RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 AEBP2Q6ZN18 517 aaPredicted RBP45.73■■■■■ 4.91
USP53-206ENST00000510737 CHIC1Q5VXU3 224 aa43.61■■■■■ 4.57
USP53-206ENST00000510737 SENP3Q9H4L4 574 aaPredicted RBP38.73■■■■□ 3.79
USP53-206ENST00000510737 PHF23Q9BUL5 403 aaPredicted RBP38.39■■■■□ 3.74
USP53-206ENST00000510737 FOXD1Q16676 465 aa36.2■■■■□ 3.39
USP53-206ENST00000510737 PLPPR3Q6T4P5 718 aa34.91■■■■□ 3.18
USP53-206ENST00000510737 PPP6R1Q9UPN7 881 aa34.19■■■■□ 3.06
USP53-206ENST00000510737 ADRA2BP18089 450 aa34.05■■■■□ 3.04
USP53-206ENST00000510737 PIAS4Q8N2W9 510 aaPredicted RBP33.82■■■■□ 3
USP53-206ENST00000510737 MSH5O43196 834 aa33.58■■■□□ 2.97
USP53-206ENST00000510737 POTEDQ86YR6 584 aa32.35■■■□□ 2.77
USP53-206ENST00000510737 MAPK8IP2Q13387 824 aaPredicted RBP31.22■■■□□ 2.59
USP53-206ENST00000510737 SCAF1Q9H7N4 1312 aaKnown RBP30.9■■■□□ 2.54
USP53-206ENST00000510737 DMRT2Q9Y5R5 561 aa30.82■■■□□ 2.52
USP53-206ENST00000510737 PPP4R3CPQ6ZMV5 832 aa30.72■■■□□ 2.51
USP53-206ENST00000510737 CNKSR2Q8WXI2 1034 aa30■■■□□ 2.39
USP53-206ENST00000510737 HOXD11P31277 338 aaPredicted RBP29.84■■■□□ 2.37
USP53-206ENST00000510737 RNF216Q9NWF9 866 aaPredicted RBP29.67■■■□□ 2.34
USP53-206ENST00000510737 NCBP3Q53F19 620 aaKnown RBP29.49■■■□□ 2.31
USP53-206ENST00000510737 DCAF8L1A6NGE4 600 aa29.48■■■□□ 2.31
USP53-206ENST00000510737 NPM3O75607 178 aaKnown RBP29.25■■■□□ 2.27
USP53-206ENST00000510737 KCNA4P22459 653 aa29.03■■■□□ 2.24
USP53-206ENST00000510737 RNF39Q9H2S5 420 aa28.79■■■□□ 2.2
USP53-206ENST00000510737 CACNB1Q02641 598 aaPredicted RBP28.64■■■□□ 2.18
USP53-206ENST00000510737 DNAJC5BQ9UF47 199 aa28.64■■■□□ 2.18
USP53-206ENST00000510737 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.35■■■□□ 2.13
USP53-206ENST00000510737 C1QBPQ07021 282 aaKnown RBP28.29■■■□□ 2.12
USP53-206ENST00000510737 U3KPZ7 1027 aaPredicted RBP27.92■■■□□ 2.06
USP53-206ENST00000510737 SLC4A2P04920 1241 aa27.91■■■□□ 2.06
USP53-206ENST00000510737 SPINK5Q9NQ38 1064 aaPredicted RBP27.44■■□□□ 1.98
USP53-206ENST00000510737 SLC4A1APQ9BWU0 796 aaKnown RBP27.37■■□□□ 1.97
USP53-206ENST00000510737 CAPN15O75808 1086 aa27.25■■□□□ 1.95
USP53-206ENST00000510737 DSG3P32926 999 aa27.09■■□□□ 1.93
USP53-206ENST00000510737 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.01■■□□□ 1.91
USP53-206ENST00000510737 HNRNPUL2Q1KMD3 747 aaKnown RBP27.01■■□□□ 1.91
USP53-206ENST00000510737 MYCNP04198 464 aaPredicted RBP26.94■■□□□ 1.9
USP53-206ENST00000510737 SAMD1Q6SPF0 538 aaPredicted RBP26.93■■□□□ 1.9
USP53-206ENST00000510737 TRHP20396 242 aaPredicted RBP26.92■■□□□ 1.9
USP53-206ENST00000510737 APLP2Q06481 763 aa26.88■■□□□ 1.89
USP53-206ENST00000510737 FOXD4L1Q9NU39 408 aa26.87■■□□□ 1.89
USP53-206ENST00000510737 ZNF219Q9P2Y4 722 aaPredicted RBP26.8■■□□□ 1.88
USP53-206ENST00000510737 ZBTB22O15209 634 aa26.79■■□□□ 1.88
USP53-206ENST00000510737 ABCB7O75027 752 aa26.73■■□□□ 1.87
USP53-206ENST00000510737 ATF5Q9Y2D1 282 aaPredicted RBP26.5■■□□□ 1.83
USP53-206ENST00000510737 POLA2Q14181 598 aa26.29■■□□□ 1.8
USP53-206ENST00000510737 ATXN8OSP0DMR3 200 aa25.96■■□□□ 1.75
USP53-206ENST00000510737 CSRNP3Q8WYN3 585 aa25.79■■□□□ 1.72
USP53-206ENST00000510737 RBM42Q9BTD8 480 aaKnown RBP25.66■■□□□ 1.7
USP53-206ENST00000510737 ZBTB12Q9Y330 459 aaPredicted RBP25.62■■□□□ 1.69
USP53-206ENST00000510737 EHMT2Q96KQ7 1210 aa25.59■■□□□ 1.69
USP53-206ENST00000510737 OSCARQ8IYS5 282 aa25.47■■□□□ 1.67
USP53-206ENST00000510737 POTEHQ6S545 545 aa25.37■■□□□ 1.65
USP53-206ENST00000510737 MKRN4PQ13434 485 aaPredicted RBP25.27■■□□□ 1.64
USP53-206ENST00000510737 AKT1S1Q96B36 256 aa25.22■■□□□ 1.63
USP53-206ENST00000510737 FBLN2P98095 1184 aa25.18■■□□□ 1.62
USP53-206ENST00000510737 CHRDL2Q6WN34 429 aa25.08■■□□□ 1.61
USP53-206ENST00000510737 REM2Q8IYK8 340 aaPredicted RBP25.05■■□□□ 1.6
USP53-206ENST00000510737 SPDYE2BA6NHP3 402 aa24.94■■□□□ 1.58
USP53-206ENST00000510737 SPDYE6P0CI01 402 aa24.94■■□□□ 1.58
USP53-206ENST00000510737 SPDYE2Q495Y8 402 aa24.94■■□□□ 1.58
USP53-206ENST00000510737 PITPNM1O00562 1244 aa24.81■■□□□ 1.56
USP53-206ENST00000510737 SSUH2Q9Y2M2 353 aa24.74■■□□□ 1.55
USP53-206ENST00000510737 ZNF692Q9BU19 519 aaPredicted RBP24.72■■□□□ 1.55
USP53-206ENST00000510737 PIP4P2Q8N4L2 257 aa24.61■■□□□ 1.53
USP53-206ENST00000510737 FXR2P51116 673 aaKnown RBP eCLIP24.51■■□□□ 1.51
USP53-206ENST00000510737 PABPN1Q86U42 306 aaKnown RBP eCLIP24.41■■□□□ 1.5
USP53-206ENST00000510737 SPDYE1Q8NFV5 336 aaPredicted RBP24.4■■□□□ 1.5
USP53-206ENST00000510737 CLEC11AQ9Y240 323 aa24.39■■□□□ 1.49
USP53-206ENST00000510737 SPDYE4A6NLX3 237 aa24.12■■□□□ 1.45
USP53-206ENST00000510737 PRKAR2AP13861 404 aaKnown RBP24.12■■□□□ 1.45
USP53-206ENST00000510737 PRR29P0C7W0 189 aa24.01■■□□□ 1.43
USP53-206ENST00000510737 CHADLQ6NUI6 762 aa24■■□□□ 1.43
USP53-206ENST00000510737 HAX1O00165 279 aa23.99■■□□□ 1.43
USP53-206ENST00000510737 EVX2Q03828 476 aa23.92■■□□□ 1.42
USP53-206ENST00000510737 SP7Q8TDD2 431 aaPredicted RBP23.92■■□□□ 1.42
USP53-206ENST00000510737 C19orf67A6NJJ6 358 aa23.71■■□□□ 1.39
USP53-206ENST00000510737 PROM2Q8N271 834 aa23.67■■□□□ 1.38
USP53-206ENST00000510737 STAG3Q9UJ98 1225 aa23.67■■□□□ 1.38
USP53-206ENST00000510737 CREBZFQ9NS37 354 aa23.62■■□□□ 1.37
USP53-206ENST00000510737 FARP1Q9Y4F1 1045 aaPredicted RBP23.61■■□□□ 1.37
USP53-206ENST00000510737 CD44P16070 742 aaKnown RBP23.36■■□□□ 1.33
USP53-206ENST00000510737 MNX1P50219 401 aaPredicted RBP23.3■■□□□ 1.32
USP53-206ENST00000510737 FKBP8Q14318 412 aa23.29■■□□□ 1.32
USP53-206ENST00000510737 GABBR2O75899 941 aa23.28■■□□□ 1.32
USP53-206ENST00000510737 ZRANB1Q9UGI0 708 aa23.09■■□□□ 1.29
USP53-206ENST00000510737 ZNF579Q8NAF0 562 aaKnown RBP23.03■■□□□ 1.28
USP53-206ENST00000510737 NPM1P06748 294 aaKnown RBP eCLIP23.01■■□□□ 1.27
USP53-206ENST00000510737 MIER1Q8N108 512 aa22.93■■□□□ 1.26
USP53-206ENST00000510737 POTEIP0CG38 1075 aa22.89■■□□□ 1.25
USP53-206ENST00000510737 PHF12Q96QT6 1004 aa22.88■■□□□ 1.25
USP53-206ENST00000510737 PAK3O75914 559 aaPredicted RBP22.82■■□□□ 1.24
USP53-206ENST00000510737 CLCN6P51797 869 aa22.82■■□□□ 1.24
USP53-206ENST00000510737 GALR2O43603 387 aaPredicted RBP22.8■■□□□ 1.24
USP53-206ENST00000510737 PLCD3Q8N3E9 789 aa22.77■■□□□ 1.24
USP53-206ENST00000510737 TSPYL2Q9H2G4 693 aaPredicted RBP22.73■■□□□ 1.23
USP53-206ENST00000510737 PLEKHG5O94827 1062 aa22.72■■□□□ 1.23
USP53-206ENST00000510737 RASEFQ8IZ41 740 aa22.69■■□□□ 1.22
USP53-206ENST00000510737 CCDC61Q9Y6R9 512 aa22.65■■□□□ 1.22
USP53-206ENST00000510737 DCBLD2Q96PD2 775 aa22.61■■□□□ 1.21
USP53-206ENST00000510737 MS4A3Q96HJ5 214 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 171.9 ms