RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 IRX5P78411 483 aaPredicted RBP12.48□□□□□ -0.41
LIG1-213ENST00000596672 IRX6P78412 446 aaPredicted RBP12.48□□□□□ -0.41
LIG1-213ENST00000596672 DPP9Q86TI2 863 aa12.48□□□□□ -0.41
LIG1-213ENST00000596672 CHD1LQ86WJ1 897 aa12.48□□□□□ -0.41
LIG1-213ENST00000596672 ZNF444Q8N0Y2 327 aaPredicted RBP12.48□□□□□ -0.41
LIG1-213ENST00000596672 ABRAQ8N0Z2 381 aa12.48□□□□□ -0.41
LIG1-213ENST00000596672 LENG1Q96BZ8 264 aaPredicted RBP12.48□□□□□ -0.41
LIG1-213ENST00000596672 GDF15Q99988 308 aa12.48□□□□□ -0.41
LIG1-213ENST00000596672 OSBPL3Q9H4L5 887 aa12.48□□□□□ -0.41
LIG1-213ENST00000596672 CWC22Q9HCG8 908 aaKnown RBP12.48□□□□□ -0.41
LIG1-213ENST00000596672 RAVER2Q9HCJ3 691 aaKnown RBP12.48□□□□□ -0.41
LIG1-213ENST00000596672 HELLSQ9NRZ9 838 aa12.48□□□□□ -0.41
LIG1-213ENST00000596672 IVNS1ABPQ9Y6Y0 642 aa12.48□□□□□ -0.41
LIG1-213ENST00000596672 ADCY6O43306 1168 aa12.47□□□□□ -0.41
LIG1-213ENST00000596672 TTLL1O95922 423 aa12.47□□□□□ -0.41
LIG1-213ENST00000596672 HSPD1P10809 573 aaKnown RBP12.47□□□□□ -0.41
LIG1-213ENST00000596672 CNGA1P29973 690 aa12.47□□□□□ -0.41
LIG1-213ENST00000596672 GJC2Q5T442 439 aaPredicted RBP12.47□□□□□ -0.41
LIG1-213ENST00000596672 SLFN13Q68D06 897 aa12.47□□□□□ -0.41
LIG1-213ENST00000596672 TBC1D10CQ8IV04 446 aa12.47□□□□□ -0.41
LIG1-213ENST00000596672 GMCL1P1Q8NEA9 526 aa12.47□□□□□ -0.41
LIG1-213ENST00000596672 MMP19Q99542 508 aa12.47□□□□□ -0.41
LIG1-213ENST00000596672 SLC38A10Q9HBR0 1119 aa12.47□□□□□ -0.41
LIG1-213ENST00000596672 ASTN1O14525 1302 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 ATP2A1O14983 1001 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 ORC4O43929 436 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 SLC25A27O95847 323 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 SNAI1O95863 264 aaPredicted RBP12.46□□□□□ -0.41
LIG1-213ENST00000596672 ZNF865P0CJ78 1059 aaPredicted RBP12.46□□□□□ -0.41
LIG1-213ENST00000596672 FCER1AP12319 257 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 CAPN2P17655 700 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 SDSP20132 328 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 PTGS1P23219 599 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 MCCP23508 829 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 HAND2P61296 217 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 MCMDC2Q4G0Z9 681 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 SNRNP48Q6IEG0 339 aaKnown RBP12.46□□□□□ -0.41
LIG1-213ENST00000596672 TTBK2Q6IQ55 1244 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 RCSD1Q6JBY9 416 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 CPXCR1Q8N123 301 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 PRPF38AQ8NAV1 312 aaKnown RBP12.46□□□□□ -0.41
LIG1-213ENST00000596672 KIFC2Q96AC6 838 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 NACAP1Q9BZK3 213 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 RWDD1Q9H446 243 aaPredicted RBP12.46□□□□□ -0.41
LIG1-213ENST00000596672 NR2E3Q9Y5X4 410 aa12.46□□□□□ -0.41
LIG1-213ENST00000596672 TMEM232C9JQI7 657 aa12.45□□□□□ -0.42
LIG1-213ENST00000596672 TSPY3P0CV98 308 aa12.45□□□□□ -0.42
LIG1-213ENST00000596672 TSPY8P0CW00 308 aa12.45□□□□□ -0.42
LIG1-213ENST00000596672 KCTD1Q719H9 257 aa12.45□□□□□ -0.42
LIG1-213ENST00000596672 LRCH3Q96II8 777 aa12.45□□□□□ -0.42
LIG1-213ENST00000596672 AGBL1Q96MI9 1066 aa12.45□□□□□ -0.42
LIG1-213ENST00000596672 TINF2Q9BSI4 451 aa12.45□□□□□ -0.42
LIG1-213ENST00000596672 TEX13BQ9BXU2 312 aa12.45□□□□□ -0.42
LIG1-213ENST00000596672 LAMA4Q16363 1823 aa12.44□□□□□ -0.42
LIG1-213ENST00000596672 CCDC171Q6TFL3 1326 aa12.44□□□□□ -0.42
LIG1-213ENST00000596672 SEPT4O43236 478 aa12.44□□□□□ -0.42
LIG1-213ENST00000596672 RANBP6O60518 1105 aaKnown RBP12.44□□□□□ -0.42
LIG1-213ENST00000596672 BMP3P12645 472 aa12.44□□□□□ -0.42
LIG1-213ENST00000596672 GSPT1P15170 499 aaKnown RBP12.44□□□□□ -0.42
LIG1-213ENST00000596672 MAGEA10P43363 369 aaPredicted RBP12.44□□□□□ -0.42
LIG1-213ENST00000596672 SLC4A3P48751 1232 aa12.44□□□□□ -0.42
LIG1-213ENST00000596672 ATN1P54259 1190 aaPredicted RBP12.44□□□□□ -0.42
LIG1-213ENST00000596672 CNTN2Q02246 1040 aa12.44□□□□□ -0.42
LIG1-213ENST00000596672 PDE4BQ07343 736 aa12.44□□□□□ -0.42
LIG1-213ENST00000596672 LRRC41Q15345 812 aa12.44□□□□□ -0.42
LIG1-213ENST00000596672 LRRFIP1Q32MZ4 808 aaKnown RBP12.44□□□□□ -0.42
LIG1-213ENST00000596672 TMEM63BQ5T3F8 832 aa12.44□□□□□ -0.42
LIG1-213ENST00000596672 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.44□□□□□ -0.42
LIG1-213ENST00000596672 RILPL2Q969X0 211 aa12.44□□□□□ -0.42
LIG1-213ENST00000596672 GMCL1Q96IK5 515 aa12.44□□□□□ -0.42
LIG1-213ENST00000596672 PURBQ96QR8 312 aaKnown RBP12.44□□□□□ -0.42
LIG1-213ENST00000596672 SENP6Q9GZR1 1112 aaPredicted RBP12.44□□□□□ -0.42
LIG1-213ENST00000596672 KATNBL1Q9H079 304 aa12.44□□□□□ -0.42
LIG1-213ENST00000596672 FEM1BQ9UK73 627 aa12.44□□□□□ -0.42
LIG1-213ENST00000596672 SYNPO2Q9UMS6 1093 aa12.44□□□□□ -0.42
LIG1-213ENST00000596672 A0A0C4DFX4 3053 aa12.44□□□□□ -0.42
LIG1-213ENST00000596672 LTBP2Q14767 1821 aa12.44□□□□□ -0.42
LIG1-213ENST00000596672 NEDD4P46934 1319 aa12.43□□□□□ -0.42
LIG1-213ENST00000596672 MYADML2A6NDP7 307 aa12.43□□□□□ -0.42
LIG1-213ENST00000596672 SOWAHBA6NEL2 793 aa12.43□□□□□ -0.42
LIG1-213ENST00000596672 TRIM6-TRIM34B2RNG4 842 aa12.43□□□□□ -0.42
LIG1-213ENST00000596672 PGK1P00558 417 aa12.43□□□□□ -0.42
LIG1-213ENST00000596672 SLC16A2P36021 539 aa12.43□□□□□ -0.42
LIG1-213ENST00000596672 AAMPQ13685 434 aa12.43□□□□□ -0.42
LIG1-213ENST00000596672 MUM1L1Q5H9M0 696 aa12.43□□□□□ -0.42
LIG1-213ENST00000596672 FERMT2Q96AC1 680 aa12.43□□□□□ -0.42
LIG1-213ENST00000596672 TMEM47Q9BQJ4 181 aa12.43□□□□□ -0.42
LIG1-213ENST00000596672 PRR12Q9ULL5 1215 aa12.43□□□□□ -0.42
LIG1-213ENST00000596672 DIS3Q9Y2L1 958 aaKnown RBP12.43□□□□□ -0.42
LIG1-213ENST00000596672 CUL9Q8IWT3 2517 aa12.43□□□□□ -0.42
LIG1-213ENST00000596672 BAZ2BQ9UIF8 2168 aaKnown RBP12.42□□□□□ -0.42
LIG1-213ENST00000596672 TSPY2A6NKD2 308 aa12.42□□□□□ -0.42
LIG1-213ENST00000596672 DNM1LO00429 736 aa12.42□□□□□ -0.42
LIG1-213ENST00000596672 CTAGE5O15320 804 aa12.42□□□□□ -0.42
LIG1-213ENST00000596672 ADAMTS4O75173 837 aa12.42□□□□□ -0.42
LIG1-213ENST00000596672 ADCYAP1R1P41586 468 aa12.42□□□□□ -0.42
LIG1-213ENST00000596672 KCTD2Q14681 263 aa12.42□□□□□ -0.42
LIG1-213ENST00000596672 CWC27Q6UX04 472 aaKnown RBP12.42□□□□□ -0.42
LIG1-213ENST00000596672 MAMDC4Q6UXC1 1216 aa12.42□□□□□ -0.42
LIG1-213ENST00000596672 SH3RF1Q7Z6J0 888 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms