RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 CNPY2Q9Y2B0 182 aa15.43■□□□□ 0.06
SCAF11-208ENST00000546534 MUC3AQ02505 3323 aa15.43■□□□□ 0.06
SCAF11-208ENST00000546534 SYNRGQ9UMZ2 1314 aa15.43■□□□□ 0.06
SCAF11-208ENST00000546534 MOXD2PA6NHM9 499 aa15.42■□□□□ 0.06
SCAF11-208ENST00000546534 PDE6AP16499 860 aa15.42■□□□□ 0.06
SCAF11-208ENST00000546534 STAT3P40763 770 aa15.42■□□□□ 0.06
SCAF11-208ENST00000546534 PPIGQ13427 754 aaKnown RBP eCLIP15.42■□□□□ 0.062e-7■□□□□ 9.1
SCAF11-208ENST00000546534 KCNA10Q16322 511 aa15.42■□□□□ 0.06
SCAF11-208ENST00000546534 SLC9C2Q5TAH2 1124 aa15.42■□□□□ 0.06
SCAF11-208ENST00000546534 RASIP1Q5U651 963 aa15.42■□□□□ 0.06
SCAF11-208ENST00000546534 CCSAPQ6IQ19 270 aaPredicted RBP15.42■□□□□ 0.06
SCAF11-208ENST00000546534 MFSD5Q6N075 450 aa15.42■□□□□ 0.06
SCAF11-208ENST00000546534 CCDC129Q6ZRS4 1044 aa15.42■□□□□ 0.06
SCAF11-208ENST00000546534 KLHDC9Q8NEP7 349 aa15.42■□□□□ 0.06
SCAF11-208ENST00000546534 ADAMTS19Q8TE59 1207 aa15.42■□□□□ 0.06
SCAF11-208ENST00000546534 THEGQ9P2T0 379 aa15.42■□□□□ 0.06
SCAF11-208ENST00000546534 SWAP70Q9UH65 585 aa15.42■□□□□ 0.06
SCAF11-208ENST00000546534 MYADML2A6NDP7 307 aa15.41■□□□□ 0.06
SCAF11-208ENST00000546534 VWA5AO00534 786 aa15.41■□□□□ 0.06
SCAF11-208ENST00000546534 CSF2RAP15509 400 aa15.41■□□□□ 0.06
SCAF11-208ENST00000546534 IRX5P78411 483 aaPredicted RBP15.41■□□□□ 0.06
SCAF11-208ENST00000546534 ADGRE1Q14246 886 aa15.41■□□□□ 0.06
SCAF11-208ENST00000546534 CCDC85BQ15834 202 aaPredicted RBP15.41■□□□□ 0.06
SCAF11-208ENST00000546534 AACSQ86V21 672 aa15.41■□□□□ 0.06
SCAF11-208ENST00000546534 LCORLQ8N3X6 602 aa15.41■□□□□ 0.06
SCAF11-208ENST00000546534 ZNF214Q9UL59 606 aaPredicted RBP15.41■□□□□ 0.06
SCAF11-208ENST00000546534 FAM184BQ9ULE4 1060 aa15.41■□□□□ 0.06
SCAF11-208ENST00000546534 PCDHB8Q9UN66 801 aa15.41■□□□□ 0.06
SCAF11-208ENST00000546534 NAV1Q8NEY1 1877 aa15.41■□□□□ 0.06
SCAF11-208ENST00000546534 ZNF532Q9HCE3 1301 aa15.41■□□□□ 0.06
SCAF11-208ENST00000546534 SMIM22K7EJ46 135 aa15.4■□□□□ 0.06
SCAF11-208ENST00000546534 SNAI1O95863 264 aaPredicted RBP15.4■□□□□ 0.06
SCAF11-208ENST00000546534 CDK7P50613 346 aa15.4■□□□□ 0.06
SCAF11-208ENST00000546534 CLCN6P51797 869 aa15.4■□□□□ 0.06
SCAF11-208ENST00000546534 MRPS5P82675 430 aaKnown RBP15.4■□□□□ 0.06
SCAF11-208ENST00000546534 TTF1Q15361 905 aaPredicted RBP15.4■□□□□ 0.06
SCAF11-208ENST00000546534 ZNF365Q70YC5 407 aa15.4■□□□□ 0.06
SCAF11-208ENST00000546534 REPS2Q8NFH8 660 aa15.4■□□□□ 0.06
SCAF11-208ENST00000546534 PPP1R9AQ9ULJ8 1098 aa15.4■□□□□ 0.06
SCAF11-208ENST00000546534 ZNFX1Q9P2E3 1918 aaKnown RBP15.4■□□□□ 0.06
SCAF11-208ENST00000546534 ELP1O95163 1332 aa15.4■□□□□ 0.06
SCAF11-208ENST00000546534 TCRBV5S4A2TA0A5A2 114 aa15.39■□□□□ 0.05
SCAF11-208ENST00000546534 PRKAB2O43741 272 aa15.39■□□□□ 0.05
SCAF11-208ENST00000546534 ACRP10323 421 aa15.39■□□□□ 0.05
SCAF11-208ENST00000546534 EEF2P13639 858 aaKnown RBP15.39■□□□□ 0.05
SCAF11-208ENST00000546534 ZKSCAN2Q63HK3 967 aa15.39■□□□□ 0.05
SCAF11-208ENST00000546534 CCDC174Q6PII3 467 aa15.39■□□□□ 0.05
SCAF11-208ENST00000546534 TMEM199Q8N511 208 aa15.39■□□□□ 0.05
SCAF11-208ENST00000546534 CCDC17Q96LX7 622 aa15.39■□□□□ 0.05
SCAF11-208ENST00000546534 GLT1D1Q96MS3 346 aa15.39■□□□□ 0.05
SCAF11-208ENST00000546534 UHRF1Q96T88 793 aaPredicted RBP15.39■□□□□ 0.05
SCAF11-208ENST00000546534 ARMT1Q9H993 441 aa15.39■□□□□ 0.05
SCAF11-208ENST00000546534 MROH7Q68CQ1 1323 aa15.39■□□□□ 0.05
SCAF11-208ENST00000546534 PARP14Q460N5 1801 aa15.38■□□□□ 0.05
SCAF11-208ENST00000546534 CYP2D7A0A087X1C5 515 aa15.38■□□□□ 0.05
SCAF11-208ENST00000546534 DUSP11O75319 330 aaKnown RBP15.38■□□□□ 0.05
SCAF11-208ENST00000546534 IGFBP4P22692 258 aa15.38■□□□□ 0.05
SCAF11-208ENST00000546534 COPB2P35606 906 aa15.38■□□□□ 0.05
SCAF11-208ENST00000546534 PLA2G5P39877 138 aa15.38■□□□□ 0.05
SCAF11-208ENST00000546534 CDK8P49336 464 aa15.38■□□□□ 0.05
SCAF11-208ENST00000546534 FAM83BQ5T0W9 1011 aa15.38■□□□□ 0.05
SCAF11-208ENST00000546534 MSL3Q8N5Y2 521 aaKnown RBP15.38■□□□□ 0.05
SCAF11-208ENST00000546534 PPP1R12CQ9BZL4 782 aa15.38■□□□□ 0.05
SCAF11-208ENST00000546534 ZHX1Q9UKY1 873 aaPredicted RBP15.38■□□□□ 0.05
SCAF11-208ENST00000546534 EXOC6BQ9Y2D4 811 aa15.38■□□□□ 0.05
SCAF11-208ENST00000546534 SYNGAP1Q96PV0 1343 aa15.38■□□□□ 0.05
SCAF11-208ENST00000546534 ARVCFO00192 962 aa15.37■□□□□ 0.05
SCAF11-208ENST00000546534 GOLIM4O00461 696 aa15.37■□□□□ 0.05
SCAF11-208ENST00000546534 ADCY6O43306 1168 aa15.37■□□□□ 0.05
SCAF11-208ENST00000546534 RAD21O60216 631 aa15.37■□□□□ 0.05
SCAF11-208ENST00000546534 ASGR1P07306 291 aa15.37■□□□□ 0.05
SCAF11-208ENST00000546534 C6orf222P0C671 652 aaPredicted RBP15.37■□□□□ 0.05
SCAF11-208ENST00000546534 CST5P28325 142 aaPredicted RBP15.37■□□□□ 0.05
SCAF11-208ENST00000546534 PSRC1Q6PGN9 363 aaPredicted RBP15.37■□□□□ 0.05
SCAF11-208ENST00000546534 MAMDC4Q6UXC1 1216 aa15.37■□□□□ 0.05
SCAF11-208ENST00000546534 HS6ST3Q8IZP7 471 aa15.37■□□□□ 0.05
SCAF11-208ENST00000546534 VTI1AQ96AJ9 217 aa15.37■□□□□ 0.05
SCAF11-208ENST00000546534 DDX11Q96FC9 970 aa15.37■□□□□ 0.05
SCAF11-208ENST00000546534 KANSL2Q9H9L4 492 aa15.37■□□□□ 0.05
SCAF11-208ENST00000546534 IL1RAPL2Q9NP60 686 aa15.37■□□□□ 0.05
SCAF11-208ENST00000546534 MSRAQ9UJ68 235 aa15.37■□□□□ 0.05
SCAF11-208ENST00000546534 COL11A1P12107 1806 aaPredicted RBP15.37■□□□□ 0.05
SCAF11-208ENST00000546534 PLXNA1Q9UIW2 1896 aa15.37■□□□□ 0.05
SCAF11-208ENST00000546534 DNAJC25-GNG10A0A024R161 153 aa15.36■□□□□ 0.05
SCAF11-208ENST00000546534 A0A0U1RQG5 324 aaPredicted RBP15.36■□□□□ 0.05
SCAF11-208ENST00000546534 APBB1O00213 710 aa15.36■□□□□ 0.05
SCAF11-208ENST00000546534 RAB30Q15771 203 aa15.36■□□□□ 0.05
SCAF11-208ENST00000546534 SLFNL1Q499Z3 407 aa15.36■□□□□ 0.05
SCAF11-208ENST00000546534 C12orf60Q5U649 245 aa15.36■□□□□ 0.05
SCAF11-208ENST00000546534 ERC1Q8IUD2 1116 aa15.36■□□□□ 0.05
SCAF11-208ENST00000546534 FAM126BQ8IXS8 530 aa15.36■□□□□ 0.05
SCAF11-208ENST00000546534 PCSK9Q8NBP7 692 aaKnown RBP15.36■□□□□ 0.05
SCAF11-208ENST00000546534 FAM122AQ96E09 287 aa15.36■□□□□ 0.05
SCAF11-208ENST00000546534 DNAJC2Q99543 621 aaKnown RBP15.36■□□□□ 0.05
SCAF11-208ENST00000546534 TEX13BQ9BXU2 312 aa15.36■□□□□ 0.05
SCAF11-208ENST00000546534 NKX2-4Q9H2Z4 354 aa15.36■□□□□ 0.05
SCAF11-208ENST00000546534 GOPCQ9HD26 462 aa15.36■□□□□ 0.05
SCAF11-208ENST00000546534 ATP8A2Q9NTI2 1148 aa15.36■□□□□ 0.05
SCAF11-208ENST00000546534 CXXC1Q9P0U4 656 aaPredicted RBP15.36■□□□□ 0.05
SCAF11-208ENST00000546534 RIPK3Q9Y572 518 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms