RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 FMR1NBQ8N0W7 255 aaPredicted RBP15.36■□□□□ 0.05
PTCH1-215ENST00000547672 GPC2Q8N158 579 aa15.36■□□□□ 0.05
PTCH1-215ENST00000547672 OXER1Q8TDS5 423 aa15.36■□□□□ 0.05
PTCH1-215ENST00000547672 PIBF1Q8WXW3 757 aa15.36■□□□□ 0.05
PTCH1-215ENST00000547672 TNFRSF25Q93038 417 aa15.36■□□□□ 0.05
PTCH1-215ENST00000547672 FTOQ9C0B1 505 aaKnown RBP eCLIP15.36■□□□□ 0.05
PTCH1-215ENST00000547672 DNAJC18Q9H819 358 aa15.36■□□□□ 0.05
PTCH1-215ENST00000547672 VAT1LQ9HCJ6 419 aa15.36■□□□□ 0.05
PTCH1-215ENST00000547672 GPCPD1Q9NPB8 672 aa15.36■□□□□ 0.05
PTCH1-215ENST00000547672 GJA3Q9Y6H8 435 aa15.36■□□□□ 0.05
PTCH1-215ENST00000547672 GREB1LQ9C091 1923 aaPredicted RBP15.35■□□□□ 0.05
PTCH1-215ENST00000547672 F5H6K3 240 aa15.35■□□□□ 0.05
PTCH1-215ENST00000547672 UBE2Q2LH0YL09 131 aa15.35■□□□□ 0.05
PTCH1-215ENST00000547672 ZBTB5O15062 677 aa15.35■□□□□ 0.05
PTCH1-215ENST00000547672 GH2P01242 217 aa15.35■□□□□ 0.05
PTCH1-215ENST00000547672 MARCKSP29966 332 aaPredicted RBP15.35■□□□□ 0.05
PTCH1-215ENST00000547672 KLRC3Q07444 240 aa15.35■□□□□ 0.05
PTCH1-215ENST00000547672 RESP18Q5W5W9 173 aa15.35■□□□□ 0.05
PTCH1-215ENST00000547672 DCAF15Q66K64 600 aa15.35■□□□□ 0.05
PTCH1-215ENST00000547672 APOBEC3FQ8IUX4 373 aaKnown RBP15.35■□□□□ 0.05
PTCH1-215ENST00000547672 MICALL2Q8IY33 904 aa15.35■□□□□ 0.05
PTCH1-215ENST00000547672 CHURC1Q8WUH1 139 aa15.35■□□□□ 0.05
PTCH1-215ENST00000547672 NAT10Q9H0A0 1025 aaKnown RBP15.35■□□□□ 0.05
PTCH1-215ENST00000547672 CNTNAP1P78357 1384 aa15.35■□□□□ 0.05
PTCH1-215ENST00000547672 ZNF202O95125 648 aa15.34■□□□□ 0.05
PTCH1-215ENST00000547672 BMP3P12645 472 aa15.34■□□□□ 0.05
PTCH1-215ENST00000547672 ADCY7P51828 1080 aa15.34■□□□□ 0.05
PTCH1-215ENST00000547672 SNW1Q13573 536 aaKnown RBP15.34■□□□□ 0.05
PTCH1-215ENST00000547672 NONOQ15233 471 aaKnown RBP eCLIP15.34■□□□□ 0.05
PTCH1-215ENST00000547672 PIK3AP1Q6ZUJ8 805 aa15.34■□□□□ 0.05
PTCH1-215ENST00000547672 HOMER1Q86YM7 354 aa15.34■□□□□ 0.05
PTCH1-215ENST00000547672 ADGRF4Q8IZF3 695 aa15.34■□□□□ 0.05
PTCH1-215ENST00000547672 MTMR8Q96EF0 704 aa15.34■□□□□ 0.05
PTCH1-215ENST00000547672 PIGSQ96S52 555 aa15.34■□□□□ 0.05
PTCH1-215ENST00000547672 UBA5Q9GZZ9 404 aa15.34■□□□□ 0.05
PTCH1-215ENST00000547672 PPP2R3BQ9Y5P8 575 aa15.34■□□□□ 0.05
PTCH1-215ENST00000547672 MYH4Q9Y623 1939 aa15.34■□□□□ 0.05
PTCH1-215ENST00000547672 COL4A5P29400 1685 aa15.34■□□□□ 0.05
PTCH1-215ENST00000547672 A0A1B0GVL5 298 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 PLA2G6O60733 806 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 ATP2B1P20020 1258 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 CAP2P40123 477 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 NDUFA8P51970 172 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 CCDC173Q0VFZ6 552 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 RASA3Q14644 834 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 NPY5RQ15761 445 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 CAMK4Q16566 473 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 NBPF9Q3BBW0 867 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 BTNL9Q6UXG8 535 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 REXO1Q8N1G1 1221 aaKnown RBP15.33■□□□□ 0.04
PTCH1-215ENST00000547672 GPKOWQ92917 476 aaPredicted RBP eCLIP15.33■□□□□ 0.04
PTCH1-215ENST00000547672 RBSNQ9H1K0 784 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 JMJD4Q9H9V9 463 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 ANO10Q9NW15 660 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 PNMA2Q9UL42 364 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 KCNH3Q9ULD8 1083 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 PCDHA6Q9UN73 950 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 TMX2Q9Y320 296 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 PCDHB6Q9Y5E3 794 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 PCDHA8Q9Y5H6 950 aa15.33■□□□□ 0.04
PTCH1-215ENST00000547672 FRMPD2Q68DX3 1309 aaPredicted RBP15.33■□□□□ 0.04
PTCH1-215ENST00000547672 M0R2N6 131 aa15.32■□□□□ 0.04
PTCH1-215ENST00000547672 RAD21O60216 631 aa15.32■□□□□ 0.04
PTCH1-215ENST00000547672 CTNND1O60716 968 aaKnown RBP15.32■□□□□ 0.04
PTCH1-215ENST00000547672 GDF11O95390 407 aa15.32■□□□□ 0.04
PTCH1-215ENST00000547672 PFKFB1P16118 471 aa15.32■□□□□ 0.04
PTCH1-215ENST00000547672 TXLNAP40222 546 aa15.32■□□□□ 0.04
PTCH1-215ENST00000547672 RASSF7Q02833 373 aa15.32■□□□□ 0.04
PTCH1-215ENST00000547672 TYRO3Q06418 890 aa15.32■□□□□ 0.04
PTCH1-215ENST00000547672 KIF4BQ2VIQ3 1234 aa15.32■□□□□ 0.04
PTCH1-215ENST00000547672 FAM160B2Q86V87 743 aa15.32■□□□□ 0.04
PTCH1-215ENST00000547672 NLGN2Q8NFZ4 835 aa15.32■□□□□ 0.04
PTCH1-215ENST00000547672 CUL5Q93034 780 aa15.32■□□□□ 0.04
PTCH1-215ENST00000547672 TMEM39BQ9GZU3 492 aa15.32■□□□□ 0.04
PTCH1-215ENST00000547672 RIC8AQ9NPQ8 531 aa15.32■□□□□ 0.04
PTCH1-215ENST00000547672 FBXO2Q9UK22 296 aaPredicted RBP15.32■□□□□ 0.04
PTCH1-215ENST00000547672 ZBTB21Q9ULJ3 1066 aa15.32■□□□□ 0.04
PTCH1-215ENST00000547672 HPSEQ9Y251 543 aa15.32■□□□□ 0.04
PTCH1-215ENST00000547672 FAM196BA6NMK8 535 aa15.31■□□□□ 0.04
PTCH1-215ENST00000547672 LONP1P36776 959 aaKnown RBP15.31■□□□□ 0.04
PTCH1-215ENST00000547672 PRPHP41219 470 aa15.31■□□□□ 0.04
PTCH1-215ENST00000547672 ATP2C1P98194 919 aaPredicted RBP15.31■□□□□ 0.04
PTCH1-215ENST00000547672 IKQ13123 557 aaPredicted RBP15.31■□□□□ 0.04
PTCH1-215ENST00000547672 STX1AQ16623 288 aa15.31■□□□□ 0.04
PTCH1-215ENST00000547672 FUCA2Q9BTY2 467 aa15.31■□□□□ 0.04
PTCH1-215ENST00000547672 AMNQ9BXJ7 453 aa15.31■□□□□ 0.04
PTCH1-215ENST00000547672 GOLPH3LQ9H4A5 285 aa15.31■□□□□ 0.04
PTCH1-215ENST00000547672 SIPA1L1O43166 1804 aa15.31■□□□□ 0.04
PTCH1-215ENST00000547672 NDUFB10O96000 172 aa15.3■□□□□ 0.04
PTCH1-215ENST00000547672 FOSP01100 380 aaPredicted RBP15.3■□□□□ 0.04
PTCH1-215ENST00000547672 LMOD1P29536 600 aaPredicted RBP15.3■□□□□ 0.04
PTCH1-215ENST00000547672 PTGDRQ13258 359 aa15.3■□□□□ 0.04
PTCH1-215ENST00000547672 ZNF174Q15697 407 aa15.3■□□□□ 0.04
PTCH1-215ENST00000547672 SUPT20HL1Q3ZLR7 823 aa15.3■□□□□ 0.04
PTCH1-215ENST00000547672 SYDE2Q5VT97 1194 aa15.3■□□□□ 0.04
PTCH1-215ENST00000547672 SHC4Q6S5L8 630 aa15.3■□□□□ 0.04
PTCH1-215ENST00000547672 DTHD1Q6ZMT9 781 aa15.3■□□□□ 0.04
PTCH1-215ENST00000547672 KCTD1Q719H9 257 aa15.3■□□□□ 0.04
PTCH1-215ENST00000547672 NEK8Q86SG6 692 aa15.3■□□□□ 0.04
PTCH1-215ENST00000547672 SIAH1Q8IUQ4 282 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms