RNA–Protein interactions for RNA: ENST00000513284.5

RNF4-218, Transcript of ring finger protein 4, human

TSL 4

Gene RNF4, Length 517 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-218	ENST00000513284	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.63	□□□□□ -0.23
RNF4-218	ENST00000513284	CD320	Q9NPF0	282 aa		13.63	□□□□□ -0.23
RNF4-218	ENST00000513284	DBNL	Q9UJU6	430 aa	Known RBP	13.63	□□□□□ -0.23
RNF4-218	ENST00000513284	ZNF214	Q9UL59	606 aa	Predicted RBP	13.63	□□□□□ -0.23
RNF4-218	ENST00000513284	FAM184B	Q9ULE4	1060 aa		13.63	□□□□□ -0.23
RNF4-218	ENST00000513284	TNN	Q9UQP3	1299 aa		13.63	□□□□□ -0.23
RNF4-218	ENST00000513284	HCN4	Q9Y3Q4	1203 aa		13.63	□□□□□ -0.23
RNF4-218	ENST00000513284	MTCH2	Q9Y6C9	303 aa		13.63	□□□□□ -0.23
RNF4-218	ENST00000513284	PRRC2B	Q5JSZ5	2229 aa	Known RBP	13.63	□□□□□ -0.23
RNF4-218	ENST00000513284	PIEZO1	Q92508	2521 aa		13.62	□□□□□ -0.23
RNF4-218	ENST00000513284	COL11A1	P12107	1806 aa	Predicted RBP	13.62	□□□□□ -0.23
RNF4-218	ENST00000513284	DNAJC25-GNG10	A0A024R161	153 aa		13.62	□□□□□ -0.23
RNF4-218	ENST00000513284	VWA5A	O00534	786 aa		13.62	□□□□□ -0.23
RNF4-218	ENST00000513284	CYP2D6	P10635	497 aa		13.62	□□□□□ -0.23
RNF4-218	ENST00000513284	STAT3	P40763	770 aa		13.62	□□□□□ -0.23
RNF4-218	ENST00000513284	KCTD2	Q14681	263 aa		13.62	□□□□□ -0.23
RNF4-218	ENST00000513284	MAMDC4	Q6UXC1	1216 aa		13.62	□□□□□ -0.23
RNF4-218	ENST00000513284	SLC43A3	Q8NBI5	491 aa		13.62	□□□□□ -0.23
RNF4-218	ENST00000513284	DYNLL2	Q96FJ2	89 aa		13.62	□□□□□ -0.23
RNF4-218	ENST00000513284	GLT1D1	Q96MS3	346 aa		13.62	□□□□□ -0.23
RNF4-218	ENST00000513284	UPF3A	Q9H1J1	476 aa	Known RBP	13.62	□□□□□ -0.23
RNF4-218	ENST00000513284	VCPKMT	Q9H867	229 aa		13.62	□□□□□ -0.23
RNF4-218	ENST00000513284	RIPK3	Q9Y572	518 aa		13.62	□□□□□ -0.23
RNF4-218	ENST00000513284	GRIN2D	O15399	1336 aa		13.62	□□□□□ -0.23
RNF4-218	ENST00000513284	MROH7	Q68CQ1	1323 aa		13.62	□□□□□ -0.23
RNF4-218	ENST00000513284	FAM86C2P	A6NEL3	165 aa		13.61	□□□□□ -0.23
RNF4-218	ENST00000513284	EPOP	A6NHQ4	379 aa		13.61	□□□□□ -0.23
RNF4-218	ENST00000513284	POLR3D	P05423	398 aa	Predicted RBP	13.61	□□□□□ -0.23
RNF4-218	ENST00000513284	AKR1B1	P15121	316 aa		13.61	□□□□□ -0.23
RNF4-218	ENST00000513284	GJA9	P57773	515 aa		13.61	□□□□□ -0.23
RNF4-218	ENST00000513284	POLA2	Q14181	598 aa		13.61	□□□□□ -0.23
RNF4-218	ENST00000513284	AAK1	Q2M2I8	961 aa		13.61	□□□□□ -0.23
RNF4-218	ENST00000513284	TMEM179	Q6ZVK1	233 aa		13.61	□□□□□ -0.23
RNF4-218	ENST00000513284	VTI1A	Q96AJ9	217 aa		13.61	□□□□□ -0.23
RNF4-218	ENST00000513284	FGD4	Q96M96	766 aa		13.61	□□□□□ -0.23
RNF4-218	ENST00000513284	CCDC8	Q9H0W5	538 aa	Predicted RBP	13.61	□□□□□ -0.23
RNF4-218	ENST00000513284	CNPY2	Q9Y2B0	182 aa		13.61	□□□□□ -0.23
RNF4-218	ENST00000513284	MUC6	Q6W4X9	2439 aa		13.6	□□□□□ -0.23
RNF4-218	ENST00000513284		A0A0U1RQG5	324 aa	Predicted RBP	13.6	□□□□□ -0.23
RNF4-218	ENST00000513284	WDR46	O15213	610 aa	Known RBP	13.6	□□□□□ -0.23
RNF4-218	ENST00000513284	GNAI2	P04899	355 aa		13.6	□□□□□ -0.23
RNF4-218	ENST00000513284	C6orf222	P0C671	652 aa	Predicted RBP	13.6	□□□□□ -0.23
RNF4-218	ENST00000513284	NKX3-2	P78367	333 aa		13.6	□□□□□ -0.23
RNF4-218	ENST00000513284	ACVR2B	Q13705	512 aa		13.6	□□□□□ -0.23
RNF4-218	ENST00000513284	GNAS	Q5JWF2	1037 aa		13.6	□□□□□ -0.23
RNF4-218	ENST00000513284	CERS3	Q8IU89	383 aa		13.6	□□□□□ -0.23
RNF4-218	ENST00000513284	MSL3	Q8N5Y2	521 aa	Known RBP	13.6	□□□□□ -0.23
RNF4-218	ENST00000513284	PCSK9	Q8NBP7	692 aa	Known RBP	13.6	□□□□□ -0.23
RNF4-218	ENST00000513284	EAF2	Q96CJ1	260 aa	Predicted RBP	13.6	□□□□□ -0.23
RNF4-218	ENST00000513284	WNT8A	Q9H1J5	351 aa		13.6	□□□□□ -0.23
RNF4-218	ENST00000513284	PI4K2B	G5E9Z4	385 aa		13.59	□□□□□ -0.23
RNF4-218	ENST00000513284	ARHGEF15	O94989	841 aa		13.59	□□□□□ -0.23
RNF4-218	ENST00000513284	CCL23	P55773	120 aa		13.59	□□□□□ -0.23
RNF4-218	ENST00000513284	CCDC144B	Q3MJ40	725 aa		13.59	□□□□□ -0.23
RNF4-218	ENST00000513284	PPP2R2D	Q66LE6	453 aa		13.59	□□□□□ -0.23
RNF4-218	ENST00000513284	ARHGAP45	Q92619	1136 aa		13.59	□□□□□ -0.23
RNF4-218	ENST00000513284	KATNBL1	Q9H079	304 aa		13.59	□□□□□ -0.23
RNF4-218	ENST00000513284	CERS4	Q9HA82	394 aa		13.59	□□□□□ -0.23
RNF4-218	ENST00000513284	MCM9	Q9NXL9	1143 aa		13.59	□□□□□ -0.23
RNF4-218	ENST00000513284	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.59	□□□□□ -0.23
RNF4-218	ENST00000513284	PPP1R9A	Q9ULJ8	1098 aa		13.59	□□□□□ -0.23
RNF4-218	ENST00000513284	PCDHA11	Q9Y5I1	949 aa		13.59	□□□□□ -0.23
RNF4-218	ENST00000513284	WDFY4	Q6ZS81	3184 aa		13.59	□□□□□ -0.23
RNF4-218	ENST00000513284	ASTN1	O14525	1302 aa		13.59	□□□□□ -0.23
RNF4-218	ENST00000513284	APBB1	O00213	710 aa		13.58	□□□□□ -0.24
RNF4-218	ENST00000513284	PTGS1	P23219	599 aa		13.58	□□□□□ -0.24
RNF4-218	ENST00000513284	RARS	P54136	660 aa	Known RBP	13.58	□□□□□ -0.24
RNF4-218	ENST00000513284	BEX3	Q00994	111 aa		13.58	□□□□□ -0.24
RNF4-218	ENST00000513284	SKIV2L	Q15477	1246 aa	Known RBP	13.58	□□□□□ -0.24
RNF4-218	ENST00000513284	SSH3	Q8TE77	659 aa		13.58	□□□□□ -0.24
RNF4-218	ENST00000513284	SDR42E1	Q8WUS8	393 aa		13.58	□□□□□ -0.24
RNF4-218	ENST00000513284	AGBL1	Q96MI9	1066 aa		13.58	□□□□□ -0.24
RNF4-218	ENST00000513284	NOC4L	Q9BVI4	516 aa	Known RBP	13.58	□□□□□ -0.24
RNF4-218	ENST00000513284	TRPV6	Q9H1D0	765 aa		13.58	□□□□□ -0.24
RNF4-218	ENST00000513284	HIPK3	Q9H422	1215 aa		13.58	□□□□□ -0.24
RNF4-218	ENST00000513284	DCP1A	Q9NPI6	582 aa	Predicted RBP	13.58	□□□□□ -0.24
RNF4-218	ENST00000513284	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.58	□□□□□ -0.24
RNF4-218	ENST00000513284	SLC4A7	Q9Y6M7	1214 aa		13.58	□□□□□ -0.24
RNF4-218	ENST00000513284	MAGEB6P1	A0A0J9YX57	407 aa		13.57	□□□□□ -0.24
RNF4-218	ENST00000513284	BCAR3	O75815	825 aa		13.57	□□□□□ -0.24
RNF4-218	ENST00000513284	EEF2	P13639	858 aa	Known RBP	13.57	□□□□□ -0.24
RNF4-218	ENST00000513284	ICA1	Q05084	483 aa		13.57	□□□□□ -0.24
RNF4-218	ENST00000513284	TTLL4	Q14679	1199 aa		13.57	□□□□□ -0.24
RNF4-218	ENST00000513284	CXCL17	Q6UXB2	119 aa		13.57	□□□□□ -0.24
RNF4-218	ENST00000513284	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.57	□□□□□ -0.24
RNF4-218	ENST00000513284	ARHGEF10L	Q9HCE6	1279 aa		13.57	□□□□□ -0.24
RNF4-218	ENST00000513284	COG5	Q9UP83	839 aa		13.57	□□□□□ -0.24
RNF4-218	ENST00000513284	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	13.56	□□□□□ -0.24
RNF4-218	ENST00000513284	TLR3	O15455	904 aa	Known RBP	13.56	□□□□□ -0.24
RNF4-218	ENST00000513284	SURF6	O75683	361 aa	Known RBP	13.56	□□□□□ -0.24
RNF4-218	ENST00000513284	ATP8B2	P98198	1209 aa		13.56	□□□□□ -0.24
RNF4-218	ENST00000513284	FAM83B	Q5T0W9	1011 aa		13.56	□□□□□ -0.24
RNF4-218	ENST00000513284	SPRED2	Q7Z698	418 aa		13.56	□□□□□ -0.24
RNF4-218	ENST00000513284	DDX11	Q96FC9	970 aa		13.56	□□□□□ -0.24
RNF4-218	ENST00000513284	SCLY	Q96I15	445 aa		13.56	□□□□□ -0.24
RNF4-218	ENST00000513284	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
RNF4-218	ENST00000513284	MTIF3	Q9H2K0	278 aa	Known RBP	13.56	□□□□□ -0.24
RNF4-218	ENST00000513284	ABHD16B	Q9H3Z7	469 aa		13.56	□□□□□ -0.24
RNF4-218	ENST00000513284	NOP58	Q9Y2X3	529 aa	Known RBP	13.56	□□□□□ -0.24
RNF4-218	ENST00000513284	CYP2D7	A0A087X1C5	515 aa		13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms