RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 PSMD1Q99460 953 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 HINFPQ9BQA5 517 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 ACTR5Q9H9F9 607 aaPredicted RBP14.12□□□□□ -0.15
COL3A1-201ENST00000304636 METTL14Q9HCE5 456 aaKnown RBP14.12□□□□□ -0.15
COL3A1-201ENST00000304636 PANK4Q9NVE7 773 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 MYO1CO00159 1063 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 IRX4P78413 519 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 DCUN1D2Q6PH85 259 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 SLC39A2Q9NP94 309 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 CEP170Q5SW79 1584 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 POLA2Q14181 598 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 ARID5BQ14865 1188 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 ANKRD13CQ8N6S4 541 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 KIFC2Q96AC6 838 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 BPIFA3Q9BQP9 254 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 SAMSN1Q9NSI8 373 aaKnown RBP14.11□□□□□ -0.15
COL3A1-201ENST00000304636 INTS9Q9NV88 658 aaKnown RBP14.11□□□□□ -0.15
COL3A1-201ENST00000304636 ADAM21Q9UKJ8 722 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 RTCBQ9Y3I0 505 aaKnown RBP14.11□□□□□ -0.15
COL3A1-201ENST00000304636 USP17L12C9JPN9 530 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 USP17L21D6R901 530 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 PTPN21Q16825 1174 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 LRRC24Q50LG9 513 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 BCAP29Q9UHQ4 241 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 MAST3O60307 1309 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 ATP7BP35670 1465 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 CLGNO14967 610 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 C2orf54Q08AI8 447 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 NNTQ13423 1086 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 CC2D1AQ6P1N0 951 aaPredicted RBP14.11□□□□□ -0.15
COL3A1-201ENST00000304636 STAG1Q8WVM7 1258 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 PKD2L1Q9P0L9 805 aa14.11□□□□□ -0.15
COL3A1-201ENST00000304636 DKC1O60832 514 aaKnown RBP eCLIP14.1□□□□□ -0.15
COL3A1-201ENST00000304636 MYL1P05976 194 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 PHBP35232 272 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 ADCY8P40145 1251 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 LRCH2Q5VUJ6 765 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 CPSF1Q10570 1443 aaKnown RBP14.1□□□□□ -0.15
COL3A1-201ENST00000304636 TXNDC9O14530 226 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 GMNNO75496 209 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 NDUFA10O95299 355 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 OSBPL5Q9H0X9 879 aaPredicted RBP14.1□□□□□ -0.15
COL3A1-201ENST00000304636 MMP1P03956 469 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 STRN3Q13033 797 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 KMT5BQ4FZB7 885 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 SEPT14Q6ZU15 432 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 CCDC89Q8N998 374 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 BBOF1Q8ND07 529 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 THAP12O43422 761 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 ATP1A3P13637 1013 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 MAP3K21Q5TCX8 1036 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 ZNF354CQ86Y25 554 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 P2RX5Q93086 422 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 EYA3Q99504 573 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 PASKQ96RG2 1323 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 SLC1A4P43007 532 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 ADAM9Q13443 819 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 CEP120Q8N960 986 aa14.1□□□□□ -0.15
COL3A1-201ENST00000304636 CNOT10Q9H9A5 744 aaKnown RBP14.1□□□□□ -0.15
COL3A1-201ENST00000304636 IRX5P78411 483 aaPredicted RBP14.09□□□□□ -0.15
COL3A1-201ENST00000304636 AP1ARQ63HQ0 302 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 ODF2LQ9ULJ1 636 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 M0R2C6 588 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 ZBED6P86452 979 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 TRPC3Q13507 836 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 FAM26FQ5R3K3 315 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 RPUSD2Q8IZ73 545 aaKnown RBP14.09□□□□□ -0.15
COL3A1-201ENST00000304636 RILPQ96NA2 401 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 RIC8AQ9NPQ8 531 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 ZDHHC9Q9Y397 364 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 USH1CQ9Y6N9 552 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 N4BP1O75113 896 aaKnown RBP14.09□□□□□ -0.15
COL3A1-201ENST00000304636 STK10O94804 968 aaKnown RBP14.09□□□□□ -0.15
COL3A1-201ENST00000304636 MAP7Q14244 749 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 SMYD4Q8IYR2 804 aaPredicted RBP14.09□□□□□ -0.15
COL3A1-201ENST00000304636 PNMA1Q8ND90 353 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 WHAMMQ8TF30 809 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 PCDHA12Q9UN75 941 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 SRPRBQ9Y5M8 271 aaKnown RBP14.09□□□□□ -0.15
COL3A1-201ENST00000304636 ABCC12Q96J65 1359 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 PBRM1Q86U86 1689 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 MCTP2Q6DN12 878 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 AFAP1L2Q8N4X5 818 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 RBM17Q96I25 401 aaKnown RBP14.09□□□□□ -0.15
COL3A1-201ENST00000304636 AK8Q96MA6 479 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 THAP9Q9H5L6 903 aa14.09□□□□□ -0.15
COL3A1-201ENST00000304636 LRRD1A4D1F6 860 aa14.08□□□□□ -0.15
COL3A1-201ENST00000304636 NHEJ1Q9H9Q4 299 aaPredicted RBP14.08□□□□□ -0.15
COL3A1-201ENST00000304636 RIMBP2O15034 1052 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 EVI5O60447 810 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 MFAP3LO75121 409 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 UFL1O94874 794 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 EMBQ6PCB8 327 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 GRAMD1CQ8IYS0 662 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 ZBTB38Q8NAP3 1195 aaPredicted RBP14.08□□□□□ -0.16
COL3A1-201ENST00000304636 ZNF526Q8TF50 670 aaPredicted RBP14.08□□□□□ -0.16
COL3A1-201ENST00000304636 ERVV-2B6SEH9 535 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 COBLO75128 1261 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 PCCAP05165 728 aaPredicted RBP14.08□□□□□ -0.16
COL3A1-201ENST00000304636 PALM2Q8IXS6 379 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms