RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 ZNF543Q08ER8 600 aa11.51□□□□□ -0.57
CLK3-220ENST00000567992 TRDNQ13061 729 aa11.51□□□□□ -0.57
CLK3-220ENST00000567992 SLC9C1Q4G0N8 1177 aa11.51□□□□□ -0.57
CLK3-220ENST00000567992 CCDC178Q5BJE1 867 aa11.51□□□□□ -0.57
CLK3-220ENST00000567992 CHST3Q7LGC8 479 aa11.51□□□□□ -0.57
CLK3-220ENST00000567992 RALYLQ86SE5 291 aaKnown RBP11.51□□□□□ -0.57
CLK3-220ENST00000567992 FAM160B2Q86V87 743 aa11.51□□□□□ -0.57
CLK3-220ENST00000567992 RIOX2Q8IUF8 465 aa11.51□□□□□ -0.57
CLK3-220ENST00000567992 RAET1EQ8TD07 263 aa11.51□□□□□ -0.57
CLK3-220ENST00000567992 SOCS4Q8WXH5 440 aa11.51□□□□□ -0.57
CLK3-220ENST00000567992 KCNB2Q92953 911 aa11.51□□□□□ -0.57
CLK3-220ENST00000567992 UBAC1Q9BSL1 405 aa11.51□□□□□ -0.57
CLK3-220ENST00000567992 PRR12Q9ULL5 1215 aa11.51□□□□□ -0.57
CLK3-220ENST00000567992 MTMR7Q9Y216 660 aa11.51□□□□□ -0.57
CLK3-220ENST00000567992 RIPK3Q9Y572 518 aa11.51□□□□□ -0.57
CLK3-220ENST00000567992 SMCHD1A6NHR9 2005 aa11.51□□□□□ -0.57
CLK3-220ENST00000567992 ZNF536O15090 1300 aa11.51□□□□□ -0.57
CLK3-220ENST00000567992 FRMPD2Q68DX3 1309 aaPredicted RBP11.51□□□□□ -0.57
CLK3-220ENST00000567992 LCTP09848 1927 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 MKI67P46013 3256 aaKnown RBP11.5□□□□□ -0.57
CLK3-220ENST00000567992 CCDC85CA6NKD9 419 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 ADCY3O60266 1144 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 IGHA2P01877 340 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 GRK4P32298 578 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 HSPA4P34932 840 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 STAT3P40763 770 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 OAZ1P54368 228 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 PLS1Q14651 629 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 CCDC96Q2M329 555 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 TSGA10IPQ3SY00 556 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 SNRNP48Q6IEG0 339 aaKnown RBP11.5□□□□□ -0.57
CLK3-220ENST00000567992 SLAIN1Q8ND83 568 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 PXYLP1Q8TE99 480 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 TRIB2Q92519 343 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 TEX13BQ9BXU2 312 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 MROH8Q9H579 483 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 KAT14Q9H8E8 782 aa11.5□□□□□ -0.57
CLK3-220ENST00000567992 GPHNQ9NQX3 736 aaPredicted RBP11.5□□□□□ -0.57
CLK3-220ENST00000567992 SLC15A5A6NIM6 579 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 CAPN15O75808 1086 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 SLC25A27O95847 323 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 HOXC6P09630 235 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 GOLGA8HP0CJ92 632 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 XRCC5P13010 732 aaKnown RBP11.49□□□□□ -0.57
CLK3-220ENST00000567992 TAL1P17542 331 aaPredicted RBP11.49□□□□□ -0.57
CLK3-220ENST00000567992 CYP2B6P20813 491 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 SLC16A2P36021 539 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 RGS2P41220 211 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 SNAP25P60880 206 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 MAP2K5Q13163 448 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 ADCK5Q3MIX3 580 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 IFIT1BQ5T764 474 aaKnown RBP11.49□□□□□ -0.57
CLK3-220ENST00000567992 SYDE2Q5VT97 1194 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 WDR78Q5VTH9 848 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.49□□□□□ -0.57
CLK3-220ENST00000567992 NCAPG2Q86XI2 1143 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 IGDCC4Q8TDY8 1250 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 CHURC1Q8WUH1 139 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 APBA2Q99767 749 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 NUDT12Q9BQG2 462 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 RANBP17Q9H2T7 1088 aaKnown RBP11.49□□□□□ -0.57
CLK3-220ENST00000567992 CPVLQ9H3G5 476 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 LY9Q9HBG7 655 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 RAVER2Q9HCJ3 691 aaKnown RBP11.49□□□□□ -0.57
CLK3-220ENST00000567992 GPCPD1Q9NPB8 672 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 ISY1Q9ULR0 285 aaKnown RBP11.49□□□□□ -0.57
CLK3-220ENST00000567992 FRMPD3Q5JV73 1810 aa11.49□□□□□ -0.57
CLK3-220ENST00000567992 SH2B2O14492 632 aaPredicted RBP11.48□□□□□ -0.57
CLK3-220ENST00000567992 IFIT3O14879 490 aaKnown RBP11.48□□□□□ -0.57
CLK3-220ENST00000567992 PRC1O43663 620 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 COBLO75128 1261 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 ZBED4O75132 1171 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 INHAP05111 366 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 FDX1P10109 184 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 ADORA2AP29274 412 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 MCM5P33992 734 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 SOX10P56693 466 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 TROAPQ12815 778 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 TRIM32Q13049 653 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 MTFR1Q15390 333 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 CCL14Q16627 93 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 SLC35G1Q2M3R5 365 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 TMEM67Q5HYA8 995 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 GPATCH4Q5T3I0 446 aaKnown RBP11.48□□□□□ -0.57
CLK3-220ENST00000567992 RNF20Q5VTR2 975 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 PPP4R3CPQ6ZMV5 832 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 CCAR1Q8IX12 1150 aaKnown RBP11.48□□□□□ -0.57
CLK3-220ENST00000567992 ABRAQ8N0Z2 381 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 CPXCR1Q8N123 301 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 NPLOC4Q8TAT6 608 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 AGBL1Q96MI9 1066 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 MTA3Q9BTC8 594 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 FLRT1Q9NZU1 646 aa11.48□□□□□ -0.57
CLK3-220ENST00000567992 KIAA0100Q14667 2235 aaKnown RBP11.48□□□□□ -0.57
CLK3-220ENST00000567992 MYH6P13533 1939 aa11.47□□□□□ -0.57
CLK3-220ENST00000567992 LRRC37A2A6NM11 1700 aa11.47□□□□□ -0.57
CLK3-220ENST00000567992 EPB41L2O43491 1005 aaKnown RBP11.47□□□□□ -0.57
CLK3-220ENST00000567992 STRNO43815 780 aa11.47□□□□□ -0.57
CLK3-220ENST00000567992 REC8O95072 547 aa11.47□□□□□ -0.57
CLK3-220ENST00000567992 HMGCRP04035 888 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms