RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 CITED4Q96RK1 184 aa5.46□□□□□ -1.54
LIMA1-206ENST00000550611 SLAMF8Q9P0V8 285 aa5.46□□□□□ -1.54
LIMA1-206ENST00000550611 CAPN6Q9Y6Q1 641 aa5.46□□□□□ -1.54
LIMA1-206ENST00000550611 NDUFB5O43674 189 aa5.45□□□□□ -1.54
LIMA1-206ENST00000550611 ZBTB7AO95365 584 aa5.45□□□□□ -1.54
LIMA1-206ENST00000550611 HPXP02790 462 aa5.45□□□□□ -1.54
LIMA1-206ENST00000550611 BMP7P18075 431 aa5.45□□□□□ -1.54
LIMA1-206ENST00000550611 VPS72Q15906 364 aa5.45□□□□□ -1.54
LIMA1-206ENST00000550611 SYT17Q9BSW7 474 aa5.45□□□□□ -1.54
LIMA1-206ENST00000550611 PICK1Q9NRD5 415 aa5.45□□□□□ -1.54
LIMA1-206ENST00000550611 PPP4R2Q9NY27 417 aa5.45□□□□□ -1.54
LIMA1-206ENST00000550611 RTEL1Q9NZ71 1219 aa5.45□□□□□ -1.54
LIMA1-206ENST00000550611 PCNTO95613 3336 aa5.45□□□□□ -1.54
LIMA1-206ENST00000550611 NINLQ9Y2I6 1382 aa5.44□□□□□ -1.54
LIMA1-206ENST00000550611 CROCC2H7BZ55 1655 aa5.44□□□□□ -1.54
LIMA1-206ENST00000550611 FCGRTP55899 365 aa5.44□□□□□ -1.54
LIMA1-206ENST00000550611 FGD1P98174 961 aa5.44□□□□□ -1.54
LIMA1-206ENST00000550611 NFIXQ14938 502 aa5.44□□□□□ -1.54
LIMA1-206ENST00000550611 SCARA3Q6AZY7 606 aa5.44□□□□□ -1.54
LIMA1-206ENST00000550611 ZNF507Q8TCN5 953 aa5.44□□□□□ -1.54
LIMA1-206ENST00000550611 CCDC97Q96F63 343 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-206ENST00000550611 ADGRL3Q9HAR2 1447 aa5.44□□□□□ -1.54
LIMA1-206ENST00000550611 TMEM59LQ9UK28 342 aa5.44□□□□□ -1.54
LIMA1-206ENST00000550611 SERPINA10Q9UK55 444 aa5.44□□□□□ -1.54
LIMA1-206ENST00000550611 TPX2Q9ULW0 747 aaKnown RBP5.44□□□□□ -1.54
LIMA1-206ENST00000550611 CSADQ9Y600 493 aa5.44□□□□□ -1.54
LIMA1-206ENST00000550611 CNTNAP4Q9C0A0 1308 aa5.44□□□□□ -1.54
LIMA1-206ENST00000550611 TRPM2O94759 1503 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 ROCK1Q13464 1354 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 UNC13BO14795 1591 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 DNAJC25-GNG10A0A024R161 153 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 FAM83GA6ND36 823 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 DCDC2CA8MYV0 355 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 PEX10O60683 326 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 SEMA7AO75326 666 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 IGHA2P01877 340 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 HSPA6P17066 643 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 CAP2P40123 477 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 PRELPP51888 382 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 KRTAP10-2P60368 255 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 DLG4P78352 724 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 FAM50AQ14320 339 aaKnown RBP5.43□□□□□ -1.54
LIMA1-206ENST00000550611 NBPF8Q3BBV2 869 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 TMPRSS7Q7RTY8 843 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 C12orf40Q86WS4 652 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 IRF2BP1Q8IU81 584 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 MARCH10Q8NA82 808 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-206ENST00000550611 CXorf38Q8TB03 319 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 EPS8L3Q8TE67 593 aaKnown RBP5.43□□□□□ -1.54
LIMA1-206ENST00000550611 UBE2FQ969M7 185 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 COX4I2Q96KJ9 171 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 MYOM2P54296 1465 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 C1orf167Q5SNV9 1468 aa5.43□□□□□ -1.54
LIMA1-206ENST00000550611 NUP155O75694 1391 aa5.42□□□□□ -1.54
LIMA1-206ENST00000550611 ERVFC1P60507 584 aa5.42□□□□□ -1.54
LIMA1-206ENST00000550611 ARHGAP4P98171 946 aa5.42□□□□□ -1.54
LIMA1-206ENST00000550611 RALGPS1Q5JS13 557 aa5.42□□□□□ -1.54
LIMA1-206ENST00000550611 ZNF746Q6NUN9 644 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-206ENST00000550611 MPRIPQ6WCQ1 1025 aa5.42□□□□□ -1.54
LIMA1-206ENST00000550611 DNAJC5GQ8N7S2 189 aa5.42□□□□□ -1.54
LIMA1-206ENST00000550611 MCOLN1Q9GZU1 580 aa5.42□□□□□ -1.54
LIMA1-206ENST00000550611 SLIT2O94813 1529 aa5.42□□□□□ -1.54
LIMA1-206ENST00000550611 XRN1Q8IZH2 1706 aaKnown RBP5.41□□□□□ -1.54
LIMA1-206ENST00000550611 ESR1P03372 595 aa5.41□□□□□ -1.54
LIMA1-206ENST00000550611 HK2P52789 917 aa5.41□□□□□ -1.54
LIMA1-206ENST00000550611 GPR162Q16538 588 aa5.41□□□□□ -1.54
LIMA1-206ENST00000550611 TCERG1LQ5VWI1 586 aa5.41□□□□□ -1.54
LIMA1-206ENST00000550611 MFSD2AQ8NA29 543 aa5.41□□□□□ -1.54
LIMA1-206ENST00000550611 BORCS6Q96GS4 357 aa5.41□□□□□ -1.54
LIMA1-206ENST00000550611 RNF32Q9H0A6 362 aa5.41□□□□□ -1.54
LIMA1-206ENST00000550611 CBX8Q9HC52 389 aa5.41□□□□□ -1.54
LIMA1-206ENST00000550611 ZSWIM5Q9P217 1185 aa5.41□□□□□ -1.54
LIMA1-206ENST00000550611 SAMM50Q9Y512 469 aa5.41□□□□□ -1.54
LIMA1-206ENST00000550611 ROBO2Q9HCK4 1378 aa5.41□□□□□ -1.54
LIMA1-206ENST00000550611 NRXN3Q9Y4C0 1643 aa5.41□□□□□ -1.54
LIMA1-206ENST00000550611 GCC2Q8IWJ2 1684 aa5.4□□□□□ -1.54
LIMA1-206ENST00000550611 PRAG1Q86YV5 1406 aa5.4□□□□□ -1.54
LIMA1-206ENST00000550611 MYO5BQ9ULV0 1848 aa5.4□□□□□ -1.54
LIMA1-206ENST00000550611 GPR182O15218 404 aa5.4□□□□□ -1.54
LIMA1-206ENST00000550611 BMP6P22004 513 aa5.4□□□□□ -1.54
LIMA1-206ENST00000550611 KIR3DL1P43629 444 aa5.4□□□□□ -1.54
LIMA1-206ENST00000550611 ZNF385BQ569K4 471 aa5.4□□□□□ -1.54
LIMA1-206ENST00000550611 ZNF326Q5BKZ1 582 aaKnown RBP5.4□□□□□ -1.54
LIMA1-206ENST00000550611 TMEM151BQ8IW70 566 aa5.4□□□□□ -1.54
LIMA1-206ENST00000550611 GRIN3AQ8TCU5 1115 aa5.4□□□□□ -1.54
LIMA1-206ENST00000550611 ZNF526Q8TF50 670 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-206ENST00000550611 NECAB3Q96P71 396 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-206ENST00000550611 MIPEPQ99797 713 aa5.4□□□□□ -1.54
LIMA1-206ENST00000550611 KRTAP9-8Q9BYQ0 159 aa5.4□□□□□ -1.54
LIMA1-206ENST00000550611 SLC6A17Q9H1V8 727 aa5.4□□□□□ -1.54
LIMA1-206ENST00000550611 SP110Q9HB58 689 aa5.4□□□□□ -1.54
LIMA1-206ENST00000550611 CNOT6Q9ULM6 557 aaKnown RBP5.4□□□□□ -1.54
LIMA1-206ENST00000550611 LAMC1P11047 1609 aa5.4□□□□□ -1.55
LIMA1-206ENST00000550611 CHD4Q14839 1912 aa5.4□□□□□ -1.55
LIMA1-206ENST00000550611 TEX51A0A1B0GUA7 166 aa5.39□□□□□ -1.55
LIMA1-206ENST00000550611 MYOCOSA0A1B0GUC4 107 aa5.39□□□□□ -1.55
LIMA1-206ENST00000550611 H3BRB1 525 aa5.39□□□□□ -1.55
LIMA1-206ENST00000550611 TRIM13O60858 407 aa5.39□□□□□ -1.55
LIMA1-206ENST00000550611 HTRA3P83110 453 aa5.39□□□□□ -1.55
LIMA1-206ENST00000550611 NFKB2Q00653 900 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms