RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 TERF2Q15554 542 aa15.23■□□□□ 0.03
CLK3-215ENST00000564353 HINFPQ9BQA5 517 aa15.23■□□□□ 0.03
CLK3-215ENST00000564353 PARD6BQ9BYG5 372 aa15.23■□□□□ 0.03
CLK3-215ENST00000564353 KCNJ18B7U540 433 aa15.22■□□□□ 0.03
CLK3-215ENST00000564353 IRX3P78415 501 aaPredicted RBP15.22■□□□□ 0.03
CLK3-215ENST00000564353 KCNJ12Q14500 433 aa15.22■□□□□ 0.03
CLK3-215ENST00000564353 USP17L2Q6R6M4 530 aa15.22■□□□□ 0.03
CLK3-215ENST00000564353 CLEC4GQ6UXB4 293 aa15.22■□□□□ 0.03
CLK3-215ENST00000564353 CLEC10AQ8IUN9 316 aa15.22■□□□□ 0.03
CLK3-215ENST00000564353 RGS22Q8NE09 1264 aa15.22■□□□□ 0.03
CLK3-215ENST00000564353 CACNA1SQ13698 1873 aa15.22■□□□□ 0.03
CLK3-215ENST00000564353 LDHBP07195 334 aaKnown RBP15.22■□□□□ 0.03
CLK3-215ENST00000564353 RHOXF2BP0C7M4 288 aa15.22■□□□□ 0.03
CLK3-215ENST00000564353 CHRM1P11229 460 aaPredicted RBP15.22■□□□□ 0.03
CLK3-215ENST00000564353 KLK7P49862 253 aa15.22■□□□□ 0.03
CLK3-215ENST00000564353 BMS1Q14692 1282 aaKnown RBP15.22■□□□□ 0.03
CLK3-215ENST00000564353 KIF4BQ2VIQ3 1234 aa15.22■□□□□ 0.03
CLK3-215ENST00000564353 LETM2Q2VYF4 491 aa15.22■□□□□ 0.03
CLK3-215ENST00000564353 BARGINQ6ZT62 677 aa15.22■□□□□ 0.03
CLK3-215ENST00000564353 SLC35F6Q8N357 371 aa15.22■□□□□ 0.03
CLK3-215ENST00000564353 RHOXF2Q9BQY4 288 aa15.22■□□□□ 0.03
CLK3-215ENST00000564353 UBA5Q9GZZ9 404 aa15.22■□□□□ 0.03
CLK3-215ENST00000564353 SUGCTQ9HAC7 445 aa15.22■□□□□ 0.03
CLK3-215ENST00000564353 BCORQ6W2J9 1755 aa15.21■□□□□ 0.03
CLK3-215ENST00000564353 ENC1O14682 589 aa15.21■□□□□ 0.03
CLK3-215ENST00000564353 SLURP2P0DP57 97 aa15.21■□□□□ 0.03
CLK3-215ENST00000564353 RCAN1P53805 252 aa15.21■□□□□ 0.03
CLK3-215ENST00000564353 ARHGEF1Q92888 912 aaKnown RBP15.21■□□□□ 0.03
CLK3-215ENST00000564353 EFCAB8A8MWE9 144 aa15.21■□□□□ 0.03
CLK3-215ENST00000564353 KRT9P35527 623 aa15.21■□□□□ 0.03
CLK3-215ENST00000564353 COPB1P53618 953 aaKnown RBP15.21■□□□□ 0.03
CLK3-215ENST00000564353 ELOA2Q8IYF1 753 aaPredicted RBP15.21■□□□□ 0.03
CLK3-215ENST00000564353 SMARCC1Q92922 1105 aaPredicted RBP15.21■□□□□ 0.03
CLK3-215ENST00000564353 MTA3Q9BTC8 594 aa15.21■□□□□ 0.03
CLK3-215ENST00000564353 ATP8A2Q9NTI2 1148 aa15.21■□□□□ 0.03
CLK3-215ENST00000564353 ARPP21Q9UBL0 812 aaPredicted RBP15.21■□□□□ 0.03
CLK3-215ENST00000564353 F8W031 263 aaPredicted RBP15.21■□□□□ 0.02
CLK3-215ENST00000564353 ORC4O43929 436 aa15.21■□□□□ 0.02
CLK3-215ENST00000564353 PPP2R5BQ15173 497 aa15.21■□□□□ 0.02
CLK3-215ENST00000564353 TPTE2Q6XPS3 522 aa15.21■□□□□ 0.02
CLK3-215ENST00000564353 ZNF444Q8N0Y2 327 aaPredicted RBP15.21■□□□□ 0.02
CLK3-215ENST00000564353 MAD2L2Q9UI95 211 aa15.21■□□□□ 0.02
CLK3-215ENST00000564353 GUCA1BQ9UMX6 200 aa15.21■□□□□ 0.02
CLK3-215ENST00000564353 PCDHA6Q9UN73 950 aa15.21■□□□□ 0.02
CLK3-215ENST00000564353 PCDHA8Q9Y5H6 950 aa15.21■□□□□ 0.02
CLK3-215ENST00000564353 ARAP2Q8WZ64 1704 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 FGRP09769 529 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 KIF5BP33176 963 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 NAALADL2Q58DX5 795 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 TCP11X2Q5H9J9 407 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 DTHD1Q6ZMT9 781 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 FCHSD1Q86WN1 690 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 SRRTQ9BXP5 876 aaKnown RBP15.2■□□□□ 0.02
CLK3-215ENST00000564353 ARGLU1Q9NWB6 273 aaPredicted RBP15.2■□□□□ 0.02
CLK3-215ENST00000564353 CCNL1Q9UK58 526 aaPredicted RBP15.2■□□□□ 0.02
CLK3-215ENST00000564353 MYO1BO43795 1136 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 KIF5CO60282 957 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 PBX1P40424 430 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 UBA7P41226 1012 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 C12orf60Q5U649 245 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 C4orf32Q8N8J7 132 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 GJA10Q969M2 543 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 TRERF1Q96PN7 1200 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 TMEM47Q9BQJ4 181 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 NOL10Q9BSC4 688 aaKnown RBP15.2■□□□□ 0.02
CLK3-215ENST00000564353 ABHD10Q9NUJ1 306 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 PCDHA4Q9UN74 947 aa15.2■□□□□ 0.02
CLK3-215ENST00000564353 MYH6P13533 1939 aa15.19■□□□□ 0.02
CLK3-215ENST00000564353 GTPBP6O43824 516 aaPredicted RBP15.19■□□□□ 0.02
CLK3-215ENST00000564353 CCNT1O60563 726 aaKnown RBP15.19■□□□□ 0.02
CLK3-215ENST00000564353 TM4SF1P30408 202 aa15.19■□□□□ 0.02
CLK3-215ENST00000564353 CCDC178Q5BJE1 867 aa15.19■□□□□ 0.02
CLK3-215ENST00000564353 JAKMIP3Q5VZ66 844 aa15.19■□□□□ 0.02
CLK3-215ENST00000564353 FRMPD2Q68DX3 1309 aaPredicted RBP15.19■□□□□ 0.02
CLK3-215ENST00000564353 TRIM47Q96LD4 638 aa15.19■□□□□ 0.02
CLK3-215ENST00000564353 PANX2Q96RD6 677 aa15.19■□□□□ 0.02
CLK3-215ENST00000564353 DISC1Q9NRI5 854 aa15.19■□□□□ 0.02
CLK3-215ENST00000564353 HDAC6Q9UBN7 1215 aa15.19■□□□□ 0.02
CLK3-215ENST00000564353 TECP42680 631 aa15.19■□□□□ 0.02
CLK3-215ENST00000564353 NCAPH2Q6IBW4 605 aa15.19■□□□□ 0.02
CLK3-215ENST00000564353 TMEM260Q9NX78 707 aa15.19■□□□□ 0.02
CLK3-215ENST00000564353 BIN2Q9UBW5 565 aaPredicted RBP15.19■□□□□ 0.02
CLK3-215ENST00000564353 B4DLN1 442 aa15.18■□□□□ 0.02
CLK3-215ENST00000564353 PARP1P09874 1014 aaKnown RBP15.18■□□□□ 0.02
CLK3-215ENST00000564353 FCER1AP12319 257 aa15.18■□□□□ 0.02
CLK3-215ENST00000564353 TXLNAP40222 546 aa15.18■□□□□ 0.02
CLK3-215ENST00000564353 CHMP4BP1P59074 171 aa15.18■□□□□ 0.02
CLK3-215ENST00000564353 PICALMQ13492 652 aa15.18■□□□□ 0.02
CLK3-215ENST00000564353 CC2D1AQ6P1N0 951 aaPredicted RBP15.18■□□□□ 0.02
CLK3-215ENST00000564353 IRF2BP1Q8IU81 584 aa15.18■□□□□ 0.02
CLK3-215ENST00000564353 PCMTD1Q96MG8 357 aaPredicted RBP15.18■□□□□ 0.02
CLK3-215ENST00000564353 NARFQ9UHQ1 456 aa15.18■□□□□ 0.02
CLK3-215ENST00000564353 NRAPQ86VF7 1730 aa15.18■□□□□ 0.02
CLK3-215ENST00000564353 TTC26A0AVF1 554 aa15.18■□□□□ 0.02
CLK3-215ENST00000564353 KLRF2D3W0D1 207 aa15.18■□□□□ 0.02
CLK3-215ENST00000564353 RAD21O60216 631 aa15.18■□□□□ 0.02
CLK3-215ENST00000564353 ZRANB2O95218 330 aaKnown RBP eCLIP15.18■□□□□ 0.02
CLK3-215ENST00000564353 TBC1D8O95759 1140 aa15.18■□□□□ 0.02
CLK3-215ENST00000564353 TPM1P09493 284 aa15.18■□□□□ 0.02
CLK3-215ENST00000564353 NAPAP54920 295 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms