RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 SNRNP48Q6IEG0 339 aaKnown RBP21.55■■□□□ 1.04
CHD3-214ENST00000572579 RASGRP2Q7LDG7 609 aa21.55■■□□□ 1.04
CHD3-214ENST00000572579 SMC5Q8IY18 1101 aa21.55■■□□□ 1.04
CHD3-214ENST00000572579 KIFC2Q96AC6 838 aa21.55■■□□□ 1.04
CHD3-214ENST00000572579 CHMP4CQ96CF2 233 aa21.55■■□□□ 1.04
CHD3-214ENST00000572579 FGD4Q96M96 766 aa21.55■■□□□ 1.04
CHD3-214ENST00000572579 TINF2Q9BSI4 451 aa21.55■■□□□ 1.04
CHD3-214ENST00000572579 TEX13BQ9BXU2 312 aa21.55■■□□□ 1.04
CHD3-214ENST00000572579 LNPKQ9C0E8 428 aa21.55■■□□□ 1.04
CHD3-214ENST00000572579 ZNF287Q9HBT7 754 aa21.55■■□□□ 1.04
CHD3-214ENST00000572579 SLC5A4Q9NY91 659 aa21.55■■□□□ 1.04
CHD3-214ENST00000572579 SYNPO2Q9UMS6 1093 aa21.55■■□□□ 1.04
CHD3-214ENST00000572579 DIS3Q9Y2L1 958 aaKnown RBP21.55■■□□□ 1.04
CHD3-214ENST00000572579 SNAI1O95863 264 aaPredicted RBP21.54■■□□□ 1.04
CHD3-214ENST00000572579 FGRP09769 529 aa21.54■■□□□ 1.04
CHD3-214ENST00000572579 TSPY3P0CV98 308 aa21.54■■□□□ 1.04
CHD3-214ENST00000572579 TSPY8P0CW00 308 aa21.54■■□□□ 1.04
CHD3-214ENST00000572579 KCTD2Q14681 263 aa21.54■■□□□ 1.04
CHD3-214ENST00000572579 CPXCR1Q8N123 301 aa21.54■■□□□ 1.04
CHD3-214ENST00000572579 LENG1Q96BZ8 264 aaPredicted RBP21.54■■□□□ 1.04
CHD3-214ENST00000572579 ANAPC4Q9UJX5 808 aa21.54■■□□□ 1.04
CHD3-214ENST00000572579 NOVP48745 357 aa21.53■■□□□ 1.04
CHD3-214ENST00000572579 LRRC41Q15345 812 aa21.53■■□□□ 1.04
CHD3-214ENST00000572579 ALX1Q15699 326 aa21.53■■□□□ 1.04
CHD3-214ENST00000572579 ZNF589Q86UQ0 364 aaPredicted RBP21.53■■□□□ 1.04
CHD3-214ENST00000572579 EXOC6Q8TAG9 804 aa21.53■■□□□ 1.04
CHD3-214ENST00000572579 HELLSQ9NRZ9 838 aa21.53■■□□□ 1.04
CHD3-214ENST00000572579 FEM1BQ9UK73 627 aa21.53■■□□□ 1.04
CHD3-214ENST00000572579 FGAP02671 866 aa21.52■■□□□ 1.04
CHD3-214ENST00000572579 BMP3P12645 472 aa21.52■■□□□ 1.04
CHD3-214ENST00000572579 MCCP23508 829 aa21.52■■□□□ 1.04
CHD3-214ENST00000572579 B4GALNT3Q6L9W6 998 aa21.52■■□□□ 1.04
CHD3-214ENST00000572579 SLC39A5Q6ZMH5 540 aa21.52■■□□□ 1.04
CHD3-214ENST00000572579 ARRDC4Q8NCT1 418 aa21.52■■□□□ 1.04
CHD3-214ENST00000572579 LAMA2P24043 3122 aaKnown RBP21.52■■□□□ 1.04
CHD3-214ENST00000572579 COL11A1P12107 1806 aaPredicted RBP21.52■■□□□ 1.04
CHD3-214ENST00000572579 ZNF536O15090 1300 aa21.52■■□□□ 1.03
CHD3-214ENST00000572579 TMEM232C9JQI7 657 aa21.51■■□□□ 1.03
CHD3-214ENST00000572579 ZBED4O75132 1171 aa21.51■■□□□ 1.03
CHD3-214ENST00000572579 COPB2P35606 906 aa21.51■■□□□ 1.03
CHD3-214ENST00000572579 ADCYAP1R1P41586 468 aa21.51■■□□□ 1.03
CHD3-214ENST00000572579 SLC4A3P48751 1232 aa21.51■■□□□ 1.03
CHD3-214ENST00000572579 RTP1P59025 263 aa21.51■■□□□ 1.03
CHD3-214ENST00000572579 MDM2Q00987 491 aaPredicted RBP21.51■■□□□ 1.03
CHD3-214ENST00000572579 NMIQ13287 307 aaPredicted RBP21.51■■□□□ 1.03
CHD3-214ENST00000572579 MCMDC2Q4G0Z9 681 aa21.51■■□□□ 1.03
CHD3-214ENST00000572579 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.51■■□□□ 1.03
CHD3-214ENST00000572579 PLEKHM2Q8IWE5 1019 aa21.51■■□□□ 1.03
CHD3-214ENST00000572579 NRBP1Q9UHY1 535 aa21.51■■□□□ 1.03
CHD3-214ENST00000572579 PGK1P00558 417 aa21.5■■□□□ 1.03
CHD3-214ENST00000572579 SLC3A2P08195 630 aaKnown RBP21.5■■□□□ 1.03
CHD3-214ENST00000572579 SNAP25P60880 206 aa21.5■■□□□ 1.03
CHD3-214ENST00000572579 SNX17Q15036 470 aa21.5■■□□□ 1.03
CHD3-214ENST00000572579 MAMDC4Q6UXC1 1216 aa21.5■■□□□ 1.03
CHD3-214ENST00000572579 FERMT2Q96AC1 680 aa21.5■■□□□ 1.03
CHD3-214ENST00000572579 GMCL1Q96IK5 515 aa21.5■■□□□ 1.03
CHD3-214ENST00000572579 ORC4O43929 436 aa21.49■■□□□ 1.03
CHD3-214ENST00000572579 MYCNP04198 464 aaPredicted RBP21.49■■□□□ 1.03
CHD3-214ENST00000572579 HSPD1P10809 573 aaKnown RBP21.49■■□□□ 1.03
CHD3-214ENST00000572579 IRX5P78411 483 aaPredicted RBP21.49■■□□□ 1.03
CHD3-214ENST00000572579 KCTD1Q719H9 257 aa21.49■■□□□ 1.03
CHD3-214ENST00000572579 AGBL1Q96MI9 1066 aa21.49■■□□□ 1.03
CHD3-214ENST00000572579 UBE2OQ9C0C9 1292 aaKnown RBP21.49■■□□□ 1.03
CHD3-214ENST00000572579 ZBTB47Q9UFB7 747 aaPredicted RBP21.49■■□□□ 1.03
CHD3-214ENST00000572579 FRMPD3Q5JV73 1810 aa21.49■■□□□ 1.03
CHD3-214ENST00000572579 COL6A3P12111 3177 aa21.49■■□□□ 1.03
CHD3-214ENST00000572579 TSPY2A6NKD2 308 aa21.48■■□□□ 1.03
CHD3-214ENST00000572579 ADCY6O43306 1168 aa21.48■■□□□ 1.03
CHD3-214ENST00000572579 SLC1A4P43007 532 aa21.48■■□□□ 1.03
CHD3-214ENST00000572579 NUCB1Q02818 461 aa21.48■■□□□ 1.03
CHD3-214ENST00000572579 CHD1LQ86WJ1 897 aa21.48■■□□□ 1.03
CHD3-214ENST00000572579 STAG1Q8WVM7 1258 aa21.48■■□□□ 1.03
CHD3-214ENST00000572579 XPNPEP3Q9NQH7 507 aa21.48■■□□□ 1.03
CHD3-214ENST00000572579 STX8Q9UNK0 236 aa21.48■■□□□ 1.03
CHD3-214ENST00000572579 ZNFX1Q9P2E3 1918 aaKnown RBP21.48■■□□□ 1.03
CHD3-214ENST00000572579 SMCHD1A6NHR9 2005 aa21.48■■□□□ 1.03
CHD3-214ENST00000572579 RANBP6O60518 1105 aaKnown RBP21.47■■□□□ 1.03
CHD3-214ENST00000572579 ADAMTS4O75173 837 aa21.47■■□□□ 1.03
CHD3-214ENST00000572579 OAZ1P54368 228 aa21.47■■□□□ 1.03
CHD3-214ENST00000572579 CNTN2Q02246 1040 aa21.47■■□□□ 1.03
CHD3-214ENST00000572579 LRIT3Q3SXY7 679 aa21.47■■□□□ 1.03
CHD3-214ENST00000572579 TRIM60Q495X7 471 aa21.47■■□□□ 1.03
CHD3-214ENST00000572579 RCSD1Q6JBY9 416 aa21.47■■□□□ 1.03
CHD3-214ENST00000572579 SH3RF1Q7Z6J0 888 aa21.47■■□□□ 1.03
CHD3-214ENST00000572579 TDHQ8IZJ6 230 aa21.47■■□□□ 1.03
CHD3-214ENST00000572579 DDX11Q96FC9 970 aa21.47■■□□□ 1.03
CHD3-214ENST00000572579 RWDD1Q9H446 243 aaPredicted RBP21.47■■□□□ 1.03
CHD3-214ENST00000572579 PHF24Q9UPV7 400 aa21.47■■□□□ 1.03
CHD3-214ENST00000572579 ATP11BQ9Y2G3 1177 aa21.47■■□□□ 1.03
CHD3-214ENST00000572579 TRIM43BA6NCK2 446 aa21.46■■□□□ 1.03
CHD3-214ENST00000572579 KBTBD13C9JR72 458 aa21.46■■□□□ 1.03
CHD3-214ENST00000572579 RARBP10826 455 aa21.46■■□□□ 1.03
CHD3-214ENST00000572579 AAMPQ13685 434 aa21.46■■□□□ 1.03
CHD3-214ENST00000572579 CCSAPQ6IQ19 270 aaPredicted RBP21.46■■□□□ 1.03
CHD3-214ENST00000572579 TTBK2Q6IQ55 1244 aa21.46■■□□□ 1.03
CHD3-214ENST00000572579 MSL3Q8N5Y2 521 aaKnown RBP21.46■■□□□ 1.03
CHD3-214ENST00000572579 CHST13Q8NET6 341 aa21.46■■□□□ 1.03
CHD3-214ENST00000572579 TRIM43Q96BQ3 446 aaPredicted RBP21.46■■□□□ 1.03
CHD3-214ENST00000572579 KATNBL1Q9H079 304 aa21.46■■□□□ 1.03
CHD3-214ENST00000572579 OSBPL3Q9H4L5 887 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms