RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	NAM7	P30771	971 aa	Known RBP	4.59	□□□□□ -1.67
CDC48	YDL126C	MTC7	P32633	139 aa		4.59	□□□□□ -1.67
CDC48	YDL126C	YME1	P32795	747 aa		4.59	□□□□□ -1.67
CDC48	YDL126C	GYP6	P32806	458 aa		4.59	□□□□□ -1.67
CDC48	YDL126C	SUR1	P33300	382 aa		4.59	□□□□□ -1.67
CDC48	YDL126C	LAS1	P36146	502 aa	Predicted RBP	4.59	□□□□□ -1.67
CDC48	YDL126C	FLR1	P38124	548 aa		4.59	□□□□□ -1.67
CDC48	YDL126C	YEL057C	P39983	233 aa		4.59	□□□□□ -1.67
CDC48	YDL126C	SER3	P40054	469 aa		4.59	□□□□□ -1.67
CDC48	YDL126C	YFL052W	P43551	465 aa		4.59	□□□□□ -1.67
CDC48	YDL126C	MFM1	Q02783	413 aa		4.59	□□□□□ -1.67
CDC48	YDL126C	SNO4	Q04902	237 aa		4.59	□□□□□ -1.67
CDC48	YDL126C	DON1	Q05610	365 aa		4.59	□□□□□ -1.67
CDC48	YDL126C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	not detected
CDC48	YDL126C	MLH2	Q07980	695 aa		4.59	□□□□□ -1.67
CDC48	YDL126C	HSP33	Q08914	237 aa	Known RBP	4.59	□□□□□ -1.67
CDC48	YDL126C	HSP32	Q08992	237 aa		4.59	□□□□□ -1.67
CDC48	YDL126C	YOR289W	Q12012	251 aa	Predicted RBP	4.59	□□□□□ -1.67
CDC48	YDL126C	HEM1	P09950	548 aa	Predicted RBP	4.58	□□□□□ -1.68
CDC48	YDL126C	LAT1	P12695	482 aa	Known RBP	4.58	□□□□□ -1.68
CDC48	YDL126C	PHO81	P17442	1178 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	RPO26	P20435	155 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	SEC65	P29478	273 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	VPH2	P32341	215 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	NIP1	P32497	812 aa	Known RBP	4.58	□□□□□ -1.68
CDC48	YDL126C	HEL1	P36113	551 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	SLX1	P38324	304 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	RFC3	P38629	340 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	YJR054W	P47114	497 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	YGR117C	P53270	476 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	CIK1	Q01649	594 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	OAZ1	Q02803	292 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	NGL3	Q03210	505 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	DML1	Q03652	475 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	YAP6	Q03935	383 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	SUE1	Q06524	206 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	TMA16	Q08687	178 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	AFT2	Q08957	416 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	ICL2	Q12031	575 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	TEF1	P02994	458 aa	Known RBP	4.58	□□□□□ -1.68
CDC48	YDL126C	FUM1	P08417	488 aa	Known RBP	4.58	□□□□□ -1.68
CDC48	YDL126C	KRS1	P15180	591 aa	Known RBP	4.58	□□□□□ -1.68
CDC48	YDL126C	PRP4	P20053	465 aa	Known RBP	4.58	□□□□□ -1.68
CDC48	YDL126C	XRS2	P33301	854 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	GCS1	P35197	352 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	CCL1	P37366	393 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	SEC31	P38968	1273 aa	Known RBP	4.58	□□□□□ -1.68
CDC48	YDL126C	FCY21	P40039	528 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	EFM4	P40516	257 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	THI6	P41835	540 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	ASK10	P48361	1146 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	ARI1	P53111	347 aa	Known RBP	4.58	□□□□□ -1.68
CDC48	YDL126C	EFM5	P53200	248 aa	Known RBP	4.58	□□□□□ -1.68
CDC48	YDL126C	SOL4	P53315	255 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	SLU7	Q02775	382 aa	Known RBP	4.58	□□□□□ -1.68
CDC48	YDL126C	YMR018W	Q04364	514 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	DYN3	Q04949	312 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	RSF1	Q05043	376 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	ATG17	Q06410	417 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	MDM36	Q06820	579 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	STP4	Q07351	490 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	RSA1	Q08932	381 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	YOR022C	Q12204	715 aa		4.58	□□□□□ -1.68
CDC48	YDL126C	PDH1	Q12428	516 aa	Known RBP	4.58	□□□□□ -1.68
CDC48	YDL126C	DSF1	P0CX08	502 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	YNR073C	P0CX09	502 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	CKA2	P19454	339 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	OCA4	P25366	362 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	STE14	P32584	239 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	PGM1	P33401	570 aa	Known RBP	4.57	□□□□□ -1.68
CDC48	YDL126C	GAA1	P39012	614 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	YER137C	P40083	148 aa	Known RBP	4.57	□□□□□ -1.68
CDC48	YDL126C	INA22	P40576	216 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	LOC1	P43586	204 aa	Predicted RBP	4.57	□□□□□ -1.68
CDC48	YDL126C	MRX6	P48564	524 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	YKR005C	Q02203	525 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	RVB1	Q03940	463 aa	Known RBP	4.57	□□□□□ -1.68
CDC48	YDL126C	HMO1	Q03973	246 aa	Known RBP	4.57	□□□□□ -1.68
CDC48	YDL126C	YHM2	Q04013	314 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	GYL1	Q04322	720 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	HPF1	Q05164	967 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	NOP6	Q07623	225 aa	Known RBP	4.57	□□□□□ -1.68
CDC48	YDL126C	YLR031W	Q07978	186 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	GPN2	Q08726	347 aa	Predicted RBP	4.57	□□□□□ -1.68
CDC48	YDL126C	MSH5	Q12175	901 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	SVS1	Q12254	260 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	YLR278C	Q05854	1341 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	PGK1	P00560	416 aa	Known RBP	4.57	□□□□□ -1.68
CDC48	YDL126C	ARG80	P07249	177 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	GCD2	P12754	651 aa	Predicted RBP	4.57	□□□□□ -1.68
CDC48	YDL126C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected
CDC48	YDL126C	SPS22	P25380	463 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	CAP1	P28495	268 aa	Known RBP	4.57	□□□□□ -1.68
CDC48	YDL126C	SMI1	P32566	505 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	MAK5	P38112	773 aa	Predicted RBP	4.57	□□□□□ -1.68
CDC48	YDL126C	APM3	P38153	483 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	RCK2	P38623	610 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	CCT4	P39078	528 aa	Known RBP	4.57	□□□□□ -1.68
CDC48	YDL126C	NUP60	P39705	539 aa		4.57	□□□□□ -1.68
CDC48	YDL126C	TMN3	P40071	706 aa		4.57	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 57.7 ms