RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 NFKBIEO00221 500 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 FIBPO43427 364 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 PPP6R2O75170 966 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 SCG2P13521 617 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 RXRAP19793 462 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 LMNB1P20700 586 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 GNA11P29992 359 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 SHMT1P34896 483 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 KRT2P35908 639 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 NOSTRINQ8IVI9 506 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 BICD2Q8TD16 824 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 DCAF4Q8WV16 495 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 LEO1Q8WVC0 666 aaPredicted RBP9.17□□□□□ -0.94
VPS39-213ENST00000570062 TATDN2Q93075 761 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 PHKBQ93100 1093 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 RRP36Q96EU6 259 aaKnown RBP9.17□□□□□ -0.94
VPS39-213ENST00000570062 CEP95Q96GE4 821 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 CCDC34Q96HJ3 373 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 CSRNP1Q96S65 589 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 MYL10Q9BUA6 226 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 SENP2Q9HC62 589 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 MYOZ2Q9NPC6 264 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 SEC63Q9UGP8 760 aaKnown RBP9.17□□□□□ -0.94
VPS39-213ENST00000570062 CNPY2Q9Y2B0 182 aa9.17□□□□□ -0.94
VPS39-213ENST00000570062 A0A1W2PQ27 194 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 A0A1W2PQ64 194 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 A0A1W2PQD8 194 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 GOLGA6L3A6NEY3 463 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 KLRF2D3W0D1 207 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 MPHOSPH10O00566 681 aaKnown RBP9.16□□□□□ -0.94
VPS39-213ENST00000570062 CTAGE5O15320 804 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 NASPP49321 788 aaPredicted RBP9.16□□□□□ -0.94
VPS39-213ENST00000570062 NLRP5P59047 1200 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 ZNF445P59923 1031 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 MAP3K10Q02779 954 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 FUT2Q10981 343 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 NFIAQ12857 509 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 STK38Q15208 465 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 ABCB5Q2M3G0 1257 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 CCDC183Q5T5S1 534 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 MYSM1Q5VVJ2 828 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 ADALQ6DHV7 355 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 GPC2Q8N158 579 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 ZBED3Q96IU2 234 aaPredicted RBP9.16□□□□□ -0.94
VPS39-213ENST00000570062 PHF20Q9BVI0 1012 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.16□□□□□ -0.94
VPS39-213ENST00000570062 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.16□□□□□ -0.94
VPS39-213ENST00000570062 ARHGEF10LQ9HCE6 1279 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.16□□□□□ -0.94
VPS39-213ENST00000570062 DDX19AQ9NUU7 478 aaKnown RBP9.16□□□□□ -0.94
VPS39-213ENST00000570062 CLIP2Q9UDT6 1046 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 PNMA3Q9UL41 463 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 ARIH1Q9Y4X5 557 aaPredicted RBP9.16□□□□□ -0.94
VPS39-213ENST00000570062 PPP2R3BQ9Y5P8 575 aa9.16□□□□□ -0.94
VPS39-213ENST00000570062 MYO5AQ9Y4I1 1855 aaKnown RBP9.15□□□□□ -0.94
VPS39-213ENST00000570062 NMT2O60551 498 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 CAVIN2O95810 425 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 SNHG28P0DPA3 235 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 AKR1B1P15121 316 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 MRE11P49959 708 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 TCP10Q12799 353 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 ORC2Q13416 577 aaPredicted RBP9.15□□□□□ -0.94
VPS39-213ENST00000570062 TJAP1Q5JTD0 557 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 ANO1Q5XXA6 986 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 PPP1R18Q6NYC8 613 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 CCDC73Q6ZRK6 1079 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 ARHGAP27Q6ZUM4 889 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 RAB11FIP4Q86YS3 637 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 APOBEC3FQ8IUX4 373 aaKnown RBP9.15□□□□□ -0.94
VPS39-213ENST00000570062 DIS3L2Q8IYB7 885 aaKnown RBP9.15□□□□□ -0.94
VPS39-213ENST00000570062 TNS4Q8IZW8 715 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 SRBD1Q8N5C6 995 aaKnown RBP9.15□□□□□ -0.94
VPS39-213ENST00000570062 SLC44A5Q8NCS7 719 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 GMCL1P1Q8NEA9 526 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 NKX2-3Q8TAU0 364 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 ANP32BQ92688 251 aaKnown RBP9.15□□□□□ -0.94
VPS39-213ENST00000570062 NAP1L4Q99733 375 aaKnown RBP9.15□□□□□ -0.94
VPS39-213ENST00000570062 PYM1Q9BRP8 204 aaKnown RBP9.15□□□□□ -0.94
VPS39-213ENST00000570062 C6orf50Q9HD87 102 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 MAD2L2Q9UI95 211 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 PNMA2Q9UL42 364 aa9.15□□□□□ -0.94
VPS39-213ENST00000570062 CNTNAP5Q8WYK1 1306 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 ZC3H4Q9UPT8 1303 aaKnown RBP9.14□□□□□ -0.95
VPS39-213ENST00000570062 MYH2Q9UKX2 1941 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 ESYT2A0FGR8 921 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 DDTLA6NHG4 134 aaPredicted RBP9.14□□□□□ -0.95
VPS39-213ENST00000570062 C3orf80F5H4A9 247 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 WNT10BO00744 389 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 SPTLC2O15270 562 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 ASNSP08243 561 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 PDHBP11177 359 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 ME1P48163 572 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 GUCY1B3Q02153 619 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 SLC39A14Q15043 492 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 PKN1Q16512 942 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 FOXD4L6Q3SYB3 417 aaPredicted RBP9.14□□□□□ -0.95
VPS39-213ENST00000570062 DCAF15Q66K64 600 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 CAVIN1Q6NZI2 390 aaKnown RBP9.14□□□□□ -0.95
VPS39-213ENST00000570062 FOXD4L3Q6VB84 417 aaPredicted RBP9.14□□□□□ -0.95
VPS39-213ENST00000570062 PAXIP1Q6ZW49 1069 aaPredicted RBP9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms