RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MSRAQ9UJ68 235 aa14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 MUC6Q6W4X9 2439 aa14.24□□□□□ -0.13
SQSTM1-206ENST00000466342 A0A1W2PQ45 241 aaPredicted RBP14.24□□□□□ -0.13
SQSTM1-206ENST00000466342 A0A1W2PQY0 241 aa14.24□□□□□ -0.13
SQSTM1-206ENST00000466342 CHGBP05060 677 aa14.24□□□□□ -0.13
SQSTM1-206ENST00000466342 KCNQ1P51787 676 aa14.24□□□□□ -0.13
SQSTM1-206ENST00000466342 PPIGQ13427 754 aaKnown RBP eCLIP14.24□□□□□ -0.134e-12■■□□□ 11.7
SQSTM1-206ENST00000466342 RAB30Q15771 203 aa14.24□□□□□ -0.13
SQSTM1-206ENST00000466342 SLFNL1Q499Z3 407 aa14.24□□□□□ -0.13
SQSTM1-206ENST00000466342 RNF180Q86T96 592 aa14.24□□□□□ -0.13
SQSTM1-206ENST00000466342 XPNPEP3Q9NQH7 507 aa14.24□□□□□ -0.13
SQSTM1-206ENST00000466342 SLC5A4Q9NY91 659 aa14.24□□□□□ -0.13
SQSTM1-206ENST00000466342 TRIM6-TRIM34B2RNG4 842 aa14.23□□□□□ -0.13
SQSTM1-206ENST00000466342 RNF113AO15541 343 aaKnown RBP14.23□□□□□ -0.13
SQSTM1-206ENST00000466342 COBLO75128 1261 aa14.23□□□□□ -0.13
SQSTM1-206ENST00000466342 RARBP10826 455 aa14.23□□□□□ -0.13
SQSTM1-206ENST00000466342 USP14P54578 494 aa14.23□□□□□ -0.13
SQSTM1-206ENST00000466342 ZYXQ15942 572 aaKnown RBP14.23□□□□□ -0.13
SQSTM1-206ENST00000466342 TTC22Q5TAA0 569 aa14.23□□□□□ -0.13
SQSTM1-206ENST00000466342 TICAM2Q86XR7 235 aa14.23□□□□□ -0.13
SQSTM1-206ENST00000466342 APPBP2Q92624 585 aa14.23□□□□□ -0.13
SQSTM1-206ENST00000466342 SLC28A3Q9HAS3 691 aa14.23□□□□□ -0.13
SQSTM1-206ENST00000466342 TRANK1O15050 2925 aa14.23□□□□□ -0.13
SQSTM1-206ENST00000466342 MYH8P13535 1937 aa14.22□□□□□ -0.13
SQSTM1-206ENST00000466342 SPDYE16A6NNV3 312 aaPredicted RBP14.22□□□□□ -0.13
SQSTM1-206ENST00000466342 POLR3DP05423 398 aaPredicted RBP14.22□□□□□ -0.13
SQSTM1-206ENST00000466342 PLCD1P51178 756 aa14.22□□□□□ -0.13
SQSTM1-206ENST00000466342 RILPL2Q969X0 211 aa14.22□□□□□ -0.13
SQSTM1-206ENST00000466342 FEZ1Q99689 392 aa14.22□□□□□ -0.13
SQSTM1-206ENST00000466342 MOV10L1Q9BXT6 1211 aaKnown RBP14.22□□□□□ -0.13
SQSTM1-206ENST00000466342 MBD4O95243 580 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 PGK1P00558 417 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 GH2P01242 217 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 GSPT1P15170 499 aaKnown RBP14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 VCAM1P19320 739 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 CERKLQ49MI3 558 aaPredicted RBP14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 ZNF365Q70YC5 407 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 LCORLQ8N3X6 602 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 SHCBP1Q8NEM2 672 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 HERVK_113Q902F9 699 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 MAML3Q96JK9 1138 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 TSEN34Q9BSV6 310 aaKnown RBP14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 KIAA1683Q9H0B3 1180 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 PUS7LQ9H0K6 701 aaKnown RBP14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 NKX2-4Q9H2Z4 354 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 CABP5Q9NP86 173 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 DCP1AQ9NPI6 582 aaPredicted RBP14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 C11orf16Q9NQ32 467 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 ATP8A2Q9NTI2 1148 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 MCM9Q9NXL9 1143 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 NRBP1Q9UHY1 535 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 TBX21Q9UL17 535 aa14.21□□□□□ -0.13
SQSTM1-206ENST00000466342 LRRC37A2A6NM11 1700 aa14.21□□□□□ -0.14
SQSTM1-206ENST00000466342 GABPAQ06546 454 aa14.2□□□□□ -0.14
SQSTM1-206ENST00000466342 ABCB5Q2M3G0 1257 aa14.2□□□□□ -0.14
SQSTM1-206ENST00000466342 ZMYM1Q5SVZ6 1142 aa14.2□□□□□ -0.14
SQSTM1-206ENST00000466342 PSRC1Q6PGN9 363 aaPredicted RBP14.2□□□□□ -0.14
SQSTM1-206ENST00000466342 MICALL1Q8N3F8 863 aa14.2□□□□□ -0.14
SQSTM1-206ENST00000466342 TMEM199Q8N511 208 aa14.2□□□□□ -0.14
SQSTM1-206ENST00000466342 NUP133Q8WUM0 1156 aa14.2□□□□□ -0.14
SQSTM1-206ENST00000466342 OSBP2Q969R2 916 aa14.2□□□□□ -0.14
SQSTM1-206ENST00000466342 ARMT1Q9H993 441 aa14.2□□□□□ -0.14
SQSTM1-206ENST00000466342 STARD7Q9NQZ5 370 aa14.2□□□□□ -0.14
SQSTM1-206ENST00000466342 HOXC10Q9NYD6 342 aa14.2□□□□□ -0.14
SQSTM1-206ENST00000466342 TLL1O43897 1013 aa14.19□□□□□ -0.14
SQSTM1-206ENST00000466342 ACRP10323 421 aa14.19□□□□□ -0.14
SQSTM1-206ENST00000466342 CSF2RAP15509 400 aa14.19□□□□□ -0.14
SQSTM1-206ENST00000466342 ERCC3P19447 782 aa14.19□□□□□ -0.14
SQSTM1-206ENST00000466342 SHMT1P34896 483 aa14.19□□□□□ -0.14
SQSTM1-206ENST00000466342 MRE11P49959 708 aa14.19□□□□□ -0.14
SQSTM1-206ENST00000466342 COG2Q14746 738 aa14.19□□□□□ -0.14
SQSTM1-206ENST00000466342 SKAP1Q86WV1 359 aa14.19□□□□□ -0.14
SQSTM1-206ENST00000466342 ABRAQ8N0Z2 381 aa14.19□□□□□ -0.14
SQSTM1-206ENST00000466342 SDR42E1Q8WUS8 393 aa14.19□□□□□ -0.14
SQSTM1-206ENST00000466342 SPATC1LQ9H0A9 340 aa14.19□□□□□ -0.14
SQSTM1-206ENST00000466342 RPAP3Q9H6T3 665 aaPredicted RBP14.19□□□□□ -0.14
SQSTM1-206ENST00000466342 PRRC2BQ5JSZ5 2229 aaKnown RBP14.19□□□□□ -0.14
SQSTM1-206ENST00000466342 MROH7Q68CQ1 1323 aa14.18□□□□□ -0.14
SQSTM1-206ENST00000466342 SMIM22K7EJ46 135 aa14.18□□□□□ -0.14
SQSTM1-206ENST00000466342 M0R2C6 588 aa14.18□□□□□ -0.14
SQSTM1-206ENST00000466342 SDSP20132 328 aa14.18□□□□□ -0.14
SQSTM1-206ENST00000466342 ACLYP53396 1101 aa14.18□□□□□ -0.14
SQSTM1-206ENST00000466342 SKIV2LQ15477 1246 aaKnown RBP14.18□□□□□ -0.14
SQSTM1-206ENST00000466342 STRBPQ96SI9 672 aaKnown RBP14.18□□□□□ -0.14
SQSTM1-206ENST00000466342 SEC62Q99442 399 aaKnown RBP14.18□□□□□ -0.14
SQSTM1-206ENST00000466342 MROH8Q9H579 483 aa14.18□□□□□ -0.14
SQSTM1-206ENST00000466342 SWAP70Q9UH65 585 aa14.18□□□□□ -0.14
SQSTM1-206ENST00000466342 COG5Q9UP83 839 aa14.18□□□□□ -0.14
SQSTM1-206ENST00000466342 YBX2Q9Y2T7 364 aaKnown RBP14.18□□□□□ -0.14
SQSTM1-206ENST00000466342 A0A0G2JMZ2 1700 aa14.18□□□□□ -0.14
SQSTM1-206ENST00000466342 PI4K2BG5E9Z4 385 aa14.17□□□□□ -0.14
SQSTM1-206ENST00000466342 HIP1O00291 1037 aa14.17□□□□□ -0.14
SQSTM1-206ENST00000466342 GPAA1O43292 621 aa14.17□□□□□ -0.14
SQSTM1-206ENST00000466342 ADAMTS4O75173 837 aa14.17□□□□□ -0.14
SQSTM1-206ENST00000466342 POU3F3P20264 500 aaPredicted RBP14.17□□□□□ -0.14
SQSTM1-206ENST00000466342 CDK7P50613 346 aa14.17□□□□□ -0.14
SQSTM1-206ENST00000466342 RAB3GAP1Q15042 981 aa14.17□□□□□ -0.14
SQSTM1-206ENST00000466342 ACER1Q8TDN7 264 aa14.17□□□□□ -0.14
SQSTM1-206ENST00000466342 KHSRPQ92945 711 aaKnown RBP eCLIP14.17□□□□□ -0.14
SQSTM1-206ENST00000466342 DDRGK1Q96HY6 314 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms