RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 BLVRAP53004 296 aa11.35□□□□□ -0.59
CLIP1-201ENST00000302528 MYSM1Q5VVJ2 828 aa11.35□□□□□ -0.59
CLIP1-201ENST00000302528 CNBD1Q8NA66 436 aa11.35□□□□□ -0.59
CLIP1-201ENST00000302528 TESK2Q96S53 571 aa11.35□□□□□ -0.59
CLIP1-201ENST00000302528 GCC2Q8IWJ2 1684 aa11.35□□□□□ -0.59
CLIP1-201ENST00000302528 NSD2O96028 1365 aa11.35□□□□□ -0.59
CLIP1-201ENST00000302528 LIG3P49916 1009 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 TMED1Q13445 227 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 PTPROQ16827 1216 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 CWF19L2Q2TBE0 894 aaKnown RBP11.34□□□□□ -0.59
CLIP1-201ENST00000302528 ACBD5Q5T8D3 534 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-201ENST00000302528 PRPF38AQ8NAV1 312 aaKnown RBP11.34□□□□□ -0.59
CLIP1-201ENST00000302528 CBX8Q9HC52 389 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 LMCD1Q9NZU5 365 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-201ENST00000302528 ANGEL1Q9UNK9 670 aaKnown RBP11.34□□□□□ -0.59
CLIP1-201ENST00000302528 BRD3Q15059 726 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 GNPTABQ3T906 1256 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 ADAT2Q7Z6V5 191 aaKnown RBP11.34□□□□□ -0.59
CLIP1-201ENST00000302528 POC1B-GALNT4F8VUJ3 575 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 RLBP1P12271 317 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 MAP3K7CLP57077 242 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 IL9RQ01113 521 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 KRT80Q6KB66 452 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 TRMT10CQ7L0Y3 403 aaKnown RBP11.34□□□□□ -0.59
CLIP1-201ENST00000302528 CDC26Q8NHZ8 85 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 BCAS4Q8TDM0 211 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 FBXO41Q8TF61 875 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 NRBF2Q96F24 287 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 SPATS2LQ9NUQ6 558 aaKnown RBP11.34□□□□□ -0.59
CLIP1-201ENST00000302528 ABCF3Q9NUQ8 709 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 ZNF608Q9ULD9 1512 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-201ENST00000302528 SUN1O94901 812 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 SLC4A1P02730 911 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 FOXD4Q12950 439 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-201ENST00000302528 TRAPPC3LQ5T215 181 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 TTC1Q99614 292 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 LZTS2Q9BRK4 669 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 GGA1Q9UJY5 639 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 CPA1P15085 419 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 KIF22Q14807 665 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 PUM3Q15397 648 aaKnown RBP11.34□□□□□ -0.59
CLIP1-201ENST00000302528 TTBK2Q6IQ55 1244 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 MAP7D3Q8IWC1 876 aa11.34□□□□□ -0.59
CLIP1-201ENST00000302528 TRMT44Q8IYL2 757 aaKnown RBP11.34□□□□□ -0.59
CLIP1-201ENST00000302528 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.34□□□□□ -0.59
CLIP1-201ENST00000302528 N4BP1O75113 896 aaKnown RBP11.33□□□□□ -0.6
CLIP1-201ENST00000302528 LLPHQ9BRT6 129 aaKnown RBP11.33□□□□□ -0.6
CLIP1-201ENST00000302528 FIS1Q9Y3D6 152 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 ACEP12821 1306 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 KDM3AQ9Y4C1 1321 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 BUB1O43683 1085 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 TMEM191BP0C7N4 346 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 CHMLP26374 656 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 NUDCD3Q8IVD9 361 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 STAMQ92783 540 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 SPATA17Q96L03 361 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 KDRP35968 1356 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 PASKQ96RG2 1323 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 TESPA1A2RU30 521 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-201ENST00000302528 KRT10P13645 584 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 FBXW4P57775 412 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-201ENST00000302528 MYCBPQ99417 103 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-201ENST00000302528 SAMD9Q5K651 1589 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 NUP160Q12769 1436 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 GNPATO15228 680 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 RNASELQ05823 741 aaKnown RBP11.33□□□□□ -0.6
CLIP1-201ENST00000302528 CERS3Q8IU89 383 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 LARGE2Q8N3Y3 721 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 CCDC51Q96ER9 411 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 NCOA5Q9HCD5 579 aaKnown RBP11.33□□□□□ -0.6
CLIP1-201ENST00000302528 ZC3H12BQ5HYM0 836 aaKnown RBP11.33□□□□□ -0.6
CLIP1-201ENST00000302528 GPBP1Q86WP2 473 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 RFX6Q8HWS3 928 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 TRIM42Q8IWZ5 723 aa11.33□□□□□ -0.6
CLIP1-201ENST00000302528 MRPL50Q8N5N7 158 aaKnown RBP11.33□□□□□ -0.6
CLIP1-201ENST00000302528 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.33□□□□□ -0.6
CLIP1-201ENST00000302528 RSRC2Q7L4I2 434 aaKnown RBP11.32□□□□□ -0.6
CLIP1-201ENST00000302528 PIP4K2CQ8TBX8 421 aa11.32□□□□□ -0.6
CLIP1-201ENST00000302528 AATFQ9NY61 560 aaKnown RBP eCLIP11.32□□□□□ -0.6
CLIP1-201ENST00000302528 PACSIN2Q9UNF0 486 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-201ENST00000302528 ASXL1Q8IXJ9 1541 aa11.32□□□□□ -0.6
CLIP1-201ENST00000302528 RPSAP08865 295 aaKnown RBP11.32□□□□□ -0.6
CLIP1-201ENST00000302528 PTPREP23469 700 aa11.32□□□□□ -0.6
CLIP1-201ENST00000302528 OTUD7BQ6GQQ9 843 aa11.32□□□□□ -0.6
CLIP1-201ENST00000302528 REXO1Q8N1G1 1221 aaKnown RBP11.32□□□□□ -0.6
CLIP1-201ENST00000302528 C17orf53Q8N3J3 647 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-201ENST00000302528 PAGR1Q9BTK6 254 aa11.32□□□□□ -0.6
CLIP1-201ENST00000302528 NBPF3Q9H094 633 aa11.32□□□□□ -0.6
CLIP1-201ENST00000302528 NEUROG2Q9H2A3 272 aa11.32□□□□□ -0.6
CLIP1-201ENST00000302528 TPCN1Q9ULQ1 816 aa11.32□□□□□ -0.6
CLIP1-201ENST00000302528 K7ENM7 598 aa11.32□□□□□ -0.6
CLIP1-201ENST00000302528 IFNA8P32881 189 aa11.32□□□□□ -0.6
CLIP1-201ENST00000302528 LONP1P36776 959 aaKnown RBP11.32□□□□□ -0.6
CLIP1-201ENST00000302528 TCP10Q12799 353 aa11.32□□□□□ -0.6
CLIP1-201ENST00000302528 ARHGEF16Q5VV41 709 aa11.32□□□□□ -0.6
CLIP1-201ENST00000302528 MYOCDQ8IZQ8 938 aa11.32□□□□□ -0.6
CLIP1-201ENST00000302528 KIF21AQ7Z4S6 1674 aa11.32□□□□□ -0.6
CLIP1-201ENST00000302528 FAM135AQ9P2D6 1515 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms