RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 HOMEZQ8IX15 550 aa15.48■□□□□ 0.07
CPSF1-212ENST00000616140 GINS2Q9Y248 185 aa15.48■□□□□ 0.07
CPSF1-212ENST00000616140 GAS7O60861 476 aa15.48■□□□□ 0.07
CPSF1-212ENST00000616140 DDAH1O94760 285 aa15.48■□□□□ 0.07
CPSF1-212ENST00000616140 CYP2J2P51589 502 aa15.48■□□□□ 0.07
CPSF1-212ENST00000616140 TRPC3Q13507 836 aa15.48■□□□□ 0.07
CPSF1-212ENST00000616140 RASGRP4Q8TDF6 673 aa15.48■□□□□ 0.07
CPSF1-212ENST00000616140 CDC23Q9UJX2 597 aa15.48■□□□□ 0.07
CPSF1-212ENST00000616140 PTCH1Q13635 1447 aa15.48■□□□□ 0.07
CPSF1-212ENST00000616140 LMTK3Q96Q04 1460 aa15.48■□□□□ 0.07
CPSF1-212ENST00000616140 GNA14O95837 355 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 CDC25AP30304 524 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 ADD2P35612 726 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 LONP1P36776 959 aaKnown RBP15.47■□□□□ 0.07
CPSF1-212ENST00000616140 STRN3Q13033 797 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 TUBGCP2Q9BSJ2 902 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.47■□□□□ 0.075e-7■■□□□ 13.3
CPSF1-212ENST00000616140 STK24Q9Y6E0 443 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 PRKAB2O43741 272 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 CD19P15391 556 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 POLR2FP61218 127 aaKnown RBP15.47■□□□□ 0.07
CPSF1-212ENST00000616140 POTEDQ86YR6 584 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 SLC35F6Q8N357 371 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 RABGGTAQ92696 567 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 AMFRQ9UKV5 643 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 KDM3AQ9Y4C1 1321 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 MKRN1Q9UHC7 482 aaKnown RBP15.47■□□□□ 0.07
CPSF1-212ENST00000616140 MLH3Q9UHC1 1453 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 LOC102724428A0A0B4J2F2 783 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 E7EVH7 732 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 ENC1O14682 589 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 IFNAR1P17181 557 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 SIK1P57059 783 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 TEKT1Q969V4 418 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 SEC31BQ9NQW1 1179 aa15.47■□□□□ 0.07
CPSF1-212ENST00000616140 ERBB3P21860 1342 aa15.46■□□□□ 0.07
CPSF1-212ENST00000616140 APBB1IPQ7Z5R6 666 aaPredicted RBP15.46■□□□□ 0.07
CPSF1-212ENST00000616140 VSIG1Q86XK7 387 aa15.46■□□□□ 0.07
CPSF1-212ENST00000616140 LARGE2Q8N3Y3 721 aa15.46■□□□□ 0.07
CPSF1-212ENST00000616140 PPANQ9NQ55 473 aaKnown RBP15.46■□□□□ 0.07
CPSF1-212ENST00000616140 ZSWIM5Q9P217 1185 aa15.46■□□□□ 0.07
CPSF1-212ENST00000616140 DKC1O60832 514 aaKnown RBP eCLIP15.46■□□□□ 0.07
CPSF1-212ENST00000616140 CDC25BP30305 580 aa15.46■□□□□ 0.07
CPSF1-212ENST00000616140 LONRF2Q1L5Z9 754 aa15.46■□□□□ 0.07
CPSF1-212ENST00000616140 CEP85LQ5SZL2 805 aa15.46■□□□□ 0.07
CPSF1-212ENST00000616140 CTNNA1P35221 906 aaKnown RBP15.46■□□□□ 0.06
CPSF1-212ENST00000616140 GALNT17Q6IS24 598 aa15.46■□□□□ 0.06
CPSF1-212ENST00000616140 CROCCP2Q86T23 111 aa15.46■□□□□ 0.06
CPSF1-212ENST00000616140 FAM204AQ9H8W3 233 aa15.46■□□□□ 0.06
CPSF1-212ENST00000616140 SAMD9LQ8IVG5 1584 aa15.46■□□□□ 0.06
CPSF1-212ENST00000616140 CCDC160A6NGH7 325 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 SLFN14P0C7P3 912 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 ATP1A3P13637 1013 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 MTMR3Q13615 1198 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 CLUL1Q15846 466 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 TMEM87AQ8NBN3 555 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 KIFC2Q96AC6 838 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 GJA3Q9Y6H8 435 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 FMNL1O95466 1100 aaPredicted RBP15.45■□□□□ 0.06
CPSF1-212ENST00000616140 GAS8O95995 478 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 PCP11498 1178 aaKnown RBP15.45■□□□□ 0.06
CPSF1-212ENST00000616140 ARHGAP25P42331 645 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 ATP1A2P50993 1020 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 CYP4A11Q02928 519 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 NAA25Q14CX7 972 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 PPP1R21Q6ZMI0 780 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 SRGAP1Q7Z6B7 1085 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 GJB4Q9NTQ9 266 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 KRIT1O00522 736 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 H2AFZP0C0S5 128 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 ADAM9Q13443 819 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 H2AFVQ71UI9 128 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 TAOK1Q7L7X3 1001 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 PICK1Q9NRD5 415 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 BTDP43251 543 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 CNOT6LQ96LI5 555 aaKnown RBP15.45■□□□□ 0.06
CPSF1-212ENST00000616140 RAB17Q9H0T7 212 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 PDE11AQ9HCR9 933 aa15.45■□□□□ 0.06
CPSF1-212ENST00000616140 SAMSN1Q9NSI8 373 aaKnown RBP15.45■□□□□ 0.06
CPSF1-212ENST00000616140 PRDM15P57071 1507 aaPredicted RBP15.44■□□□□ 0.06
CPSF1-212ENST00000616140 KRT15P19012 456 aa15.44■□□□□ 0.06
CPSF1-212ENST00000616140 TRAPPC10P48553 1259 aa15.44■□□□□ 0.06
CPSF1-212ENST00000616140 SCNN1DP51172 638 aa15.44■□□□□ 0.06
CPSF1-212ENST00000616140 DYNLL1P63167 89 aaKnown RBP15.44■□□□□ 0.06
CPSF1-212ENST00000616140 GNGT1P63211 74 aa15.44■□□□□ 0.06
CPSF1-212ENST00000616140 KIAA0825Q8IV33 1275 aa15.44■□□□□ 0.06
CPSF1-212ENST00000616140 PPFIBP2Q8ND30 876 aa15.44■□□□□ 0.06
CPSF1-212ENST00000616140 BCAS4Q8TDM0 211 aa15.44■□□□□ 0.06
CPSF1-212ENST00000616140 GJA10Q969M2 543 aa15.44■□□□□ 0.06
CPSF1-212ENST00000616140 RSRC1Q96IZ7 334 aaKnown RBP15.44■□□□□ 0.06
CPSF1-212ENST00000616140 PANK4Q9NVE7 773 aa15.44■□□□□ 0.06
CPSF1-212ENST00000616140 IL6STP40189 918 aaPredicted RBP15.44■□□□□ 0.06
CPSF1-212ENST00000616140 CFAP157Q5JU67 520 aa15.44■□□□□ 0.06
CPSF1-212ENST00000616140 VTI1AQ96AJ9 217 aa15.44■□□□□ 0.06
CPSF1-212ENST00000616140 PABPN1LA6NDY0 278 aaKnown RBP15.44■□□□□ 0.06
CPSF1-212ENST00000616140 TNNI1P19237 187 aa15.44■□□□□ 0.06
CPSF1-212ENST00000616140 DENND2CQ68D51 928 aa15.44■□□□□ 0.06
CPSF1-212ENST00000616140 ADAT2Q7Z6V5 191 aaKnown RBP15.44■□□□□ 0.06
CPSF1-212ENST00000616140 FAM178BQ8IXR5 827 aa15.44■□□□□ 0.06
CPSF1-212ENST00000616140 ZNF804BA4D1E1 1349 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms