RNA–Protein interactions for RNA: ENST00000584655.5

RFFL-212, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 2 BASIC

Gene RFFL, Length 4,039 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-212ENST00000584655 SIPA1L3O60292 1781 aaPredicted RBP11.67□□□□□ -0.54
RFFL-212ENST00000584655 ASIC1P78348 528 aa11.67□□□□□ -0.54
RFFL-212ENST00000584655 PTPROQ16827 1216 aa11.67□□□□□ -0.54
RFFL-212ENST00000584655 PRR16Q569H4 304 aa11.67□□□□□ -0.54
RFFL-212ENST00000584655 NLGN2Q8NFZ4 835 aa11.67□□□□□ -0.54
RFFL-212ENST00000584655 TBC1D22AQ8WUA7 517 aa11.67□□□□□ -0.54
RFFL-212ENST00000584655 PURBQ96QR8 312 aaKnown RBP11.67□□□□□ -0.54
RFFL-212ENST00000584655 USP27XA6NNY8 438 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 SKILP12757 684 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 ABCB5Q2M3G0 1257 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 DTHD1Q6ZMT9 781 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 TANGO6Q9C0B7 1094 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 ZNF287Q9HBT7 754 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 MAD2L2Q9UI95 211 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 ZKSCAN5Q9Y2L8 839 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 MYH2Q9UKX2 1941 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 CNTNAP5Q8WYK1 1306 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 NHSL1Q5SYE7 1610 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 FMR1Q06787 632 aaKnown RBP eCLIP11.66□□□□□ -0.54
RFFL-212ENST00000584655 CYP2W1Q8TAV3 490 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 CNKSR1Q969H4 720 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 POLR3EQ9NVU0 708 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 RNF216Q9NWF9 866 aaPredicted RBP11.66□□□□□ -0.54
RFFL-212ENST00000584655 MKI67P46013 3256 aaKnown RBP11.66□□□□□ -0.54
RFFL-212ENST00000584655 GPR75-ASB3A0A0A6YYF3 556 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 GOLGA6L6A8MZA4 724 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 ZNF75DP51815 510 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 CRY2Q49AN0 593 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 FAM83BQ5T0W9 1011 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 KRBA2Q6ZNG9 492 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 ADGRF4Q8IZF3 695 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 SLC39A2Q9NP94 309 aa11.66□□□□□ -0.54
RFFL-212ENST00000584655 TPM4P67936 248 aa11.65□□□□□ -0.54
RFFL-212ENST00000584655 ARID5AQ03989 594 aa11.65□□□□□ -0.54
RFFL-212ENST00000584655 NSMFQ6X4W1 530 aa11.65□□□□□ -0.54
RFFL-212ENST00000584655 REXO1Q8N1G1 1221 aaKnown RBP11.65□□□□□ -0.54
RFFL-212ENST00000584655 CRAMP1Q96RY5 1269 aa11.65□□□□□ -0.54
RFFL-212ENST00000584655 RNF26Q9BY78 433 aaPredicted RBP11.65□□□□□ -0.54
RFFL-212ENST00000584655 OSBPL5Q9H0X9 879 aaPredicted RBP11.65□□□□□ -0.54
RFFL-212ENST00000584655 TAB2Q9NYJ8 693 aa11.65□□□□□ -0.54
RFFL-212ENST00000584655 SAMM50Q9Y512 469 aa11.65□□□□□ -0.54
RFFL-212ENST00000584655 YEATS4O95619 227 aa11.65□□□□□ -0.54
RFFL-212ENST00000584655 CMA1P23946 247 aa11.65□□□□□ -0.54
RFFL-212ENST00000584655 POLD1P28340 1107 aa11.65□□□□□ -0.54
RFFL-212ENST00000584655 SEMA3EO15041 775 aa11.65□□□□□ -0.54
RFFL-212ENST00000584655 PLCG2P16885 1265 aa11.65□□□□□ -0.54
RFFL-212ENST00000584655 NOLC1Q14978 699 aaKnown RBP eCLIP11.65□□□□□ -0.54
RFFL-212ENST00000584655 PTPAQ15257 358 aa11.65□□□□□ -0.54
RFFL-212ENST00000584655 ELP1O95163 1332 aa11.65□□□□□ -0.54
RFFL-212ENST00000584655 SPEF2Q9C093 1822 aa11.65□□□□□ -0.55
RFFL-212ENST00000584655 UQCRHLA0A096LP55 91 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 UQCRHP07919 91 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 TXLNAP40222 546 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 CDR1P51861 262 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 EAPPQ56P03 285 aaPredicted RBP11.64□□□□□ -0.55
RFFL-212ENST00000584655 EEPD1Q7L9B9 569 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 TMEM87AQ8NBN3 555 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 ZKSCAN4Q969J2 545 aaPredicted RBP11.64□□□□□ -0.55
RFFL-212ENST00000584655 MTMR4Q9NYA4 1195 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 F5H6K3 240 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 KLRC3Q07444 240 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 ENGASEQ8NFI3 743 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.64□□□□□ -0.55
RFFL-212ENST00000584655 NPHP3-ACAD11A0A0J9YXS1 232 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 PDHBP11177 359 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 TOP1P11387 765 aaKnown RBP11.64□□□□□ -0.55
RFFL-212ENST00000584655 FANCCQ00597 558 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 NCAPH2Q6IBW4 605 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 KCNF1Q9H3M0 494 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 PLCH1Q4KWH8 1693 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 MYH13Q9UKX3 1938 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 PRPF3O43395 683 aaKnown RBP11.64□□□□□ -0.55
RFFL-212ENST00000584655 ONECUT3O60422 494 aaPredicted RBP11.64□□□□□ -0.55
RFFL-212ENST00000584655 MYCLP12524 364 aaPredicted RBP11.64□□□□□ -0.55
RFFL-212ENST00000584655 CXCL9Q07325 125 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 RRP1BQ14684 758 aaKnown RBP11.64□□□□□ -0.55
RFFL-212ENST00000584655 PSTPIP2Q9H939 334 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 C6orf50Q9HD87 102 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 RBM28Q9NW13 759 aaKnown RBP11.64□□□□□ -0.55
RFFL-212ENST00000584655 FAM198AQ9UFP1 575 aa11.64□□□□□ -0.55
RFFL-212ENST00000584655 PPARDQ03181 441 aa11.63□□□□□ -0.55
RFFL-212ENST00000584655 SH3BP5LQ7L8J4 393 aa11.63□□□□□ -0.55
RFFL-212ENST00000584655 MAP3K14Q99558 947 aa11.63□□□□□ -0.55
RFFL-212ENST00000584655 BCAS3Q9H6U6 928 aa11.63□□□□□ -0.55
RFFL-212ENST00000584655 FBXO2Q9UK22 296 aaPredicted RBP11.63□□□□□ -0.55
RFFL-212ENST00000584655 MAN1B1Q9UKM7 699 aa11.63□□□□□ -0.55
RFFL-212ENST00000584655 TFR2Q9UP52 801 aa11.63□□□□□ -0.55
RFFL-212ENST00000584655 TTLL1O95922 423 aa11.63□□□□□ -0.55
RFFL-212ENST00000584655 ALAS1P13196 640 aa11.63□□□□□ -0.55
RFFL-212ENST00000584655 PFKFB3Q16875 520 aaPredicted RBP11.63□□□□□ -0.55
RFFL-212ENST00000584655 CCDC125Q86Z20 511 aa11.63□□□□□ -0.55
RFFL-212ENST00000584655 CRACR2AQ9BSW2 395 aa11.63□□□□□ -0.55
RFFL-212ENST00000584655 TCP11L1Q9NUJ3 509 aa11.63□□□□□ -0.55
RFFL-212ENST00000584655 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.63□□□□□ -0.55
RFFL-212ENST00000584655 RFX7Q2KHR2 1363 aa11.63□□□□□ -0.55
RFFL-212ENST00000584655 CUTAO60888 179 aa11.63□□□□□ -0.55
RFFL-212ENST00000584655 SHMT1P34896 483 aa11.63□□□□□ -0.55
RFFL-212ENST00000584655 MCM6Q14566 821 aa11.63□□□□□ -0.55
RFFL-212ENST00000584655 RASA3Q14644 834 aa11.63□□□□□ -0.55
RFFL-212ENST00000584655 DHX40Q8IX18 779 aaKnown RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms