RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 CHST13Q8NET6 341 aa26.96■■□□□ 1.91
LSM4-201ENST00000252816 PAWRQ96IZ0 340 aaKnown RBP26.96■■□□□ 1.91
LSM4-201ENST00000252816 RBM8AQ9Y5S9 174 aaKnown RBP26.96■■□□□ 1.91
LSM4-201ENST00000252816 NEFLP07196 543 aa26.95■■□□□ 1.9
LSM4-201ENST00000252816 CNGA1P29973 690 aa26.95■■□□□ 1.9
LSM4-201ENST00000252816 ANKLE1Q8NAG6 615 aa26.95■■□□□ 1.9
LSM4-201ENST00000252816 PNMA1Q8ND90 353 aa26.95■■□□□ 1.9
LSM4-201ENST00000252816 LSG1Q9H089 658 aaKnown RBP26.95■■□□□ 1.9
LSM4-201ENST00000252816 RANBP17Q9H2T7 1088 aaKnown RBP26.95■■□□□ 1.9
LSM4-201ENST00000252816 FBXO40Q9UH90 709 aa26.95■■□□□ 1.9
LSM4-201ENST00000252816 TAL1P17542 331 aaPredicted RBP26.94■■□□□ 1.9
LSM4-201ENST00000252816 STOX1Q6ZVD7 989 aa26.94■■□□□ 1.9
LSM4-201ENST00000252816 DDX11Q96FC9 970 aa26.94■■□□□ 1.9
LSM4-201ENST00000252816 UBAC1Q9BSL1 405 aa26.94■■□□□ 1.9
LSM4-201ENST00000252816 KAT14Q9H8E8 782 aa26.94■■□□□ 1.9
LSM4-201ENST00000252816 RNF146Q9NTX7 359 aa26.94■■□□□ 1.9
LSM4-201ENST00000252816 DDX20Q9UHI6 824 aaKnown RBP26.94■■□□□ 1.9
LSM4-201ENST00000252816 ANKRD35Q8N283 1001 aa26.93■■□□□ 1.9
LSM4-201ENST00000252816 TINF2Q9BSI4 451 aa26.93■■□□□ 1.9
LSM4-201ENST00000252816 PLXNA1Q9UIW2 1896 aa26.93■■□□□ 1.9
LSM4-201ENST00000252816 E7EWF7 191 aa26.92■■□□□ 1.9
LSM4-201ENST00000252816 GOLGA8HP0CJ92 632 aa26.92■■□□□ 1.9
LSM4-201ENST00000252816 ALAS1P13196 640 aa26.92■■□□□ 1.9
LSM4-201ENST00000252816 TRDNQ13061 729 aa26.92■■□□□ 1.9
LSM4-201ENST00000252816 SEC23AQ15436 765 aa26.92■■□□□ 1.9
LSM4-201ENST00000252816 KIAA1211Q6ZU35 1233 aa26.92■■□□□ 1.9
LSM4-201ENST00000252816 TRERF1Q96PN7 1200 aa26.92■■□□□ 1.9
LSM4-201ENST00000252816 ACAD9Q9H845 621 aa26.92■■□□□ 1.9
LSM4-201ENST00000252816 ICAM1P05362 532 aa26.91■■□□□ 1.9
LSM4-201ENST00000252816 TKFCQ3LXA3 575 aa26.91■■□□□ 1.9
LSM4-201ENST00000252816 NECAB2Q7Z6G3 386 aa26.91■■□□□ 1.9
LSM4-201ENST00000252816 FGD4Q96M96 766 aa26.91■■□□□ 1.9
LSM4-201ENST00000252816 CPVLQ9H3G5 476 aa26.91■■□□□ 1.9
LSM4-201ENST00000252816 CCPG1Q9ULG6 757 aa26.91■■□□□ 1.9
LSM4-201ENST00000252816 MUM1L1Q5H9M0 696 aa26.9■■□□□ 1.9
LSM4-201ENST00000252816 GPATCH4Q5T3I0 446 aaKnown RBP26.9■■□□□ 1.9
LSM4-201ENST00000252816 HTATIP2Q9BUP3 242 aa26.9■■□□□ 1.9
LSM4-201ENST00000252816 A1CFQ9NQ94 594 aaKnown RBP26.9■■□□□ 1.9
LSM4-201ENST00000252816 SEPT4O43236 478 aa26.89■■□□□ 1.9
LSM4-201ENST00000252816 MSCO60682 206 aa26.89■■□□□ 1.9
LSM4-201ENST00000252816 IFIT1BQ5T764 474 aaKnown RBP26.89■■□□□ 1.9
LSM4-201ENST00000252816 ANO1Q5XXA6 986 aa26.89■■□□□ 1.9
LSM4-201ENST00000252816 DPF3Q92784 378 aa26.89■■□□□ 1.9
LSM4-201ENST00000252816 UBA5Q9GZZ9 404 aa26.89■■□□□ 1.9
LSM4-201ENST00000252816 SMCHD1A6NHR9 2005 aa26.89■■□□□ 1.89
LSM4-201ENST00000252816 FRMPD3Q5JV73 1810 aa26.88■■□□□ 1.89
LSM4-201ENST00000252816 MAMDC4Q6UXC1 1216 aa26.88■■□□□ 1.89
LSM4-201ENST00000252816 MSL3Q8N5Y2 521 aaKnown RBP26.88■■□□□ 1.89
LSM4-201ENST00000252816 NCOA7Q8NI08 942 aa26.88■■□□□ 1.89
LSM4-201ENST00000252816 ANO2Q9NQ90 1003 aa26.88■■□□□ 1.89
LSM4-201ENST00000252816 NRBP1Q9UHY1 535 aa26.88■■□□□ 1.89
LSM4-201ENST00000252816 SNAI1O95863 264 aaPredicted RBP26.87■■□□□ 1.89
LSM4-201ENST00000252816 ZNF865P0CJ78 1059 aaPredicted RBP26.87■■□□□ 1.89
LSM4-201ENST00000252816 CNTN2Q02246 1040 aa26.87■■□□□ 1.89
LSM4-201ENST00000252816 CHST3Q7LGC8 479 aa26.87■■□□□ 1.89
LSM4-201ENST00000252816 ZNF467Q7Z7K2 595 aaPredicted RBP26.87■■□□□ 1.89
LSM4-201ENST00000252816 RALYLQ86SE5 291 aaKnown RBP26.87■■□□□ 1.89
LSM4-201ENST00000252816 FAM133AQ8N9E0 248 aa26.87■■□□□ 1.89
LSM4-201ENST00000252816 SENP2Q9HC62 589 aa26.87■■□□□ 1.89
LSM4-201ENST00000252816 SYNGAP1Q96PV0 1343 aa26.87■■□□□ 1.89
LSM4-201ENST00000252816 CEP290O15078 2479 aa26.87■■□□□ 1.89
LSM4-201ENST00000252816 COL6A1P12109 1028 aa26.86■■□□□ 1.89
LSM4-201ENST00000252816 ANTXR2P58335 489 aa26.86■■□□□ 1.89
LSM4-201ENST00000252816 ASPRV1Q53RT3 343 aa26.86■■□□□ 1.89
LSM4-201ENST00000252816 MB21D2Q8IYB1 491 aaPredicted RBP26.86■■□□□ 1.89
LSM4-201ENST00000252816 C11orf49Q9H6J7 331 aa26.86■■□□□ 1.89
LSM4-201ENST00000252816 PFASO15067 1338 aa26.86■■□□□ 1.89
LSM4-201ENST00000252816 POTEB2H3BUK9 544 aa26.85■■□□□ 1.89
LSM4-201ENST00000252816 IFIT3O14879 490 aaKnown RBP26.85■■□□□ 1.89
LSM4-201ENST00000252816 SLC27A2O14975 620 aa26.85■■□□□ 1.89
LSM4-201ENST00000252816 CDC45O75419 566 aa26.85■■□□□ 1.89
LSM4-201ENST00000252816 PARP1P09874 1014 aaKnown RBP26.85■■□□□ 1.89
LSM4-201ENST00000252816 NECTIN1Q15223 517 aa26.85■■□□□ 1.89
LSM4-201ENST00000252816 SOWAHBA6NEL2 793 aa26.84■■□□□ 1.89
LSM4-201ENST00000252816 H0YGN5 161 aa26.84■■□□□ 1.89
LSM4-201ENST00000252816 COL9A3Q14050 684 aaPredicted RBP26.84■■□□□ 1.89
LSM4-201ENST00000252816 CREB3L3Q68CJ9 461 aa26.84■■□□□ 1.89
LSM4-201ENST00000252816 CYP39A1Q9NYL5 469 aa26.84■■□□□ 1.89
LSM4-201ENST00000252816 CNPY2Q9Y2B0 182 aa26.84■■□□□ 1.89
LSM4-201ENST00000252816 NFIBO00712 420 aa26.83■■□□□ 1.89
LSM4-201ENST00000252816 NSMFQ6X4W1 530 aa26.83■■□□□ 1.89
LSM4-201ENST00000252816 ADGRF4Q8IZF3 695 aa26.83■■□□□ 1.89
LSM4-201ENST00000252816 STAG2Q8N3U4 1231 aa26.83■■□□□ 1.89
LSM4-201ENST00000252816 CLEC4DQ8WXI8 215 aa26.83■■□□□ 1.89
LSM4-201ENST00000252816 CDKN2AIPQ9NXV6 580 aaPredicted RBP26.83■■□□□ 1.89
LSM4-201ENST00000252816 ASTN1O14525 1302 aa26.83■■□□□ 1.89
LSM4-201ENST00000252816 ARMCX2Q7L311 632 aa26.82■■□□□ 1.88
LSM4-201ENST00000252816 IGDCC4Q8TDY8 1250 aa26.82■■□□□ 1.88
LSM4-201ENST00000252816 PURBQ96QR8 312 aaKnown RBP26.82■■□□□ 1.88
LSM4-201ENST00000252816 WDR19Q8NEZ3 1342 aa26.82■■□□□ 1.88
LSM4-201ENST00000252816 ALPK3Q96L96 1907 aa26.81■■□□□ 1.88
LSM4-201ENST00000252816 WTAPQ15007 396 aa26.81■■□□□ 1.88
LSM4-201ENST00000252816 CDC37Q16543 378 aaPredicted RBP26.81■■□□□ 1.88
LSM4-201ENST00000252816 TMEM67Q5HYA8 995 aa26.81■■□□□ 1.88
LSM4-201ENST00000252816 GJC2Q5T442 439 aaPredicted RBP26.81■■□□□ 1.88
LSM4-201ENST00000252816 CCDC144CPQ8IYA2 1237 aa26.81■■□□□ 1.88
LSM4-201ENST00000252816 LENG1Q96BZ8 264 aaPredicted RBP26.81■■□□□ 1.88
LSM4-201ENST00000252816 MAD2L2Q9UI95 211 aa26.81■■□□□ 1.88
LSM4-201ENST00000252816 PNMA2Q9UL42 364 aa26.81■■□□□ 1.88
LSM4-201ENST00000252816 DDX49Q9Y6V7 483 aaKnown RBP26.81■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms