RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 SELENOOQ9BVL4 669 aa13.9□□□□□ -0.18
NUP88-201ENST00000225696 RABEP2Q9H5N1 569 aa13.9□□□□□ -0.18
NUP88-201ENST00000225696 NHEJ1Q9H9Q4 299 aaPredicted RBP13.9□□□□□ -0.18
NUP88-201ENST00000225696 DISC1Q9NRI5 854 aa13.9□□□□□ -0.18
NUP88-201ENST00000225696 SMARCAL1Q9NZC9 954 aa13.9□□□□□ -0.18
NUP88-201ENST00000225696 PDS5AQ29RF7 1337 aaKnown RBP13.9□□□□□ -0.18
NUP88-201ENST00000225696 STIM1Q13586 685 aa13.9□□□□□ -0.18
NUP88-201ENST00000225696 MEA1Q16626 185 aa13.9□□□□□ -0.18
NUP88-201ENST00000225696 PFKFB3Q16875 520 aaPredicted RBP13.9□□□□□ -0.18
NUP88-201ENST00000225696 TTI2Q6NXR4 508 aa13.9□□□□□ -0.18
NUP88-201ENST00000225696 CCNI2Q6ZMN8 369 aaPredicted RBP13.9□□□□□ -0.18
NUP88-201ENST00000225696 KIAA1328Q86T90 577 aa13.9□□□□□ -0.18
NUP88-201ENST00000225696 CERS3Q8IU89 383 aa13.9□□□□□ -0.18
NUP88-201ENST00000225696 AFAP1L1Q8TED9 768 aa13.9□□□□□ -0.18
NUP88-201ENST00000225696 TRIM47Q96LD4 638 aa13.9□□□□□ -0.18
NUP88-201ENST00000225696 VIPAS39Q9H9C1 493 aa13.9□□□□□ -0.18
NUP88-201ENST00000225696 FGRP09769 529 aa13.89□□□□□ -0.19
NUP88-201ENST00000225696 C3orf67Q6ZVT6 689 aa13.89□□□□□ -0.19
NUP88-201ENST00000225696 STAG2Q8N3U4 1231 aa13.89□□□□□ -0.19
NUP88-201ENST00000225696 HPS3Q969F9 1004 aa13.89□□□□□ -0.19
NUP88-201ENST00000225696 RRP36Q96EU6 259 aaKnown RBP13.89□□□□□ -0.19
NUP88-201ENST00000225696 ITGB4P16144 1822 aa13.89□□□□□ -0.19
NUP88-201ENST00000225696 CACNA1SQ13698 1873 aa13.89□□□□□ -0.19
NUP88-201ENST00000225696 A0A1W2PQC6 194 aa13.89□□□□□ -0.19
NUP88-201ENST00000225696 TUBBP07437 444 aa13.89□□□□□ -0.19
NUP88-201ENST00000225696 SRGNP10124 158 aa13.89□□□□□ -0.19
NUP88-201ENST00000225696 IGHMBP2P38935 993 aaKnown RBP13.89□□□□□ -0.19
NUP88-201ENST00000225696 SLC35G1Q2M3R5 365 aa13.89□□□□□ -0.19
NUP88-201ENST00000225696 RCSD1Q6JBY9 416 aa13.89□□□□□ -0.19
NUP88-201ENST00000225696 CTCFLQ8NI51 663 aaPredicted RBP13.89□□□□□ -0.19
NUP88-201ENST00000225696 DRC1Q96MC2 740 aa13.89□□□□□ -0.19
NUP88-201ENST00000225696 TUBGCP2Q9BSJ2 902 aa13.89□□□□□ -0.19
NUP88-201ENST00000225696 JADE2Q9NQC1 790 aa13.89□□□□□ -0.19
NUP88-201ENST00000225696 RMND1Q9NWS8 449 aa13.89□□□□□ -0.19
NUP88-201ENST00000225696 EHD2Q9NZN4 543 aa13.89□□□□□ -0.19
NUP88-201ENST00000225696 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.89□□□□□ -0.19
NUP88-201ENST00000225696 BCL9O00512 1426 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 DDAH1O94760 285 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 IDEP14735 1019 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 TRIM21P19474 475 aaKnown RBP13.88□□□□□ -0.19
NUP88-201ENST00000225696 KLRK1P26718 216 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 LONP1P36776 959 aaKnown RBP13.88□□□□□ -0.19
NUP88-201ENST00000225696 IL6STP40189 918 aaPredicted RBP13.88□□□□□ -0.19
NUP88-201ENST00000225696 ANKRD40Q6AI12 368 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 PSMB7Q99436 277 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 KAT14Q9H8E8 782 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 LRWD1Q9UFC0 647 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 DMGDHQ9UI17 866 aaKnown RBP13.88□□□□□ -0.19
NUP88-201ENST00000225696 CAPN6Q9Y6Q1 641 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 ZNF804BA4D1E1 1349 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 TAF1P21675 1872 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 EPHB6O15197 1021 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 CALM1P0DP23 149 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 CALM2P0DP24 149 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 CALM3P0DP25 149 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 FCER1AP12319 257 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 EEF1GP26641 437 aaKnown RBP13.88□□□□□ -0.19
NUP88-201ENST00000225696 MAGEA9P43362 315 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 TRAPPC10P48553 1259 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 EIF5P55010 431 aaKnown RBP13.88□□□□□ -0.19
NUP88-201ENST00000225696 CORO7P57737 925 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 SLC7A5Q01650 507 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 MIIPQ5JXC2 388 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 FKBP15Q5T1M5 1219 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 CREG2Q8IUH2 290 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 CSGALNACT2Q8N6G5 542 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 GIMAP8Q8ND71 665 aaPredicted RBP13.88□□□□□ -0.19
NUP88-201ENST00000225696 RASSF8Q8NHQ8 419 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 CAGE1Q8TC20 777 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 MLXIPQ9HAP2 919 aa13.88□□□□□ -0.19
NUP88-201ENST00000225696 MKRN1Q9UHC7 482 aaKnown RBP13.88□□□□□ -0.19
NUP88-201ENST00000225696 TARSL2A2RTX5 802 aaKnown RBP13.87□□□□□ -0.19
NUP88-201ENST00000225696 KRT86O43790 486 aa13.87□□□□□ -0.19
NUP88-201ENST00000225696 PPFIA4O75335 1185 aa13.87□□□□□ -0.19
NUP88-201ENST00000225696 ERCC3P19447 782 aa13.87□□□□□ -0.19
NUP88-201ENST00000225696 CXCR5P32302 372 aa13.87□□□□□ -0.19
NUP88-201ENST00000225696 TBC1D8BQ0IIM8 1120 aa13.87□□□□□ -0.19
NUP88-201ENST00000225696 STK4Q13043 487 aa13.87□□□□□ -0.19
NUP88-201ENST00000225696 INF2Q27J81 1249 aa13.87□□□□□ -0.19
NUP88-201ENST00000225696 CCDC152Q4G0S7 254 aa13.87□□□□□ -0.19
NUP88-201ENST00000225696 ARL6IP4Q66PJ3 421 aaKnown RBP13.87□□□□□ -0.19
NUP88-201ENST00000225696 TTC19Q6DKK2 380 aaPredicted RBP13.87□□□□□ -0.19
NUP88-201ENST00000225696 BLIDQ8IZY5 108 aa13.87□□□□□ -0.19
NUP88-201ENST00000225696 PURBQ96QR8 312 aaKnown RBP13.87□□□□□ -0.19
NUP88-201ENST00000225696 LRRC1Q9BTT6 524 aa13.87□□□□□ -0.19
NUP88-201ENST00000225696 BRIP1Q9BX63 1249 aa13.87□□□□□ -0.19
NUP88-201ENST00000225696 ACBD3Q9H3P7 528 aa13.87□□□□□ -0.19
NUP88-201ENST00000225696 THAP9Q9H5L6 903 aa13.87□□□□□ -0.19
NUP88-201ENST00000225696 EXOC1Q9NV70 894 aa13.87□□□□□ -0.19
NUP88-201ENST00000225696 RHOBTB3O94955 611 aa13.86□□□□□ -0.19
NUP88-201ENST00000225696 MATR3P43243 847 aaKnown RBP eCLIP13.86□□□□□ -0.19
NUP88-201ENST00000225696 DNM2P50570 870 aa13.86□□□□□ -0.19
NUP88-201ENST00000225696 KRT83P78385 493 aa13.86□□□□□ -0.19
NUP88-201ENST00000225696 TSR1Q2NL82 804 aaKnown RBP13.86□□□□□ -0.19
NUP88-201ENST00000225696 INTS5Q6P9B9 1019 aaKnown RBP13.86□□□□□ -0.19
NUP88-201ENST00000225696 SMARCC1Q92922 1105 aaPredicted RBP13.86□□□□□ -0.19
NUP88-201ENST00000225696 KBTBD4Q9NVX7 518 aa13.86□□□□□ -0.19
NUP88-201ENST00000225696 MTMR7Q9Y216 660 aa13.86□□□□□ -0.19
NUP88-201ENST00000225696 JAG2Q9Y219 1238 aa13.86□□□□□ -0.19
NUP88-201ENST00000225696 M0R2N6 131 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms