RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 SNRNP48Q6IEG0 339 aaKnown RBP19.19■□□□□ 0.66
LSM1-205ENST00000523511 DCAF4Q8WV16 495 aa19.19■□□□□ 0.66
LSM1-205ENST00000523511 DDX11Q96FC9 970 aa19.19■□□□□ 0.66
LSM1-205ENST00000523511 KRT23Q9C075 422 aa19.19■□□□□ 0.66
LSM1-205ENST00000523511 CRISPLD2Q9H0B8 497 aa19.19■□□□□ 0.66
LSM1-205ENST00000523511 MGAMO43451 1857 aa19.18■□□□□ 0.66
LSM1-205ENST00000523511 NEFLP07196 543 aa19.18■□□□□ 0.66
LSM1-205ENST00000523511 NOVP48745 357 aa19.18■□□□□ 0.66
LSM1-205ENST00000523511 SLC4A3P48751 1232 aa19.18■□□□□ 0.66
LSM1-205ENST00000523511 TRDNQ13061 729 aa19.18■□□□□ 0.66
LSM1-205ENST00000523511 CCL14Q16627 93 aa19.18■□□□□ 0.66
LSM1-205ENST00000523511 DGKHQ86XP1 1220 aa19.18■□□□□ 0.66
LSM1-205ENST00000523511 CPXCR1Q8N123 301 aa19.18■□□□□ 0.66
LSM1-205ENST00000523511 DPF3Q92784 378 aa19.18■□□□□ 0.66
LSM1-205ENST00000523511 SLC38A10Q9HBR0 1119 aa19.18■□□□□ 0.66
LSM1-205ENST00000523511 ZNF214Q9UL59 606 aaPredicted RBP19.18■□□□□ 0.66
LSM1-205ENST00000523511 DIS3Q9Y2L1 958 aaKnown RBP19.18■□□□□ 0.66
LSM1-205ENST00000523511 CHMLP26374 656 aa19.17■□□□□ 0.66
LSM1-205ENST00000523511 CNGA1P29973 690 aa19.17■□□□□ 0.66
LSM1-205ENST00000523511 TRIM32Q13049 653 aa19.17■□□□□ 0.66
LSM1-205ENST00000523511 KIAA1211Q6ZU35 1233 aa19.17■□□□□ 0.66
LSM1-205ENST00000523511 NECAB2Q7Z6G3 386 aa19.17■□□□□ 0.66
LSM1-205ENST00000523511 CHST13Q8NET6 341 aa19.17■□□□□ 0.66
LSM1-205ENST00000523511 PNMA2Q9UL42 364 aa19.17■□□□□ 0.66
LSM1-205ENST00000523511 U3KPZ7 1027 aaPredicted RBP19.17■□□□□ 0.66
LSM1-205ENST00000523511 MYH8P13535 1937 aa19.17■□□□□ 0.66
LSM1-205ENST00000523511 NMT2O60551 498 aa19.16■□□□□ 0.66
LSM1-205ENST00000523511 CCDC96Q2M329 555 aa19.16■□□□□ 0.66
LSM1-205ENST00000523511 REPS2Q8NFH8 660 aa19.16■□□□□ 0.66
LSM1-205ENST00000523511 NPLOC4Q8TAT6 608 aa19.16■□□□□ 0.66
LSM1-205ENST00000523511 SHISA4Q96DD7 197 aa19.16■□□□□ 0.66
LSM1-205ENST00000523511 TMEM47Q9BQJ4 181 aa19.16■□□□□ 0.66
LSM1-205ENST00000523511 NR2E3Q9Y5X4 410 aa19.16■□□□□ 0.66
LSM1-205ENST00000523511 HTTP42858 3142 aa19.16■□□□□ 0.66
LSM1-205ENST00000523511 TKFCQ3LXA3 575 aa19.15■□□□□ 0.66
LSM1-205ENST00000523511 ANKRD35Q8N283 1001 aa19.15■□□□□ 0.66
LSM1-205ENST00000523511 NBPF3Q9H094 633 aa19.15■□□□□ 0.66
LSM1-205ENST00000523511 RAVER2Q9HCJ3 691 aaKnown RBP19.15■□□□□ 0.66
LSM1-205ENST00000523511 OGDHLQ9ULD0 1010 aa19.15■□□□□ 0.66
LSM1-205ENST00000523511 MTMR7Q9Y216 660 aa19.15■□□□□ 0.66
LSM1-205ENST00000523511 COBLO75128 1261 aa19.14■□□□□ 0.65
LSM1-205ENST00000523511 KCTD1Q719H9 257 aa19.14■□□□□ 0.65
LSM1-205ENST00000523511 TBC1D10CQ8IV04 446 aa19.14■□□□□ 0.65
LSM1-205ENST00000523511 MSL3Q8N5Y2 521 aaKnown RBP19.14■□□□□ 0.65
LSM1-205ENST00000523511 MAML3Q96JK9 1138 aa19.14■□□□□ 0.65
LSM1-205ENST00000523511 CCDC136Q96JN2 1154 aa19.14■□□□□ 0.65
LSM1-205ENST00000523511 UBAC1Q9BSL1 405 aa19.14■□□□□ 0.65
LSM1-205ENST00000523511 KAT14Q9H8E8 782 aa19.14■□□□□ 0.65
LSM1-205ENST00000523511 NRBP1Q9UHY1 535 aa19.14■□□□□ 0.65
LSM1-205ENST00000523511 KDM4AO75164 1064 aa19.13■□□□□ 0.65
LSM1-205ENST00000523511 CYP2C19P33261 490 aa19.13■□□□□ 0.65
LSM1-205ENST00000523511 GPATCH4Q5T3I0 446 aaKnown RBP19.13■□□□□ 0.65
LSM1-205ENST00000523511 CASC1Q6TDU7 716 aa19.13■□□□□ 0.65
LSM1-205ENST00000523511 FLRT1Q9NZU1 646 aa19.13■□□□□ 0.65
LSM1-205ENST00000523511 DDX20Q9UHI6 824 aaKnown RBP19.13■□□□□ 0.65
LSM1-205ENST00000523511 TACC3Q9Y6A5 838 aa19.13■□□□□ 0.65
LSM1-205ENST00000523511 RBBP6Q7Z6E9 1792 aaKnown RBP19.12■□□□□ 0.65
LSM1-205ENST00000523511 CCND3P30281 292 aaPredicted RBP19.12■□□□□ 0.65
LSM1-205ENST00000523511 UBE2Q1Q7Z7E8 422 aa19.12■□□□□ 0.65
LSM1-205ENST00000523511 ARRDC4Q8NCT1 418 aa19.12■□□□□ 0.65
LSM1-205ENST00000523511 CHMP4CQ96CF2 233 aa19.12■□□□□ 0.65
LSM1-205ENST00000523511 PAWRQ96IZ0 340 aaKnown RBP19.12■□□□□ 0.65
LSM1-205ENST00000523511 ZSCAN10Q96SZ4 725 aaPredicted RBP19.12■□□□□ 0.65
LSM1-205ENST00000523511 PRR12Q9ULL5 1215 aa19.12■□□□□ 0.65
LSM1-205ENST00000523511 CNPY2Q9Y2B0 182 aa19.12■□□□□ 0.65
LSM1-205ENST00000523511 ERICH2A1L162 156 aa19.11■□□□□ 0.65
LSM1-205ENST00000523511 SGSM2O43147 1006 aa19.11■□□□□ 0.65
LSM1-205ENST00000523511 PGK2P07205 417 aa19.11■□□□□ 0.65
LSM1-205ENST00000523511 ZNF792Q3KQV3 632 aa19.11■□□□□ 0.65
LSM1-205ENST00000523511 BTNL9Q6UXG8 535 aa19.11■□□□□ 0.65
LSM1-205ENST00000523511 TINF2Q9BSI4 451 aa19.11■□□□□ 0.65
LSM1-205ENST00000523511 C11orf49Q9H6J7 331 aa19.11■□□□□ 0.65
LSM1-205ENST00000523511 ACAD9Q9H845 621 aa19.11■□□□□ 0.65
LSM1-205ENST00000523511 ZSWIM5Q9P217 1185 aa19.11■□□□□ 0.65
LSM1-205ENST00000523511 GREB1LQ9C091 1923 aaPredicted RBP19.1■□□□□ 0.65
LSM1-205ENST00000523511 NEDD4P46934 1319 aa19.1■□□□□ 0.65
LSM1-205ENST00000523511 B4E1Z4 1266 aa19.1■□□□□ 0.65
LSM1-205ENST00000523511 SEPT4O43236 478 aa19.1■□□□□ 0.65
LSM1-205ENST00000523511 EVI5O60447 810 aa19.1■□□□□ 0.65
LSM1-205ENST00000523511 SART3Q15020 963 aaKnown RBP19.1■□□□□ 0.65
LSM1-205ENST00000523511 LHX8Q68G74 356 aa19.1■□□□□ 0.65
LSM1-205ENST00000523511 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.1■□□□□ 0.65
LSM1-205ENST00000523511 RALYLQ86SE5 291 aaKnown RBP19.1■□□□□ 0.65
LSM1-205ENST00000523511 ANKS1AQ92625 1134 aa19.1■□□□□ 0.65
LSM1-205ENST00000523511 ZKSCAN3Q9BRR0 538 aa19.1■□□□□ 0.65
LSM1-205ENST00000523511 GPCPD1Q9NPB8 672 aa19.1■□□□□ 0.65
LSM1-205ENST00000523511 RIPK3Q9Y572 518 aa19.1■□□□□ 0.65
LSM1-205ENST00000523511 CENPFP49454 3210 aa19.1■□□□□ 0.65
LSM1-205ENST00000523511 PDHBP11177 359 aa19.09■□□□□ 0.65
LSM1-205ENST00000523511 SYDE2Q5VT97 1194 aa19.09■□□□□ 0.65
LSM1-205ENST00000523511 CCDC174Q6PII3 467 aa19.09■□□□□ 0.65
LSM1-205ENST00000523511 ZNF467Q7Z7K2 595 aaPredicted RBP19.09■□□□□ 0.65
LSM1-205ENST00000523511 PNMA1Q8ND90 353 aa19.09■□□□□ 0.65
LSM1-205ENST00000523511 TRERF1Q96PN7 1200 aa19.09■□□□□ 0.65
LSM1-205ENST00000523511 CCPG1Q9ULG6 757 aa19.09■□□□□ 0.65
LSM1-205ENST00000523511 PFASO15067 1338 aa19.08■□□□□ 0.65
LSM1-205ENST00000523511 POTEB2H3BUK9 544 aa19.08■□□□□ 0.64
LSM1-205ENST00000523511 IGHA2P01877 340 aa19.08■□□□□ 0.64
LSM1-205ENST00000523511 ICAM1P05362 532 aa19.08■□□□□ 0.64
LSM1-205ENST00000523511 ALAS1P13196 640 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms