RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 LGR4Q9BXB1 951 aa5.6□□□□□ -1.51
PTCD3-216ENST00000487043 FOXQ1Q9C009 403 aa5.6□□□□□ -1.51
PTCD3-216ENST00000487043 MKRN2Q9H000 416 aaKnown RBP5.6□□□□□ -1.51
PTCD3-216ENST00000487043 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.6□□□□□ -1.51
PTCD3-216ENST00000487043 FAM105AQ9NUU6 356 aa5.6□□□□□ -1.51
PTCD3-216ENST00000487043 SUSD2Q9UGT4 822 aa5.6□□□□□ -1.51
PTCD3-216ENST00000487043 ACTL7BQ9Y614 415 aa5.6□□□□□ -1.51
PTCD3-216ENST00000487043 HSP90AA2PQ14568 343 aaPredicted RBP5.59□□□□□ -1.51
PTCD3-216ENST00000487043 ZC3H12BQ5HYM0 836 aaKnown RBP5.59□□□□□ -1.51
PTCD3-216ENST00000487043 FAM209AQ5JX71 171 aa5.59□□□□□ -1.51
PTCD3-216ENST00000487043 YOD1Q5VVQ6 348 aaPredicted RBP5.59□□□□□ -1.51
PTCD3-216ENST00000487043 OGFOD2Q6N063 350 aa5.59□□□□□ -1.51
PTCD3-216ENST00000487043 CDPF1Q6NVV7 123 aa5.59□□□□□ -1.51
PTCD3-216ENST00000487043 SHISA5Q8N114 240 aa5.59□□□□□ -1.51
PTCD3-216ENST00000487043 C2CD4AQ8NCU7 369 aaPredicted RBP5.59□□□□□ -1.51
PTCD3-216ENST00000487043 SMARCC1Q92922 1105 aaPredicted RBP5.59□□□□□ -1.51
PTCD3-216ENST00000487043 ASIC4Q96FT7 647 aa5.59□□□□□ -1.51
PTCD3-216ENST00000487043 EXOC2Q96KP1 924 aa5.59□□□□□ -1.51
PTCD3-216ENST00000487043 IPO9Q96P70 1041 aaKnown RBP5.59□□□□□ -1.51
PTCD3-216ENST00000487043 DHRS4Q9BTZ2 278 aa5.59□□□□□ -1.51
PTCD3-216ENST00000487043 ARHGEF4Q9NR80 690 aa5.59□□□□□ -1.51
PTCD3-216ENST00000487043 APEX2Q9UBZ4 518 aa5.59□□□□□ -1.51
PTCD3-216ENST00000487043 PCOLCE2Q9UKZ9 415 aa5.59□□□□□ -1.51
PTCD3-216ENST00000487043 PLAAQ9Y263 795 aa5.59□□□□□ -1.51
PTCD3-216ENST00000487043 SUGT1Q9Y2Z0 365 aa5.59□□□□□ -1.51
PTCD3-216ENST00000487043 TRAV20A0A0B4J274 112 aa5.58□□□□□ -1.52
PTCD3-216ENST00000487043 CCDC163A0A0D9SF12 145 aa5.58□□□□□ -1.52
PTCD3-216ENST00000487043 IRS4O14654 1257 aaPredicted RBP5.58□□□□□ -1.52
PTCD3-216ENST00000487043 CBFA2T2O43439 604 aa5.58□□□□□ -1.52
PTCD3-216ENST00000487043 MARCH6O60337 910 aa5.58□□□□□ -1.52
PTCD3-216ENST00000487043 ITGAVP06756 1048 aa5.58□□□□□ -1.52
PTCD3-216ENST00000487043 RAB6AP20340 208 aa5.58□□□□□ -1.52
PTCD3-216ENST00000487043 CNGA1P29973 690 aa5.58□□□□□ -1.52
PTCD3-216ENST00000487043 CAP2P40123 477 aa5.58□□□□□ -1.52
PTCD3-216ENST00000487043 PPP2R2AP63151 447 aa5.58□□□□□ -1.52
PTCD3-216ENST00000487043 PABPC4Q13310 644 aaKnown RBP eCLIP5.58□□□□□ -1.52
PTCD3-216ENST00000487043 ARMCX6Q7L4S7 300 aa5.58□□□□□ -1.52
PTCD3-216ENST00000487043 NIM1KQ8IY84 436 aa5.58□□□□□ -1.52
PTCD3-216ENST00000487043 RPUSD2Q8IZ73 545 aaKnown RBP5.58□□□□□ -1.52
PTCD3-216ENST00000487043 FLCNQ8NFG4 579 aa5.58□□□□□ -1.52
PTCD3-216ENST00000487043 NINJ1Q92982 152 aa5.58□□□□□ -1.52
PTCD3-216ENST00000487043 AARSD1Q9BTE6 412 aaKnown RBP5.58□□□□□ -1.52
PTCD3-216ENST00000487043 KLHL25Q9H0H3 589 aa5.58□□□□□ -1.52
PTCD3-216ENST00000487043 GSX1Q9H4S2 264 aaPredicted RBP5.58□□□□□ -1.52
PTCD3-216ENST00000487043 LGR6Q9HBX8 967 aa5.58□□□□□ -1.52
PTCD3-216ENST00000487043 BSDC1Q9NW68 430 aaPredicted RBP5.58□□□□□ -1.52
PTCD3-216ENST00000487043 ZNF451Q9Y4E5 1061 aa5.58□□□□□ -1.52
PTCD3-216ENST00000487043 TRBV23-1A0A0A0MS06 115 aa5.57□□□□□ -1.52
PTCD3-216ENST00000487043 LRIG2O94898 1065 aa5.57□□□□□ -1.52
PTCD3-216ENST00000487043 RAPGEF3O95398 923 aa5.57□□□□□ -1.52
PTCD3-216ENST00000487043 PRNPP04156 253 aa5.57□□□□□ -1.52
PTCD3-216ENST00000487043 MYCLP1P12525 358 aaPredicted RBP5.57□□□□□ -1.52
PTCD3-216ENST00000487043 DUSP27Q5VZP5 1158 aa5.57□□□□□ -1.52
PTCD3-216ENST00000487043 KRT26Q7Z3Y9 468 aa5.57□□□□□ -1.52
PTCD3-216ENST00000487043 MFSD2AQ8NA29 543 aa5.57□□□□□ -1.52
PTCD3-216ENST00000487043 PPP1R13LQ8WUF5 828 aa5.57□□□□□ -1.52
PTCD3-216ENST00000487043 KISS1RQ969F8 398 aaPredicted RBP5.57□□□□□ -1.52
PTCD3-216ENST00000487043 MFSD3Q96ES6 412 aa5.57□□□□□ -1.52
PTCD3-216ENST00000487043 GBP3Q9H0R5 595 aa5.57□□□□□ -1.52
PTCD3-216ENST00000487043 NCOA5Q9HCD5 579 aaKnown RBP5.57□□□□□ -1.52
PTCD3-216ENST00000487043 METTL14Q9HCE5 456 aaKnown RBP5.57□□□□□ -1.52
PTCD3-216ENST00000487043 LRRC4CQ9HCJ2 640 aa5.57□□□□□ -1.52
PTCD3-216ENST00000487043 KLHL42Q9P2K6 505 aa5.57□□□□□ -1.52
PTCD3-216ENST00000487043 CEP131Q9UPN4 1083 aa5.57□□□□□ -1.52
PTCD3-216ENST00000487043 MRPS23Q9Y3D9 190 aaKnown RBP5.57□□□□□ -1.52
PTCD3-216ENST00000487043 LAMC3Q9Y6N6 1575 aa5.57□□□□□ -1.52
PTCD3-216ENST00000487043 FAM170BA6NMN3 283 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 PRODHO43272 600 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 PPM1BO75688 479 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 VIL1P09327 827 aaKnown RBP5.56□□□□□ -1.52
PTCD3-216ENST00000487043 CD247P20963 164 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 ADMP35318 185 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 TM4SF20Q53R12 229 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 NBPF12Q5TAG4 269 aaPredicted RBP5.56□□□□□ -1.52
PTCD3-216ENST00000487043 ZAR1Q86SH2 424 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 CDH24Q86UP0 819 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 ZNF227Q86WZ6 799 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 SCUBE1Q8IWY4 988 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 C7orf61Q8IZ16 206 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 AGBL5Q8NDL9 886 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 BVESQ8NE79 360 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 ADCY4Q8NFM4 1077 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 RIN3Q8TB24 985 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 KREMEN1Q96MU8 473 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 CLUHP3Q96NS8 147 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 MIPEPQ99797 713 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 DDX56Q9NY93 547 aaKnown RBP5.56□□□□□ -1.52
PTCD3-216ENST00000487043 DAGLAQ9Y4D2 1042 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 NESP48681 1621 aa5.56□□□□□ -1.52
PTCD3-216ENST00000487043 PRDM2Q13029 1718 aa5.55□□□□□ -1.52
PTCD3-216ENST00000487043 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.55□□□□□ -1.52
PTCD3-216ENST00000487043 NOP56O00567 594 aaKnown RBP5.55□□□□□ -1.52
PTCD3-216ENST00000487043 PLD2O14939 933 aa5.55□□□□□ -1.52
PTCD3-216ENST00000487043 TBX1O43435 398 aa5.55□□□□□ -1.52
PTCD3-216ENST00000487043 RFPL3O75679 317 aa5.55□□□□□ -1.52
PTCD3-216ENST00000487043 PABPC1P11940 636 aaKnown RBP5.55□□□□□ -1.52
PTCD3-216ENST00000487043 GRIA2P42262 883 aa5.55□□□□□ -1.52
PTCD3-216ENST00000487043 AUHQ13825 339 aaKnown RBP5.55□□□□□ -1.52
PTCD3-216ENST00000487043 MAP7Q14244 749 aa5.55□□□□□ -1.52
PTCD3-216ENST00000487043 LETMD1Q6P1Q0 360 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms