RNA–Protein interactions for RNA: ENST00000486530.1

HPS3-206, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 5

Gene HPS3, Length 1,894 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-206ENST00000486530 MYL5Q02045 173 aa23.18■■□□□ 1.3
HPS3-206ENST00000486530 NFIAQ12857 509 aa23.18■■□□□ 1.3
HPS3-206ENST00000486530 PPP4R3BQ5MIZ7 849 aa23.18■■□□□ 1.3
HPS3-206ENST00000486530 ZNF713Q8N859 430 aaPredicted RBP23.18■■□□□ 1.3
HPS3-206ENST00000486530 DHX58Q96C10 678 aa23.18■■□□□ 1.3
HPS3-206ENST00000486530 PYM1Q9BRP8 204 aaKnown RBP23.18■■□□□ 1.3
HPS3-206ENST00000486530 DHX36Q9H2U1 1008 aaKnown RBP23.18■■□□□ 1.3
HPS3-206ENST00000486530 SLFN14P0C7P3 912 aa23.17■■□□□ 1.3
HPS3-206ENST00000486530 SNHG28P0DPA3 235 aa23.17■■□□□ 1.3
HPS3-206ENST00000486530 NAPAP54920 295 aa23.17■■□□□ 1.3
HPS3-206ENST00000486530 IDI2Q9BXS1 227 aa23.17■■□□□ 1.3
HPS3-206ENST00000486530 RIOX1Q9H6W3 641 aa23.17■■□□□ 1.3
HPS3-206ENST00000486530 SERPINA10Q9UK55 444 aa23.17■■□□□ 1.3
HPS3-206ENST00000486530 MAN1B1Q9UKM7 699 aa23.17■■□□□ 1.3
HPS3-206ENST00000486530 NPM3O75607 178 aaKnown RBP23.17■■□□□ 1.3
HPS3-206ENST00000486530 PRR29P0C7W0 189 aa23.17■■□□□ 1.3
HPS3-206ENST00000486530 RASGRP4Q8TDF6 673 aa23.17■■□□□ 1.3
HPS3-206ENST00000486530 CPVLQ9H3G5 476 aa23.17■■□□□ 1.3
HPS3-206ENST00000486530 PIM2Q9P1W9 311 aa23.17■■□□□ 1.3
HPS3-206ENST00000486530 NRBP1Q9UHY1 535 aa23.17■■□□□ 1.3
HPS3-206ENST00000486530 DACH1Q9UI36 760 aa23.17■■□□□ 1.3
HPS3-206ENST00000486530 A0A087X0B3 334 aa23.16■■□□□ 1.3
HPS3-206ENST00000486530 MYO1BO43795 1136 aa23.16■■□□□ 1.3
HPS3-206ENST00000486530 GNA11P29992 359 aa23.16■■□□□ 1.3
HPS3-206ENST00000486530 LRRC47Q8N1G4 583 aaKnown RBP23.16■■□□□ 1.3
HPS3-206ENST00000486530 SPATA20Q8TB22 786 aa23.16■■□□□ 1.3
HPS3-206ENST00000486530 CCDC17Q96LX7 622 aa23.16■■□□□ 1.3
HPS3-206ENST00000486530 C6orf50Q9HD87 102 aa23.16■■□□□ 1.3
HPS3-206ENST00000486530 SMC2O95347 1197 aa23.15■■□□□ 1.3
HPS3-206ENST00000486530 LONP1P36776 959 aaKnown RBP23.15■■□□□ 1.3
HPS3-206ENST00000486530 NOLC1Q14978 699 aaKnown RBP eCLIP23.15■■□□□ 1.3
HPS3-206ENST00000486530 KRT25Q7Z3Z0 450 aa23.15■■□□□ 1.3
HPS3-206ENST00000486530 SH3RF1Q7Z6J0 888 aa23.15■■□□□ 1.3
HPS3-206ENST00000486530 HOMER1Q86YM7 354 aa23.15■■□□□ 1.3
HPS3-206ENST00000486530 C4orf32Q8N8J7 132 aa23.15■■□□□ 1.3
HPS3-206ENST00000486530 MLKLQ8NB16 471 aa23.15■■□□□ 1.3
HPS3-206ENST00000486530 KIAA1524Q8TCG1 905 aa23.15■■□□□ 1.3
HPS3-206ENST00000486530 SPTLC3Q9NUV7 552 aa23.15■■□□□ 1.3
HPS3-206ENST00000486530 PCDHAC2Q9Y5I4 1007 aa23.15■■□□□ 1.3
HPS3-206ENST00000486530 ESYT2A0FGR8 921 aa23.15■■□□□ 1.3
HPS3-206ENST00000486530 RBM5P52756 815 aaKnown RBP eCLIP23.15■■□□□ 1.3
HPS3-206ENST00000486530 MORC3Q14149 939 aa23.15■■□□□ 1.3
HPS3-206ENST00000486530 SOGA3Q5TF21 947 aa23.15■■□□□ 1.3
HPS3-206ENST00000486530 ILDR2Q71H61 639 aa23.15■■□□□ 1.3
HPS3-206ENST00000486530 NAP1L5Q96NT1 182 aaPredicted RBP23.15■■□□□ 1.3
HPS3-206ENST00000486530 ZNF277Q9NRM2 450 aaPredicted RBP23.15■■□□□ 1.3
HPS3-206ENST00000486530 BMP6P22004 513 aa23.14■■□□□ 1.29
HPS3-206ENST00000486530 CCDC144BQ3MJ40 725 aa23.14■■□□□ 1.29
HPS3-206ENST00000486530 GRAMD1CQ8IYS0 662 aa23.14■■□□□ 1.29
HPS3-206ENST00000486530 PIGSQ96S52 555 aa23.14■■□□□ 1.29
HPS3-206ENST00000486530 VPS33BQ9H267 617 aa23.14■■□□□ 1.29
HPS3-206ENST00000486530 PYCARDQ9ULZ3 195 aa23.14■■□□□ 1.29
HPS3-206ENST00000486530 FRMPD2Q68DX3 1309 aaPredicted RBP23.14■■□□□ 1.29
HPS3-206ENST00000486530 SMCO2A6NFE2 343 aa23.13■■□□□ 1.29
HPS3-206ENST00000486530 LAD1O00515 517 aa23.13■■□□□ 1.29
HPS3-206ENST00000486530 EIF6P56537 245 aaKnown RBP23.13■■□□□ 1.29
HPS3-206ENST00000486530 INF2Q27J81 1249 aa23.13■■□□□ 1.29
HPS3-206ENST00000486530 SGIP1Q9BQI5 828 aa23.13■■□□□ 1.29
HPS3-206ENST00000486530 NEMFO60524 1076 aa23.13■■□□□ 1.29
HPS3-206ENST00000486530 IL17AQ16552 155 aa23.13■■□□□ 1.29
HPS3-206ENST00000486530 ZFPM1Q8IX07 1006 aa23.13■■□□□ 1.29
HPS3-206ENST00000486530 IQUBQ8NA54 791 aa23.13■■□□□ 1.29
HPS3-206ENST00000486530 PAGE5Q96GU1 130 aa23.13■■□□□ 1.29
HPS3-206ENST00000486530 UBA5Q9GZZ9 404 aa23.13■■□□□ 1.29
HPS3-206ENST00000486530 HSD3B7Q9H2F3 369 aa23.13■■□□□ 1.29
HPS3-206ENST00000486530 VAT1LQ9HCJ6 419 aa23.13■■□□□ 1.29
HPS3-206ENST00000486530 PI4KBQ9UBF8 816 aa23.13■■□□□ 1.29
HPS3-206ENST00000486530 FAM198AQ9UFP1 575 aa23.13■■□□□ 1.29
HPS3-206ENST00000486530 MPHOSPH10O00566 681 aaKnown RBP23.12■■□□□ 1.29
HPS3-206ENST00000486530 TXLNAP40222 546 aa23.12■■□□□ 1.29
HPS3-206ENST00000486530 ZNF543Q08ER8 600 aa23.12■■□□□ 1.29
HPS3-206ENST00000486530 CLEC10AQ8IUN9 316 aa23.12■■□□□ 1.29
HPS3-206ENST00000486530 LARGE2Q8N3Y3 721 aa23.12■■□□□ 1.29
HPS3-206ENST00000486530 XPO4Q9C0E2 1151 aaKnown RBP23.12■■□□□ 1.29
HPS3-206ENST00000486530 PPP1R1BQ9UD71 204 aaPredicted RBP23.12■■□□□ 1.29
HPS3-206ENST00000486530 LMOD1P29536 600 aaPredicted RBP23.11■■□□□ 1.29
HPS3-206ENST00000486530 NONOQ15233 471 aaKnown RBP eCLIP23.11■■□□□ 1.29
HPS3-206ENST00000486530 E2F4Q16254 413 aa23.11■■□□□ 1.29
HPS3-206ENST00000486530 DALRD3Q5D0E6 543 aaKnown RBP23.11■■□□□ 1.29
HPS3-206ENST00000486530 DNAJC18Q9H819 358 aa23.11■■□□□ 1.29
HPS3-206ENST00000486530 IFNKQ9P0W0 207 aa23.11■■□□□ 1.29
HPS3-206ENST00000486530 IMPACTQ9P2X3 320 aa23.11■■□□□ 1.29
HPS3-206ENST00000486530 PRPHP41219 470 aa23.11■■□□□ 1.29
HPS3-206ENST00000486530 CACNB3P54284 484 aa23.11■■□□□ 1.29
HPS3-206ENST00000486530 TCP10Q12799 353 aa23.11■■□□□ 1.29
HPS3-206ENST00000486530 CT47A1Q5JQC4 288 aaPredicted RBP23.11■■□□□ 1.29
HPS3-206ENST00000486530 GPATCH4Q5T3I0 446 aaKnown RBP23.11■■□□□ 1.29
HPS3-206ENST00000486530 COL2A1P02458 1487 aaPredicted RBP23.11■■□□□ 1.29
HPS3-206ENST00000486530 COL4A5P29400 1685 aa23.11■■□□□ 1.29
HPS3-206ENST00000486530 VIL1P09327 827 aaKnown RBP23.1■■□□□ 1.29
HPS3-206ENST00000486530 AFMP43652 599 aa23.1■■□□□ 1.29
HPS3-206ENST00000486530 GSDMDP57764 484 aa23.1■■□□□ 1.29
HPS3-206ENST00000486530 FANCCQ00597 558 aa23.1■■□□□ 1.29
HPS3-206ENST00000486530 DTHD1Q6ZMT9 781 aa23.1■■□□□ 1.29
HPS3-206ENST00000486530 GSDMAQ96QA5 445 aa23.1■■□□□ 1.29
HPS3-206ENST00000486530 ARFGEF1Q9Y6D6 1849 aa23.1■■□□□ 1.29
HPS3-206ENST00000486530 DDTLA6NHG4 134 aaPredicted RBP23.09■■□□□ 1.29
HPS3-206ENST00000486530 DPYDQ12882 1025 aa23.09■■□□□ 1.29
HPS3-206ENST00000486530 LRMPQ12912 555 aa23.09■■□□□ 1.29
HPS3-206ENST00000486530 ORC2Q13416 577 aaPredicted RBP23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms