RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 TOPBP1Q92547 1522 aa11.44□□□□□ -0.58
USP53-206ENST00000510737 TARBP1Q13395 1621 aaKnown RBP11.43□□□□□ -0.58
USP53-206ENST00000510737 ERCC3P19447 782 aa11.43□□□□□ -0.58
USP53-206ENST00000510737 RNF4P78317 190 aa11.43□□□□□ -0.58
USP53-206ENST00000510737 MAP6Q96JE9 813 aa11.43□□□□□ -0.58
USP53-206ENST00000510737 HHIPL1Q96JK4 782 aa11.43□□□□□ -0.58
USP53-206ENST00000510737 PRDM14Q9GZV8 571 aa11.43□□□□□ -0.58
USP53-206ENST00000510737 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.43□□□□□ -0.58
USP53-206ENST00000510737 ASCC2Q9H1I8 757 aaPredicted RBP11.43□□□□□ -0.58
USP53-206ENST00000510737 TCFL5Q9UL49 500 aa11.43□□□□□ -0.58
USP53-206ENST00000510737 PRDM2Q13029 1718 aa11.43□□□□□ -0.58
USP53-206ENST00000510737 TEX51A0A1B0GUA7 166 aa11.42□□□□□ -0.58
USP53-206ENST00000510737 PRAMEF1O95521 474 aa11.42□□□□□ -0.58
USP53-206ENST00000510737 SEZ6Q53EL9 994 aa11.42□□□□□ -0.58
USP53-206ENST00000510737 ZNF655Q8N720 491 aaPredicted RBP11.42□□□□□ -0.58
USP53-206ENST00000510737 FKTNO75072 461 aa11.41□□□□□ -0.58
USP53-206ENST00000510737 SEMA7AO75326 666 aa11.41□□□□□ -0.58
USP53-206ENST00000510737 INHBBP09529 407 aa11.41□□□□□ -0.58
USP53-206ENST00000510737 MLECQ14165 292 aa11.41□□□□□ -0.58
USP53-206ENST00000510737 TMEM192Q8IY95 271 aa11.41□□□□□ -0.58
USP53-206ENST00000510737 LINC00116Q8NCU8 138 aa11.41□□□□□ -0.58
USP53-206ENST00000510737 GGT7Q9UJ14 662 aa11.41□□□□□ -0.58
USP53-206ENST00000510737 ZMYM5Q9UJ78 669 aa11.41□□□□□ -0.58
USP53-206ENST00000510737 NRDCO43847 1150 aa11.4□□□□□ -0.58
USP53-206ENST00000510737 CHMP4BP1P59074 171 aa11.4□□□□□ -0.58
USP53-206ENST00000510737 GK5Q6ZS86 529 aa11.4□□□□□ -0.58
USP53-206ENST00000510737 NLRC3Q7RTR2 1065 aa11.4□□□□□ -0.58
USP53-206ENST00000510737 PLCD4Q9BRC7 762 aa11.4□□□□□ -0.58
USP53-206ENST00000510737 GAPVD1Q14C86 1478 aa11.39□□□□□ -0.59
USP53-206ENST00000510737 SYPP08247 313 aa11.39□□□□□ -0.59
USP53-206ENST00000510737 SDHBP21912 280 aa11.39□□□□□ -0.59
USP53-206ENST00000510737 CEBPAP49715 358 aaPredicted RBP11.39□□□□□ -0.59
USP53-206ENST00000510737 KIR3DS1Q14943 382 aa11.39□□□□□ -0.59
USP53-206ENST00000510737 ADGRF1Q5T601 910 aa11.39□□□□□ -0.59
USP53-206ENST00000510737 LDLRAD1Q5T700 205 aa11.39□□□□□ -0.59
USP53-206ENST00000510737 SIGLEC6O43699 453 aa11.38□□□□□ -0.59
USP53-206ENST00000510737 PCBP3P57721 371 aaKnown RBP11.38□□□□□ -0.59
USP53-206ENST00000510737 SSPNQ14714 243 aa11.38□□□□□ -0.59
USP53-206ENST00000510737 CEP128Q6ZU80 1094 aa11.38□□□□□ -0.59
USP53-206ENST00000510737 SYNJ1O43426 1573 aa11.37□□□□□ -0.59
USP53-206ENST00000510737 KIF13AQ9H1H9 1805 aa11.37□□□□□ -0.59
USP53-206ENST00000510737 KIR2DL1P43626 348 aaPredicted RBP11.37□□□□□ -0.59
USP53-206ENST00000510737 KIR2DL2P43627 348 aaPredicted RBP11.37□□□□□ -0.59
USP53-206ENST00000510737 GIPC2Q8TF65 315 aa11.37□□□□□ -0.59
USP53-206ENST00000510737 BCL2L13Q9BXK5 485 aa11.37□□□□□ -0.59
USP53-206ENST00000510737 OR14I1A6ND48 311 aa11.36□□□□□ -0.59
USP53-206ENST00000510737 CLEC3AO75596 197 aa11.36□□□□□ -0.59
USP53-206ENST00000510737 NME1P15531 152 aaKnown RBP11.36□□□□□ -0.59
USP53-206ENST00000510737 TMEM132EQ6IEE7 984 aa11.36□□□□□ -0.59
USP53-206ENST00000510737 HS2ST1Q7LGA3 356 aa11.36□□□□□ -0.59
USP53-206ENST00000510737 REXO1Q8N1G1 1221 aaKnown RBP11.36□□□□□ -0.59
USP53-206ENST00000510737 C20orf173Q96LM9 149 aa11.36□□□□□ -0.59
USP53-206ENST00000510737 RAPGEFL1Q9UHV5 662 aa11.36□□□□□ -0.59
USP53-206ENST00000510737 MBD1Q9UIS9 605 aaPredicted RBP11.36□□□□□ -0.59
USP53-206ENST00000510737 TDRD9Q8NDG6 1382 aaKnown RBP11.36□□□□□ -0.59
USP53-206ENST00000510737 CTSKP43235 329 aa11.35□□□□□ -0.59
USP53-206ENST00000510737 ABCC8Q09428 1581 aa11.34□□□□□ -0.59
USP53-206ENST00000510737 DNMBPQ6XZF7 1577 aa11.34□□□□□ -0.59
USP53-206ENST00000510737 MEIS3P2A8K0S8 358 aa11.34□□□□□ -0.59
USP53-206ENST00000510737 RAD51AP2Q09MP3 1159 aa11.34□□□□□ -0.59
USP53-206ENST00000510737 APOBRQ0VD83 1088 aa11.34□□□□□ -0.59
USP53-206ENST00000510737 SLC14A2Q15849 920 aa11.34□□□□□ -0.59
USP53-206ENST00000510737 PANK1Q8TE04 598 aa11.34□□□□□ -0.59
USP53-206ENST00000510737 EAF1Q96JC9 268 aaPredicted RBP11.34□□□□□ -0.59
USP53-206ENST00000510737 SLC9A7Q96T83 725 aa11.34□□□□□ -0.59
USP53-206ENST00000510737 CRTAC1Q9NQ79 661 aa11.34□□□□□ -0.59
USP53-206ENST00000510737 CHST7Q9NS84 486 aa11.34□□□□□ -0.59
USP53-206ENST00000510737 CNOT6Q9ULM6 557 aaKnown RBP11.34□□□□□ -0.59
USP53-206ENST00000510737 KCTD3Q9Y597 815 aa11.34□□□□□ -0.59
USP53-206ENST00000510737 SNAPC4Q5SXM2 1469 aa11.33□□□□□ -0.6
USP53-206ENST00000510737 FADS2P1A8MWK0 482 aa11.33□□□□□ -0.6
USP53-206ENST00000510737 MEIS1O00470 390 aa11.33□□□□□ -0.6
USP53-206ENST00000510737 TNFRSF10CO14798 259 aa11.33□□□□□ -0.6
USP53-206ENST00000510737 HOXA5P20719 270 aa11.33□□□□□ -0.6
USP53-206ENST00000510737 MCM4P33991 863 aa11.33□□□□□ -0.6
USP53-206ENST00000510737 ITGAEP38570 1179 aa11.33□□□□□ -0.6
USP53-206ENST00000510737 CCNFP41002 786 aa11.33□□□□□ -0.6
USP53-206ENST00000510737 EPHB3P54753 998 aa11.33□□□□□ -0.6
USP53-206ENST00000510737 SLITRK4Q8IW52 837 aa11.33□□□□□ -0.6
USP53-206ENST00000510737 SLC6A18Q96N87 628 aa11.33□□□□□ -0.6
USP53-206ENST00000510737 GFOD1Q9NXC2 390 aa11.33□□□□□ -0.6
USP53-206ENST00000510737 SSU72P8A0A1W2PR75 194 aa11.32□□□□□ -0.6
USP53-206ENST00000510737 RTP1P59025 263 aa11.32□□□□□ -0.6
USP53-206ENST00000510737 SRSF3P84103 164 aaKnown RBP11.32□□□□□ -0.6
USP53-206ENST00000510737 NT5C1AQ9BXI3 368 aa11.32□□□□□ -0.6
USP53-206ENST00000510737 KRTAP4-11Q9BYQ6 195 aa11.32□□□□□ -0.6
USP53-206ENST00000510737 GPR55Q9Y2T6 319 aaPredicted RBP11.32□□□□□ -0.6
USP53-206ENST00000510737 ERCC6L2Q5T890 1561 aa11.32□□□□□ -0.6
USP53-206ENST00000510737 ACRP10323 421 aa11.31□□□□□ -0.6
USP53-206ENST00000510737 VIPR1P32241 457 aa11.31□□□□□ -0.6
USP53-206ENST00000510737 FCRL2Q96LA5 508 aaPredicted RBP11.31□□□□□ -0.6
USP53-206ENST00000510737 CNTD2Q9H8S5 307 aa11.31□□□□□ -0.6
USP53-206ENST00000510737 ERVK13-1Q9NX77 482 aa11.31□□□□□ -0.6
USP53-206ENST00000510737 NCANO14594 1321 aa11.31□□□□□ -0.6
USP53-206ENST00000510737 RAD54L2Q9Y4B4 1467 aa11.31□□□□□ -0.6
USP53-206ENST00000510737 PNLIPP16233 465 aa11.3□□□□□ -0.6
USP53-206ENST00000510737 HSF5Q4G112 596 aaPredicted RBP11.3□□□□□ -0.6
USP53-206ENST00000510737 NKD1Q969G9 470 aa11.3□□□□□ -0.6
USP53-206ENST00000510737 MKRN2Q9H000 416 aaKnown RBP11.3□□□□□ -0.6
USP53-206ENST00000510737 EPB41L4AQ9HCS5 686 aaPredicted RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms