RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 ALPK3Q96L96 1907 aa21.32■■□□□ 1
CLN3-243ENST00000635973 B4E1Z4 1266 aa21.32■■□□□ 1
CLN3-243ENST00000635973 CNGA1P29973 690 aa21.32■■□□□ 1
CLN3-243ENST00000635973 NT5C2P49902 561 aa21.32■■□□□ 1
CLN3-243ENST00000635973 GRB14Q14449 540 aa21.32■■□□□ 1
CLN3-243ENST00000635973 RNF20Q5VTR2 975 aa21.32■■□□□ 1
CLN3-243ENST00000635973 RALYLQ86SE5 291 aaKnown RBP21.32■■□□□ 1
CLN3-243ENST00000635973 SIAH1Q8IUQ4 282 aa21.32■■□□□ 1
CLN3-243ENST00000635973 SLC5A4Q9NY91 659 aa21.32■■□□□ 1
CLN3-243ENST00000635973 RBM27Q9P2N5 1060 aaKnown RBP21.32■■□□□ 1
CLN3-243ENST00000635973 TRIOBPQ9H2D6 2365 aa21.32■■□□□ 1
CLN3-243ENST00000635973 NMT2O60551 498 aa21.31■■□□□ 1
CLN3-243ENST00000635973 KDM4AO75164 1064 aa21.31■■□□□ 1
CLN3-243ENST00000635973 KIAA1755Q5JYT7 1200 aa21.31■■□□□ 1
CLN3-243ENST00000635973 CREB3L3Q68CJ9 461 aa21.31■■□□□ 1
CLN3-243ENST00000635973 NCAPG2Q86XI2 1143 aa21.31■■□□□ 1
CLN3-243ENST00000635973 C7orf61Q8IZ16 206 aa21.31■■□□□ 1
CLN3-243ENST00000635973 LRRC47Q8N1G4 583 aaKnown RBP21.31■■□□□ 1
CLN3-243ENST00000635973 SHCBP1Q8NEM2 672 aa21.31■■□□□ 1
CLN3-243ENST00000635973 MROH8Q9H579 483 aa21.31■■□□□ 1
CLN3-243ENST00000635973 A0A0G2JMZ2 1700 aa21.31■■□□□ 1
CLN3-243ENST00000635973 COL11A1P12107 1806 aaPredicted RBP21.3■■□□□ 1
CLN3-243ENST00000635973 PARP14Q460N5 1801 aa21.3■■□□□ 1
CLN3-243ENST00000635973 SLC27A2O14975 620 aa21.3■■□□□ 1
CLN3-243ENST00000635973 HOXC6P09630 235 aa21.3■■□□□ 1
CLN3-243ENST00000635973 ERCC3P19447 782 aa21.3■■□□□ 1
CLN3-243ENST00000635973 IQCA1Q86XH1 822 aa21.3■■□□□ 1
CLN3-243ENST00000635973 ATG4CQ96DT6 458 aa21.3■■□□□ 1
CLN3-243ENST00000635973 E7EWF7 191 aa21.29■■□□□ 1
CLN3-243ENST00000635973 ADORA2AP29274 412 aa21.29■■□□□ 1
CLN3-243ENST00000635973 NCOA7Q8NI08 942 aa21.29■■□□□ 1
CLN3-243ENST00000635973 NPLOC4Q8TAT6 608 aa21.29■■□□□ 1
CLN3-243ENST00000635973 ZKSCAN3Q9BRR0 538 aa21.29■■□□□ 1
CLN3-243ENST00000635973 UBAC1Q9BSL1 405 aa21.29■■□□□ 1
CLN3-243ENST00000635973 IL17RBQ9NRM6 502 aa21.29■■□□□ 1
CLN3-243ENST00000635973 FLRT1Q9NZU1 646 aa21.29■■□□□ 1
CLN3-243ENST00000635973 ISY1Q9ULR0 285 aaKnown RBP21.29■■□□□ 1
CLN3-243ENST00000635973 ZNFX1Q9P2E3 1918 aaKnown RBP21.29■■□□□ 1
CLN3-243ENST00000635973 MYH4Q9Y623 1939 aa21.29■■□□□ 1
CLN3-243ENST00000635973 FRMPD3Q5JV73 1810 aa21.29■■□□□ 1
CLN3-243ENST00000635973 ZNF236Q9UL36 1845 aa21.28■■□□□ 1
CLN3-243ENST00000635973 MSCO60682 206 aa21.28■■□□□ 1
CLN3-243ENST00000635973 NECTIN1Q15223 517 aa21.28■■□□□ 1
CLN3-243ENST00000635973 CCDC178Q5BJE1 867 aa21.28■■□□□ 1
CLN3-243ENST00000635973 TCP11L1Q9NUJ3 509 aa21.28■■□□□ 1
CLN3-243ENST00000635973 TAF6LQ9Y6J9 622 aa21.28■■□□□ 1
CLN3-243ENST00000635973 SLC25A27O95847 323 aa21.27■■□□□ 1
CLN3-243ENST00000635973 FCER1AP12319 257 aa21.27■■□□□ 1
CLN3-243ENST00000635973 CYP2C19P33261 490 aa21.27■■□□□ 1
CLN3-243ENST00000635973 LHX8Q68G74 356 aa21.27■■□□□ 1
CLN3-243ENST00000635973 MKL1Q969V6 931 aa21.27■■□□□ 1
CLN3-243ENST00000635973 DDX20Q9UHI6 824 aaKnown RBP21.27■■□□□ 1
CLN3-243ENST00000635973 SYNPO2Q9UMS6 1093 aa21.27■■□□□ 1
CLN3-243ENST00000635973 RANBP2P49792 3224 aaKnown RBP21.27■■□□□ 1
CLN3-243ENST00000635973 F5H6K3 240 aa21.26■□□□□ 0.99
CLN3-243ENST00000635973 NDUFB10O96000 172 aa21.26■□□□□ 0.99
CLN3-243ENST00000635973 MNX1P50219 401 aaPredicted RBP21.26■□□□□ 0.99
CLN3-243ENST00000635973 KLRC3Q07444 240 aa21.26■□□□□ 0.99
CLN3-243ENST00000635973 FAM83BQ5T0W9 1011 aa21.26■□□□□ 0.99
CLN3-243ENST00000635973 STOX1Q6ZVD7 989 aa21.26■□□□□ 0.99
CLN3-243ENST00000635973 PRO3102Q9H379 93 aa21.26■□□□□ 0.99
CLN3-243ENST00000635973 ZSWIM5Q9P217 1185 aa21.26■□□□□ 0.99
CLN3-243ENST00000635973 MTMR7Q9Y216 660 aa21.26■□□□□ 0.99
CLN3-243ENST00000635973 SZT2Q5T011 3432 aa21.25■□□□□ 0.99
CLN3-243ENST00000635973 EIF5BO60841 1220 aaKnown RBP21.25■□□□□ 0.99
CLN3-243ENST00000635973 TOP1P11387 765 aaKnown RBP21.25■□□□□ 0.99
CLN3-243ENST00000635973 TMEM132BQ14DG7 1078 aa21.25■□□□□ 0.99
CLN3-243ENST00000635973 OLFML2BQ68BL8 750 aa21.25■□□□□ 0.99
CLN3-243ENST00000635973 ABRAQ8N0Z2 381 aa21.25■□□□□ 0.99
CLN3-243ENST00000635973 ZSCAN10Q96SZ4 725 aaPredicted RBP21.25■□□□□ 0.99
CLN3-243ENST00000635973 FBXO28Q9NVF7 368 aa21.25■□□□□ 0.99
CLN3-243ENST00000635973 ZMYND8Q9ULU4 1186 aaPredicted RBP21.25■□□□□ 0.99
CLN3-243ENST00000635973 CTDP1Q9Y5B0 961 aaPredicted RBP21.25■□□□□ 0.99
CLN3-243ENST00000635973 TNKSO95271 1327 aa21.25■□□□□ 0.99
CLN3-243ENST00000635973 ERICH2A1L162 156 aa21.24■□□□□ 0.99
CLN3-243ENST00000635973 SART3Q15020 963 aaKnown RBP21.24■□□□□ 0.99
CLN3-243ENST00000635973 SLFN13Q68D06 897 aa21.24■□□□□ 0.99
CLN3-243ENST00000635973 CYB5R4Q7L1T6 521 aa21.24■□□□□ 0.99
CLN3-243ENST00000635973 GMCL1P1Q8NEA9 526 aa21.24■□□□□ 0.99
CLN3-243ENST00000635973 CHMP4CQ96CF2 233 aa21.24■□□□□ 0.99
CLN3-243ENST00000635973 TTC14Q96N46 770 aa21.24■□□□□ 0.99
CLN3-243ENST00000635973 MMP19Q99542 508 aa21.24■□□□□ 0.99
CLN3-243ENST00000635973 TMEM47Q9BQJ4 181 aa21.24■□□□□ 0.99
CLN3-243ENST00000635973 PPP1R9AQ9ULJ8 1098 aa21.24■□□□□ 0.99
CLN3-243ENST00000635973 VWA5AO00534 786 aa21.23■□□□□ 0.99
CLN3-243ENST00000635973 MCCP23508 829 aa21.23■□□□□ 0.99
CLN3-243ENST00000635973 COPB2P35606 906 aa21.23■□□□□ 0.99
CLN3-243ENST00000635973 STAT3P40763 770 aa21.23■□□□□ 0.99
CLN3-243ENST00000635973 KCTD2Q14681 263 aa21.23■□□□□ 0.99
CLN3-243ENST00000635973 NUP88Q99567 741 aaPredicted RBP21.23■□□□□ 0.99
CLN3-243ENST00000635973 KAT14Q9H8E8 782 aa21.23■□□□□ 0.99
CLN3-243ENST00000635973 ADAMTS5Q9UNA0 930 aa21.23■□□□□ 0.99
CLN3-243ENST00000635973 PFASO15067 1338 aa21.23■□□□□ 0.99
CLN3-243ENST00000635973 PLXNA1Q9UIW2 1896 aa21.22■□□□□ 0.99
CLN3-243ENST00000635973 A0A1W2PPC1 479 aa21.22■□□□□ 0.99
CLN3-243ENST00000635973 IFIT3O14879 490 aaKnown RBP21.22■□□□□ 0.99
CLN3-243ENST00000635973 EPB41L2O43491 1005 aaKnown RBP21.22■□□□□ 0.99
CLN3-243ENST00000635973 COBLO75128 1261 aa21.22■□□□□ 0.99
CLN3-243ENST00000635973 SYN1P17600 705 aa21.22■□□□□ 0.99
CLN3-243ENST00000635973 SLC1A4P43007 532 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms