RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 GJA10Q969M2 543 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 NUP98P52948 1817 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 ZPR1O75312 459 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 HIBADHP31937 336 aaKnown RBP10.25□□□□□ -0.77
MSH4-201ENST00000263187 CXCR5P32302 372 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 TECP42680 631 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 EIF6P56537 245 aaKnown RBP10.25□□□□□ -0.77
MSH4-201ENST00000263187 RAD51AP2Q09MP3 1159 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 NAALADL2Q58DX5 795 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 ELOA2Q8IYF1 753 aaPredicted RBP10.25□□□□□ -0.77
MSH4-201ENST00000263187 C10orf67Q8IYJ2 551 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 CSGALNACT2Q8N6G5 542 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 TRIM34Q9BYJ4 488 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 JADE2Q9NQC1 790 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 ANAPC4Q9UJX5 808 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 TTF2Q9UNY4 1162 aaKnown RBP10.25□□□□□ -0.77
MSH4-201ENST00000263187 EP400Q96L91 3159 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 CCNT1O60563 726 aaKnown RBP10.25□□□□□ -0.77
MSH4-201ENST00000263187 CASP8Q14790 479 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 SLC35G1Q2M3R5 365 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 PARP10Q53GL7 1025 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 DYMQ7RTS9 669 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 SH3RF3Q8TEJ3 882 aaPredicted RBP10.25□□□□□ -0.77
MSH4-201ENST00000263187 NAA15Q9BXJ9 866 aaKnown RBP10.25□□□□□ -0.77
MSH4-201ENST00000263187 UBA5Q9GZZ9 404 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 DISC1Q9NRI5 854 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 MAGEC2Q9UBF1 373 aaPredicted RBP10.25□□□□□ -0.77
MSH4-201ENST00000263187 LIMA1Q9UHB6 759 aaKnown RBP10.25□□□□□ -0.77
MSH4-201ENST00000263187 TSPY3P0CV98 308 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 TSPY8P0CW00 308 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 MTIF2P46199 727 aaKnown RBP10.24□□□□□ -0.77
MSH4-201ENST00000263187 ASIC1P78348 528 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 STK4Q13043 487 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 GPS2Q13227 327 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 HDXQ7Z353 690 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 MB21D1Q8N884 522 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 BBXQ8WY36 941 aaPredicted RBP10.24□□□□□ -0.77
MSH4-201ENST00000263187 BRIP1Q9BX63 1249 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 POLD4Q9HCU8 107 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 SLC39A2Q9NP94 309 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 FAM207AQ9NSI2 230 aaPredicted RBP10.24□□□□□ -0.77
MSH4-201ENST00000263187 EHD2Q9NZN4 543 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 ANKIB1Q9P2G1 1089 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 BRWD3Q6RI45 1802 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 CYTH3O43739 400 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 CALM1P0DP23 149 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 CALM2P0DP24 149 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 CALM3P0DP25 149 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 PLCG1P19174 1290 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 HERVK_113P62684 666 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 PDE4DQ08499 809 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 TBC1D8BQ0IIM8 1120 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 WDR59Q6PJI9 974 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 USP17L2Q6R6M4 530 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 OR8K1Q8NGG5 319 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 KANSL2Q9H9L4 492 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 UTRNP46939 3433 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 DDX60Q8IY21 1712 aaKnown RBP10.24□□□□□ -0.77
MSH4-201ENST00000263187 RAD21O60216 631 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 DDAH1O94760 285 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 RPS8P62241 208 aaKnown RBP10.24□□□□□ -0.77
MSH4-201ENST00000263187 BRD3Q15059 726 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 TXNRD1Q16881 649 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 BIN2Q9UBW5 565 aaPredicted RBP10.24□□□□□ -0.77
MSH4-201ENST00000263187 RGS17Q9UGC6 210 aaPredicted RBP10.24□□□□□ -0.77
MSH4-201ENST00000263187 PCDHA6Q9UN73 950 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 PCDHA8Q9Y5H6 950 aa10.24□□□□□ -0.77
MSH4-201ENST00000263187 MYH6P13533 1939 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 CHD4Q14839 1912 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 TXKP42681 527 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 C2orf54Q08AI8 447 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 UBE4AQ14139 1066 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 ANKRD40Q6AI12 368 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 NBPF5PQ86XG9 351 aaPredicted RBP10.23□□□□□ -0.77
MSH4-201ENST00000263187 CLEC10AQ8IUN9 316 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 ADSSL1Q8N142 457 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 CCDC155Q8N6L0 562 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 C4orf32Q8N8J7 132 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 TUBGCP2Q9BSJ2 902 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 UBXN6Q9BZV1 441 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 BSDC1Q9NW68 430 aaPredicted RBP10.23□□□□□ -0.77
MSH4-201ENST00000263187 TMEM260Q9NX78 707 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 L1RE1Q9UN81 338 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 MYH3P11055 1940 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 ERLIN1O75477 346 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 BMP15O95972 392 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 IDEP14735 1019 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 NAPAP54920 295 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 LRRC41Q15345 812 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 EZH2Q15910 746 aaKnown RBP10.23□□□□□ -0.77
MSH4-201ENST00000263187 HSP90B2PQ58FF3 399 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 TAF3Q5VWG9 929 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 TTC19Q6DKK2 380 aaPredicted RBP10.23□□□□□ -0.77
MSH4-201ENST00000263187 TXLNBQ8N3L3 684 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 LINC00116Q8NCU8 138 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 AK7Q96M32 723 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 PCDHA4Q9UN74 947 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.23□□□□□ -0.77
MSH4-201ENST00000263187 ZNF804BA4D1E1 1349 aa10.23□□□□□ -0.77
MSH4-201ENST00000263187 MYH13Q9UKX3 1938 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms