RNA–Protein interactions for RNA: ENST00000524481.5

PTPRK-216, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 3,157 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-216ENST00000524481 NLRP12P59046 1061 aa13.36□□□□□ -0.27
PTPRK-216ENST00000524481 USP17L24Q0WX57 530 aa13.36□□□□□ -0.27
PTPRK-216ENST00000524481 CCDC144BQ3MJ40 725 aa13.36□□□□□ -0.27
PTPRK-216ENST00000524481 USP17L6PQ6QN14 398 aa13.36□□□□□ -0.27
PTPRK-216ENST00000524481 DHX40Q8IX18 779 aaKnown RBP13.36□□□□□ -0.27
PTPRK-216ENST00000524481 UBE2Q2Q8WVN8 375 aa13.36□□□□□ -0.27
PTPRK-216ENST00000524481 STRIP1Q5VSL9 837 aa13.36□□□□□ -0.27
PTPRK-216ENST00000524481 C15orf52Q6ZUT6 534 aaKnown RBP13.36□□□□□ -0.27
PTPRK-216ENST00000524481 TBCKQ8TEA7 893 aa13.36□□□□□ -0.27
PTPRK-216ENST00000524481 C16orf45Q96MC5 204 aaPredicted RBP13.36□□□□□ -0.27
PTPRK-216ENST00000524481 PCNTO95613 3336 aa13.36□□□□□ -0.27
PTPRK-216ENST00000524481 LRP5O75197 1615 aa13.36□□□□□ -0.27
PTPRK-216ENST00000524481 BRWD3Q6RI45 1802 aa13.36□□□□□ -0.27
PTPRK-216ENST00000524481 CCDC34Q96HJ3 373 aa13.36□□□□□ -0.27
PTPRK-216ENST00000524481 MTA3Q9BTC8 594 aa13.36□□□□□ -0.27
PTPRK-216ENST00000524481 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.36□□□□□ -0.27
PTPRK-216ENST00000524481 TXLNAP40222 546 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 STAT6P42226 847 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 UBASH3AP57075 661 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 ICA1Q05084 483 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 RAD51AP2Q09MP3 1159 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 FCHSD1Q86WN1 690 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 FAM177A1Q8N128 213 aaPredicted RBP13.35□□□□□ -0.27
PTPRK-216ENST00000524481 CCDC148Q8NFR7 591 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 JDP2Q8WYK2 163 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.35□□□□□ -0.27
PTPRK-216ENST00000524481 PI4KBQ9UBF8 816 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 SHMT1P34896 483 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 NOLC1Q14978 699 aaKnown RBP eCLIP13.35□□□□□ -0.273e-6■■■□□ 16.8
PTPRK-216ENST00000524481 ABCB5Q2M3G0 1257 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 SLFN13Q68D06 897 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 ADGRF4Q8IZF3 695 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 REXO1Q8N1G1 1221 aaKnown RBP13.35□□□□□ -0.27
PTPRK-216ENST00000524481 TMEM39BQ9GZU3 492 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 ZHX3Q9H4I2 956 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 PCDHA6Q9UN73 950 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 FZD1Q9UP38 647 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 PCDHA8Q9Y5H6 950 aa13.35□□□□□ -0.27
PTPRK-216ENST00000524481 PALM3A6NDB9 673 aaPredicted RBP13.34□□□□□ -0.27
PTPRK-216ENST00000524481 HMGB2P26583 209 aaKnown RBP13.34□□□□□ -0.27
PTPRK-216ENST00000524481 NPY5RQ15761 445 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 CCDC178Q5BJE1 867 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 FAM163AQ96GL9 167 aaPredicted RBP13.34□□□□□ -0.27
PTPRK-216ENST00000524481 FAM198AQ9UFP1 575 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 GAKO14976 1311 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 TMEM232C9JQI7 657 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 UBXN2AP68543 259 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 RRAGBQ5VZM2 374 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 CACTINQ8WUQ7 758 aaKnown RBP13.34□□□□□ -0.27
PTPRK-216ENST00000524481 POLD4Q9HCU8 107 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 BARHL2Q9NY43 387 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 NFE2L3Q9Y4A8 694 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 STXBP3O00186 592 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 GNA11P29992 359 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 CCDC93Q567U6 631 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 NIM1KQ8IY84 436 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 TSC1Q92574 1164 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 TMX1Q9H3N1 280 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 MAN1B1Q9UKM7 699 aa13.34□□□□□ -0.27
PTPRK-216ENST00000524481 C4AP0C0L4 1744 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 IDEP14735 1019 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 ECE1P42892 770 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 RBM10P98175 930 aaKnown RBP13.33□□□□□ -0.28
PTPRK-216ENST00000524481 NONOQ15233 471 aaKnown RBP eCLIP13.33□□□□□ -0.28
PTPRK-216ENST00000524481 NBPF9Q3BBW0 867 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 CCDC174Q6PII3 467 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 HHIPL2Q6UWX4 724 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 RBM43Q6ZSC3 357 aaKnown RBP13.33□□□□□ -0.28
PTPRK-216ENST00000524481 SAMSN1Q9NSI8 373 aaKnown RBP13.33□□□□□ -0.28
PTPRK-216ENST00000524481 PCDHA1Q9Y5I3 950 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 SBF2Q86WG5 1849 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 SMTNL1A8MU46 457 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 HOXA13P31271 388 aaPredicted RBP13.33□□□□□ -0.28
PTPRK-216ENST00000524481 FANCCQ00597 558 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 STYK1Q6J9G0 422 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 GPIHBP1Q8IV16 184 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 DPF2Q92785 391 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 KCNF1Q9H3M0 494 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 TCP11L1Q9NUJ3 509 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 LAMB2P55268 1798 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 BCORQ6W2J9 1755 aa13.33□□□□□ -0.28
PTPRK-216ENST00000524481 F5H6K3 240 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 TDP2O95551 362 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 KLRC3Q07444 240 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 SLC30A10Q6XR72 485 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 SH3BP5LQ7L8J4 393 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 IQUBQ8NA54 791 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 KIFC2Q96AC6 838 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 CDK5RAP3Q96JB5 506 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 FEZ1Q99689 392 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 HDAC9Q9UKV0 1011 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 HPSEQ9Y251 543 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 TAF1LQ8IZX4 1826 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 SCN7AQ01118 1682 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 BMP6P22004 513 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 RCAN1P53805 252 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 CUL4BQ13620 913 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 IL17AQ16552 155 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 CC2D2BQ6DHV5 1058 aa13.32□□□□□ -0.28
PTPRK-216ENST00000524481 DYMQ7RTS9 669 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms