RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 KMT2EQ8IZD2 1858 aa4.68□□□□□ -1.66
CPNE3-204ENST00000517862 SPTA1P02549 2419 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 NPHP1O15259 732 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 BNIP3LO60238 219 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 FSTP19883 344 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 MAPK1P28482 360 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 CRKLP46109 303 aaKnown RBP4.67□□□□□ -1.66
CPNE3-204ENST00000517862 SEC13P55735 322 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 RIPPLY3P57055 190 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 PKN1Q16512 942 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 MAP7D1Q3KQU3 841 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 KIAA0319Q5VV43 1072 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 CCDC102BQ68D86 513 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 GLYCTKQ8IVS8 523 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 SUGP1Q8IWZ8 645 aaKnown RBP4.67□□□□□ -1.66
CPNE3-204ENST00000517862 SLC4A9Q96Q91 983 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 HINFPQ9BQA5 517 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 ATG3Q9NT62 314 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 TMOD3Q9NYL9 352 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 GGA3Q9NZ52 723 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 TENM4Q6N022 2769 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 COL3A1P02461 1466 aaPredicted RBP4.67□□□□□ -1.66
CPNE3-204ENST00000517862 PCDH11XQ9BZA7 1347 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 PCDH11YQ9BZA8 1340 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 TECTAO75443 2155 aa4.67□□□□□ -1.66
CPNE3-204ENST00000517862 KDRP35968 1356 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 A0A1B0GTH6 734 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 LZTS3O60299 673 aaPredicted RBP4.66□□□□□ -1.66
CPNE3-204ENST00000517862 MED26O95402 600 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 ERCC3P19447 782 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 NBL1P41271 181 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 LACTBP83111 547 aaPredicted RBP4.66□□□□□ -1.66
CPNE3-204ENST00000517862 PTPN12Q05209 780 aaKnown RBP4.66□□□□□ -1.66
CPNE3-204ENST00000517862 KRTAP19-4Q3LI73 84 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 LARP1BQ659C4 914 aaKnown RBP4.66□□□□□ -1.66
CPNE3-204ENST00000517862 PRR5LQ6MZQ0 368 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 PRR23CQ6ZRP0 262 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 FAM178BQ8IXR5 827 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 TSEN2Q8NCE0 465 aaKnown RBP4.66□□□□□ -1.66
CPNE3-204ENST00000517862 ZNF592Q92610 1267 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 RUNDC1Q96C34 613 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 NDFIP2Q9NV92 336 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 KCNK4Q9NYG8 393 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 SRRDQ9UH36 339 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 PCDHB11Q9Y5F2 797 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 PRRC2BQ5JSZ5 2229 aaKnown RBP4.66□□□□□ -1.66
CPNE3-204ENST00000517862 ZNF831Q5JPB2 1677 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 PLXNA1Q9UIW2 1896 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 MAP3K19Q56UN5 1328 aa4.66□□□□□ -1.66
CPNE3-204ENST00000517862 SBNO2Q9Y2G9 1366 aa4.65□□□□□ -1.66
CPNE3-204ENST00000517862 LTBP2Q14767 1821 aa4.65□□□□□ -1.66
CPNE3-204ENST00000517862 RIC1Q4ADV7 1423 aa4.65□□□□□ -1.66
CPNE3-204ENST00000517862 DMDP11532 3685 aa4.65□□□□□ -1.66
CPNE3-204ENST00000517862 CHD9Q3L8U1 2897 aa4.65□□□□□ -1.66
CPNE3-204ENST00000517862 CD163L1Q9NR16 1453 aa4.65□□□□□ -1.66
CPNE3-204ENST00000517862 BRWD1Q9NSI6 2320 aa4.65□□□□□ -1.66
CPNE3-204ENST00000517862 ERVH48-1M5A8F1 160 aa4.65□□□□□ -1.67
CPNE3-204ENST00000517862 ICMTO60725 284 aa4.65□□□□□ -1.67
CPNE3-204ENST00000517862 STAU1O95793 577 aaKnown RBP4.65□□□□□ -1.67
CPNE3-204ENST00000517862 U2AF1L5P0DN76 240 aaPredicted RBP4.65□□□□□ -1.67
CPNE3-204ENST00000517862 HOXD10P28358 340 aa4.65□□□□□ -1.67
CPNE3-204ENST00000517862 MCCD1P59942 119 aaPredicted RBP4.65□□□□□ -1.67
CPNE3-204ENST00000517862 U2AF1Q01081 240 aaKnown RBP eCLIP4.65□□□□□ -1.67
CPNE3-204ENST00000517862 FKBP5Q13451 457 aaPredicted RBP4.65□□□□□ -1.67
CPNE3-204ENST00000517862 NAA30Q147X3 362 aaPredicted RBP4.65□□□□□ -1.67
CPNE3-204ENST00000517862 TNIP1Q15025 636 aa4.65□□□□□ -1.67
CPNE3-204ENST00000517862 C1orf216Q8TAB5 229 aa4.65□□□□□ -1.67
CPNE3-204ENST00000517862 GTF3C2Q8WUA4 911 aaPredicted RBP4.65□□□□□ -1.67
CPNE3-204ENST00000517862 RNPC3Q96LT9 517 aaKnown RBP4.65□□□□□ -1.67
CPNE3-204ENST00000517862 GRIP2Q9C0E4 1043 aa4.65□□□□□ -1.67
CPNE3-204ENST00000517862 ZFYVE28Q9HCC9 887 aa4.65□□□□□ -1.67
CPNE3-204ENST00000517862 ALG13Q9NP73 1137 aaKnown RBP4.65□□□□□ -1.67
CPNE3-204ENST00000517862 PRKAG2Q9UGJ0 569 aa4.65□□□□□ -1.67
CPNE3-204ENST00000517862 KLF15Q9UIH9 416 aa4.65□□□□□ -1.67
CPNE3-204ENST00000517862 ZNRF3Q9ULT6 936 aa4.65□□□□□ -1.67
CPNE3-204ENST00000517862 TRAK1Q9UPV9 953 aa4.65□□□□□ -1.67
CPNE3-204ENST00000517862 RBM19Q9Y4C8 960 aaKnown RBP4.65□□□□□ -1.67
CPNE3-204ENST00000517862 PCDHGA11Q9Y5H2 935 aa4.65□□□□□ -1.67
CPNE3-204ENST00000517862 LAMB1P07942 1786 aa4.65□□□□□ -1.67
CPNE3-204ENST00000517862 RGPD2P0DJD1 1756 aa4.65□□□□□ -1.67
CPNE3-204ENST00000517862 ELOA3CA0A087WX78 387 aaPredicted RBP4.64□□□□□ -1.67
CPNE3-204ENST00000517862 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.64□□□□□ -1.67
CPNE3-204ENST00000517862 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.64□□□□□ -1.67
CPNE3-204ENST00000517862 PRAMEF22A3QJZ6 481 aa4.64□□□□□ -1.67
CPNE3-204ENST00000517862 ELOA3DA6NLF2 546 aaPredicted RBP4.64□□□□□ -1.67
CPNE3-204ENST00000517862 M0R082 166 aa4.64□□□□□ -1.67
CPNE3-204ENST00000517862 TAF4O00268 1085 aa4.64□□□□□ -1.67
CPNE3-204ENST00000517862 PPIP5K2O43314 1243 aa4.64□□□□□ -1.67
CPNE3-204ENST00000517862 PTCD1O75127 700 aaKnown RBP4.64□□□□□ -1.67
CPNE3-204ENST00000517862 RAD17O75943 681 aa4.64□□□□□ -1.67
CPNE3-204ENST00000517862 WNT11O96014 354 aa4.64□□□□□ -1.67
CPNE3-204ENST00000517862 TCF3P15923 654 aa4.64□□□□□ -1.67
CPNE3-204ENST00000517862 RING1Q06587 406 aa4.64□□□□□ -1.67
CPNE3-204ENST00000517862 TAF1CQ15572 869 aaPredicted RBP4.64□□□□□ -1.67
CPNE3-204ENST00000517862 ECM1Q16610 540 aa4.64□□□□□ -1.67
CPNE3-204ENST00000517862 ELOA3BQ3SY89 546 aa4.64□□□□□ -1.67
CPNE3-204ENST00000517862 SOWAHCQ53LP3 525 aaPredicted RBP4.64□□□□□ -1.67
CPNE3-204ENST00000517862 FRMD5Q7Z6J6 570 aa4.64□□□□□ -1.67
CPNE3-204ENST00000517862 ELOA3Q8NG57 546 aa4.64□□□□□ -1.67
CPNE3-204ENST00000517862 ZNF417Q8TAU3 575 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms