RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 EVI5LQ96CN4 794 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 TINF2Q9BSI4 451 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 TEX13BQ9BXU2 312 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 INCENPQ9NQS7 918 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 ZBTB47Q9UFB7 747 aaPredicted RBP9.07□□□□□ -0.96
CUX1-219ENST00000606749 FEM1BQ9UK73 627 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 PARP14Q460N5 1801 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 GREB1LQ9C091 1923 aaPredicted RBP9.07□□□□□ -0.96
CUX1-219ENST00000606749 COL11A1P12107 1806 aaPredicted RBP9.06□□□□□ -0.96
CUX1-219ENST00000606749 SMCHD1A6NHR9 2005 aa9.06□□□□□ -0.96
CUX1-219ENST00000606749 DNAJC25-GNG10A0A024R161 153 aa9.06□□□□□ -0.96
CUX1-219ENST00000606749 KBTBD13C9JR72 458 aa9.06□□□□□ -0.96
CUX1-219ENST00000606749 MYCNP04198 464 aaPredicted RBP9.06□□□□□ -0.96
CUX1-219ENST00000606749 ZNF865P0CJ78 1059 aaPredicted RBP9.06□□□□□ -0.96
CUX1-219ENST00000606749 ADCYAP1R1P41586 468 aa9.06□□□□□ -0.96
CUX1-219ENST00000606749 SLC4A3P48751 1232 aa9.06□□□□□ -0.96
CUX1-219ENST00000606749 PDE1AP54750 535 aa9.06□□□□□ -0.96
CUX1-219ENST00000606749 RTP1P59025 263 aa9.06□□□□□ -0.96
CUX1-219ENST00000606749 HDAC1Q13547 482 aaPredicted RBP9.06□□□□□ -0.96
CUX1-219ENST00000606749 SLFN13Q68D06 897 aa9.06□□□□□ -0.96
CUX1-219ENST00000606749 GPR153Q6NV75 609 aa9.06□□□□□ -0.96
CUX1-219ENST00000606749 LRRC47Q8N1G4 583 aaKnown RBP9.06□□□□□ -0.96
CUX1-219ENST00000606749 KIFC2Q96AC6 838 aa9.06□□□□□ -0.96
CUX1-219ENST00000606749 DDX11Q96FC9 970 aa9.06□□□□□ -0.96
CUX1-219ENST00000606749 SLC38A10Q9HBR0 1119 aa9.06□□□□□ -0.96
CUX1-219ENST00000606749 RAVER2Q9HCJ3 691 aaKnown RBP9.06□□□□□ -0.96
CUX1-219ENST00000606749 CTDP1Q9Y5B0 961 aaPredicted RBP9.06□□□□□ -0.96
CUX1-219ENST00000606749 FRMPD3Q5JV73 1810 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 PLIN4Q96Q06 1357 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 TMEM232C9JQI7 657 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 SNAI1O95863 264 aaPredicted RBP9.05□□□□□ -0.96
CUX1-219ENST00000606749 PGK1P00558 417 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 RARBP10826 455 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 BMP3P12645 472 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 OAZ1P54368 228 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 CTDSPL2Q05D32 466 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 SNX17Q15036 470 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 ALX1Q15699 326 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 VPS53Q5VIR6 699 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 MAMDC4Q6UXC1 1216 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.05□□□□□ -0.96
CUX1-219ENST00000606749 MSL3Q8N5Y2 521 aaKnown RBP9.05□□□□□ -0.96
CUX1-219ENST00000606749 CHURC1Q8WUH1 139 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 FERMT2Q96AC1 680 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 LBHD1Q9BQE6 289 aaPredicted RBP9.05□□□□□ -0.96
CUX1-219ENST00000606749 XPNPEP3Q9NQH7 507 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 IL17RBQ9NRM6 502 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 HELLSQ9NRZ9 838 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 ANAPC4Q9UJX5 808 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 CNPY2Q9Y2B0 182 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 ATP11BQ9Y2G3 1177 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.05□□□□□ -0.96
CUX1-219ENST00000606749 TACC3Q9Y6A5 838 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 LAMA3Q16787 3333 aa9.05□□□□□ -0.96
CUX1-219ENST00000606749 TSPY2A6NKD2 308 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 NMT2O60551 498 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 PLA2G6O60733 806 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 FGRP09769 529 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 FDX1P10109 184 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 AKR1A1P14550 325 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 MCCP23508 829 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 STAT2P52630 851 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 TRIM60Q495X7 471 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 MCMDC2Q4G0Z9 681 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 PPP4R3BQ5MIZ7 849 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 C1orf53Q5VUE5 145 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 RCSD1Q6JBY9 416 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 ZNF467Q7Z7K2 595 aaPredicted RBP9.04□□□□□ -0.96
CUX1-219ENST00000606749 RNF180Q86T96 592 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 TICAM2Q86XR7 235 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 CHST13Q8NET6 341 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 STAG1Q8WVM7 1258 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 GMCL1Q96IK5 515 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 FAM227BQ96M60 508 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 PRKAG2Q9UGJ0 569 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 FBXO40Q9UH90 709 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 PHF24Q9UPV7 400 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 SYNGAP1Q96PV0 1343 aa9.04□□□□□ -0.96
CUX1-219ENST00000606749 MYH4Q9Y623 1939 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 ORC4O43929 436 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 RANBP6O60518 1105 aaKnown RBP9.03□□□□□ -0.96
CUX1-219ENST00000606749 FGAP02671 866 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 SLC1A4P43007 532 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 NOVP48745 357 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 AAMPQ13685 434 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 SH3RF1Q7Z6J0 888 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 FAM160B2Q86V87 743 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 ANKRD35Q8N283 1001 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 DEFB123Q8N688 67 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 LENG1Q96BZ8 264 aaPredicted RBP9.03□□□□□ -0.96
CUX1-219ENST00000606749 CHMP4CQ96CF2 233 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 FGD4Q96M96 766 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 AGBL1Q96MI9 1066 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 TSEN34Q9BSV6 310 aaKnown RBP9.03□□□□□ -0.96
CUX1-219ENST00000606749 LNPKQ9C0E8 428 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 FAM184BQ9ULE4 1060 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 STX8Q9UNK0 236 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 ZNF536O15090 1300 aa9.03□□□□□ -0.96
CUX1-219ENST00000606749 COL6A3P12111 3177 aa9.02□□□□□ -0.96
CUX1-219ENST00000606749 LAMA2P24043 3122 aaKnown RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms