa12.26□□□□□ -0.45
NEDD8-202ENST00000396828 IL17RBQ9NRM6 502 aa12.26□□□□□ -0.45
NEDD8-202ENST00000396828 HOMER2Q9NSB8 354 aa12.26□□□□□ -0.45
NEDD8-202ENST00000396828 ZHX1Q9UKY1 873 aaPredicted RBP12.26□□□□□ -0.45
NEDD8-202ENST00000396828 SALL3Q9BXA9 1300 aa12.26□□□□□ -0.45
NEDD8-202ENST00000396828 ZBED4O75132 1171 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 TTLL1O95922 423 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 CLTBP09497 229 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 TSPY3P0CV98 308 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 TSPY8P0CW00 308 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 BMP3P12645 472 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 COPB2P35606 906 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 ACLYP53396 1101 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 SNAP25P60880 206 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 CNTN2Q02246 1040 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 CTDSPL2Q05D32 466 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 PPARAQ07869 468 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 FAAP100Q0VG06 881 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 KCNA10Q16322 511 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 BMP2KLQ5H9B9 411 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 VPS53Q5VIR6 699 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 SLFN13Q68D06 897 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 GMCL1P1Q8NEA9 526 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 AGBL1Q96MI9 1066 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 FSD1Q9BTV5 496 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 KATNBL1Q9H079 304 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 TTYH1Q9H313 450 aaPredicted RBP12.25□□□□□ -0.45
NEDD8-202ENST00000396828 CNPY2Q9Y2B0 182 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 ZNF536O15090 1300 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 SYNGAP1Q96PV0 1343 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 CHD7Q9P2D1 2997 aa12.25□□□□□ -0.45
NEDD8-202ENST00000396828 TMEM232C9JQI7 657 aa12.24□□□□□ -0.45
NEDD8-202ENST00000396828 ASTN1O14525 1302 aa12.24□□□□□ -0.45
NEDD8-202ENST00000396828 KIAA0355O15063 1070 aa12.24□□□□□ -0.45
NEDD8-202ENST00000396828 CTAGE5O15320 804 aa12.24□□□□□ -0.45
NEDD8-202ENST00000396828 MCCP23508 829 aa12.24□□□□□ -0.45
NEDD8-202ENST00000396828 ACVR2BQ13705 512 aa12.24□□□□□ -0.45
NEDD8-202ENST00000396828 CCDC144BQ3MJ40 725 aa12.24□□□□□ -0.45
NEDD8-202ENST00000396828 TMEM63BQ5T3F8 832 aa12.24□□□□□ -0.45
NEDD8-202ENST00000396828 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.24□□□□□ -0.45
NEDD8-202ENST00000396828 ANKRD35Q8N283 1001 aa12.24□□□□□ -0.45
NEDD8-202ENST00000396828 PLIN4Q96Q06 1357 aa12.24□□□□□ -0.45
NEDD8-202ENST00000396828 CDX2Q99626 313 aaPredicted RBP12.24□□□□□ -0.45
NEDD8-202ENST00000396828 SEMA6BQ9H3T3 888 aa12.24□□□□□ -0.45
NEDD8-202ENST00000396828 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.24□□□□□ -0.45
NEDD8-202ENST00000396828 FEM1BQ9UK73 627 aa12.24□□□□□ -0.45
NEDD8-202ENST00000396828 FAM184BQ9ULE4 1060 aa12.24□□□□□ -0.45
NEDD8-202ENST00000396828 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.24□□□□□ -0.45
NEDD8-202ENST00000396828 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.23□□□□□ -0.45
NEDD8-202ENST00000396828 SOWAHBA6NEL2 793 aa12.23□□□□□ -0.45
NEDD8-202ENST00000396828 KCTD1Q719H9 257 aa12.23□□□□□ -0.45
NEDD8-202ENST00000396828 ARMCX2Q7L311 632 aa12.23□□□□□ -0.45
NEDD8-202ENST00000396828 ANKRD33Q7Z3H0 272 aa12.23□□□□□ -0.45
NEDD8-202ENST00000396828 ZNF467Q7Z7K2 595 aaPredicted RBP12.23□□□□□ -0.45
NEDD8-202ENST00000396828 CCDC144CPQ8IYA2 1237 aa12.23□□□□□ -0.45
NEDD8-202ENST00000396828 MSL3Q8N5Y2 521 aaKnown RBP12.23□□□□□ -0.45
NEDD8-202ENST00000396828 FAM133AQ8N9E0 248 aa12.23□□□□□ -0.45
NEDD8-202ENST00000396828 PURBQ96QR8 312 aaKnown RBP12.23□□□□□ -0.45
NEDD8-202ENST00000396828 TSEN34Q9BSV6 310 aaKnown RBP12.23□□□□□ -0.45
NEDD8-202ENST00000396828 NAPBQ9H115 298 aa12.23□□□□□ -0.45
NEDD8-202ENST00000396828 STARD7Q9NQZ5 370 aa12.23□□□□□ -0.45
NEDD8-202ENST00000396828 TMEM39AQ9NV64 488 aa12.23□□□□□ -0.45
NEDD8-202ENST00000396828 XIRP2A4UGR9 3374 aa12.22□□□□□ -0.45
NEDD8-202ENST00000396828 LCTP09848 1927 aa12.22□□□□□ -0.45
NEDD8-202ENST00000396828 TRIM6-TRIM34B2RNG4 842 aa12.22□□□□□ -0.45
NEDD8-202ENST00000396828 DUSP11O75319 330 aaKnown RBP12.22□□□□□ -0.45
NEDD8-202ENST00000396828 RAG1P15918 1043 aa12.22□□□□□ -0.45
NEDD8-202ENST00000396828 CDK7P50613 346 aa12.22□□□□□ -0.45
NEDD8-202ENST00000396828 PDE4BQ07343 736 aa12.22□□□□□ -0.45
NEDD8-202ENST00000396828 MUM1L1Q5H9M0 696 aa12.22□□□□□ -0.45
NEDD8-202ENST00000396828 ZNF697Q5TEC3 545 aa12.22□□□□□ -0.45
NEDD8-202ENST00000396828 C16orf59Q7L2K0 433 aa12.22□□□□□ -0.45
NEDD8-202ENST00000396828 CHST13Q8NET6 341 aa12.22□□□□□ -0.45
NEDD8-202ENST00000396828 NACAP1Q9BZK3 213 aa12.22□□□□□ -0.45
NEDD8-202ENST00000396828 ABHD16BQ9H3Z7 469 aa12.22□□□□□ -0.45
NEDD8-202ENST00000396828 ZNF287Q9HBT7 754 aa12.22□□□□□ -0.45
NEDD8-202ENST00000396828 A1CFQ9NQ94 594 aaKnown RBP12.22□□□□□ -0.45
NEDD8-202ENST00000396828 CTDP1Q9Y5B0 961 aaPredicted RBP12.22□□□□□ -0.45
NEDD8-202ENST00000396828 ASGR1P07306 291 aa12.21□□□□□ -0.45
NEDD8-202ENST00000396828 C6orf222P0C671 652 aaPredicted RBP12.21□□□□□ -0.45
NEDD8-202ENST00000396828 STAT2P52630 851 aa12.21□□□□□ -0.45
NEDD8-202ENST00000396828 OAZ1P54368 228 aa12.21□□□□□ -0.45
NEDD8-202ENST00000396828 GJA9P57773 515 aa12.21□□□□□ -0.45
NEDD8-202ENST00000396828 SMAD3P84022 425 aaKnown RBP12.21□□□□□ -0.45
NEDD8-202ENST00000396828 BEX3Q00994 111 aa12.21□□□□□ -0.45
NEDD8-202ENST00000396828 CCDC174Q6PII3 467 aa12.21□□□□□ -0.45
NEDD8-202ENST00000396828 CASC1Q6TDU7 716 aa12.21□□□□□ -0.45
NEDD8-202ENST00000396828 STAG1Q8WVM7 1258 aa12.21□□□□□ -0.45
NEDD8-202ENST00000396828 MYLIPQ8WY64 445 aa12.21□□□□□ -0.45
NEDD8-202ENST00000396828 GMCL1Q96IK5 515 aa12.21□□□□□ -0.45
NEDD8-202ENST00000396828 TOX2Q96NM4 488 aa12.21□□□□□ -0.45
NEDD8-202ENST00000396828 COL25A1Q9BXS0 654 aaPredicted RBP12.21□□□□□ -0.45
NEDD8-202ENST00000396828 UPF3AQ9H1J1 476 aaKnown RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms