RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	KLHDC9	Q8NEP7	349 aa		13.41	□□□□□ -0.26
PTPN7-204	ENST00000462815	OSBP2	Q969R2	916 aa		13.41	□□□□□ -0.26
PTPN7-204	ENST00000462815	GOPC	Q9HD26	462 aa		13.41	□□□□□ -0.26
PTPN7-204	ENST00000462815	NYAP2	Q9P242	653 aa		13.41	□□□□□ -0.26
PTPN7-204	ENST00000462815	XIRP2	A4UGR9	3374 aa		13.41	□□□□□ -0.26
PTPN7-204	ENST00000462815	SYNGAP1	Q96PV0	1343 aa		13.4	□□□□□ -0.26
PTPN7-204	ENST00000462815	SYNRG	Q9UMZ2	1314 aa		13.4	□□□□□ -0.26
PTPN7-204	ENST00000462815	LRRC37A2	A6NM11	1700 aa		13.4	□□□□□ -0.26
PTPN7-204	ENST00000462815	NDUFB10	O96000	172 aa		13.4	□□□□□ -0.26
PTPN7-204	ENST00000462815	CLTB	P09497	229 aa		13.4	□□□□□ -0.26
PTPN7-204	ENST00000462815	AKR1A1	P14550	325 aa		13.4	□□□□□ -0.26
PTPN7-204	ENST00000462815	COPB2	P35606	906 aa		13.4	□□□□□ -0.26
PTPN7-204	ENST00000462815	FAAP100	Q0VG06	881 aa		13.4	□□□□□ -0.26
PTPN7-204	ENST00000462815	KCTD2	Q14681	263 aa		13.4	□□□□□ -0.26
PTPN7-204	ENST00000462815	GIMAP6	Q6P9H5	292 aa		13.4	□□□□□ -0.26
PTPN7-204	ENST00000462815	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.4	□□□□□ -0.26
PTPN7-204	ENST00000462815	ANKRD33	Q7Z3H0	272 aa		13.4	□□□□□ -0.26
PTPN7-204	ENST00000462815	MSL3	Q8N5Y2	521 aa	Known RBP	13.4	□□□□□ -0.26
PTPN7-204	ENST00000462815	SLF1	Q9BQI6	1058 aa		13.4	□□□□□ -0.26
PTPN7-204	ENST00000462815	LRRCC1	Q9C099	1032 aa		13.4	□□□□□ -0.26
PTPN7-204	ENST00000462815	MYADML2	A6NDP7	307 aa		13.39	□□□□□ -0.27
PTPN7-204	ENST00000462815		F5H6K3	240 aa		13.39	□□□□□ -0.27
PTPN7-204	ENST00000462815	MYCN	P04198	464 aa	Predicted RBP	13.39	□□□□□ -0.27
PTPN7-204	ENST00000462815	IRX5	P78411	483 aa	Predicted RBP	13.39	□□□□□ -0.27
PTPN7-204	ENST00000462815	KLRC3	Q07444	240 aa		13.39	□□□□□ -0.27
PTPN7-204	ENST00000462815	RNF180	Q86T96	592 aa		13.39	□□□□□ -0.27
PTPN7-204	ENST00000462815	KBTBD3	Q8NAB2	608 aa		13.39	□□□□□ -0.27
PTPN7-204	ENST00000462815	MKL1	Q969V6	931 aa		13.39	□□□□□ -0.27
PTPN7-204	ENST00000462815	TSEN34	Q9BSV6	310 aa	Known RBP	13.39	□□□□□ -0.27
PTPN7-204	ENST00000462815	TEX13B	Q9BXU2	312 aa		13.39	□□□□□ -0.27
PTPN7-204	ENST00000462815	KATNBL1	Q9H079	304 aa		13.39	□□□□□ -0.27
PTPN7-204	ENST00000462815	BCL11A	Q9H165	835 aa		13.39	□□□□□ -0.27
PTPN7-204	ENST00000462815	TACC3	Q9Y6A5	838 aa		13.39	□□□□□ -0.27
PTPN7-204	ENST00000462815	PLIN4	Q96Q06	1357 aa		13.39	□□□□□ -0.27
PTPN7-204	ENST00000462815	MYH4	Q9Y623	1939 aa		13.39	□□□□□ -0.27
PTPN7-204	ENST00000462815	CTAGE5	O15320	804 aa		13.38	□□□□□ -0.27
PTPN7-204	ENST00000462815	CST5	P28325	142 aa	Predicted RBP	13.38	□□□□□ -0.27
PTPN7-204	ENST00000462815	ACLY	P53396	1101 aa		13.38	□□□□□ -0.27
PTPN7-204	ENST00000462815	SNRNP48	Q6IEG0	339 aa	Known RBP	13.38	□□□□□ -0.27
PTPN7-204	ENST00000462815	ZSCAN25	Q6NSZ9	544 aa		13.38	□□□□□ -0.27
PTPN7-204	ENST00000462815	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.38	□□□□□ -0.27
PTPN7-204	ENST00000462815	AMOTL1	Q8IY63	956 aa		13.38	□□□□□ -0.27
PTPN7-204	ENST00000462815	TOX2	Q96NM4	488 aa		13.38	□□□□□ -0.27
PTPN7-204	ENST00000462815	SLC38A10	Q9HBR0	1119 aa		13.38	□□□□□ -0.27
PTPN7-204	ENST00000462815	ECHDC1	Q9NTX5	307 aa		13.38	□□□□□ -0.27
PTPN7-204	ENST00000462815	TBX21	Q9UL17	535 aa		13.38	□□□□□ -0.27
PTPN7-204	ENST00000462815	TRANK1	O15050	2925 aa		13.38	□□□□□ -0.27
PTPN7-204	ENST00000462815		M0R2C6	588 aa		13.37	□□□□□ -0.27
PTPN7-204	ENST00000462815	PQBP1	O60828	265 aa	Known RBP	13.37	□□□□□ -0.27
PTPN7-204	ENST00000462815	CDK7	P50613	346 aa		13.37	□□□□□ -0.27
PTPN7-204	ENST00000462815	NKX3-2	P78367	333 aa		13.37	□□□□□ -0.27
PTPN7-204	ENST00000462815	TSHZ3	Q63HK5	1081 aa		13.37	□□□□□ -0.27
PTPN7-204	ENST00000462815	PRPF38A	Q8NAV1	312 aa	Known RBP	13.37	□□□□□ -0.27
PTPN7-204	ENST00000462815	MYLIP	Q8WY64	445 aa		13.37	□□□□□ -0.27
PTPN7-204	ENST00000462815	APPBP2	Q92624	585 aa		13.37	□□□□□ -0.27
PTPN7-204	ENST00000462815	DDRGK1	Q96HY6	314 aa		13.37	□□□□□ -0.27
PTPN7-204	ENST00000462815	UPF3A	Q9H1J1	476 aa	Known RBP	13.37	□□□□□ -0.27
PTPN7-204	ENST00000462815	TMEM265	A0A087WTH1	108 aa		13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	MOXD2P	A6NHM9	499 aa		13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	FOXP2	O15409	715 aa		13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	GPAA1	O43292	621 aa		13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	DUSP11	O75319	330 aa	Known RBP	13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	KCNA10	Q16322	511 aa		13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	RASIP1	Q5U651	963 aa		13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	C16orf59	Q7L2K0	433 aa		13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	GMCL1P1	Q8NEA9	526 aa		13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	MAFA	Q8NHW3	353 aa	Predicted RBP	13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	CEP95	Q96GE4	821 aa		13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	DCTPP1	Q9H773	170 aa		13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	MTMR4	Q9NYA4	1195 aa		13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	RCAN3	Q9UKA8	241 aa		13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	SYNPO2	Q9UMS6	1093 aa		13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	CNPY2	Q9Y2B0	182 aa		13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	MCM3AP	O60318	1980 aa		13.36	□□□□□ -0.27
PTPN7-204	ENST00000462815	LCT	P09848	1927 aa		13.35	□□□□□ -0.27
PTPN7-204	ENST00000462815	RNF113A	O15541	343 aa	Known RBP	13.35	□□□□□ -0.27
PTPN7-204	ENST00000462815	PRDM1	O75626	825 aa		13.35	□□□□□ -0.27
PTPN7-204	ENST00000462815	ACVR2B	Q13705	512 aa		13.35	□□□□□ -0.27
PTPN7-204	ENST00000462815	STK11IP	Q8N1F8	1099 aa		13.35	□□□□□ -0.27
PTPN7-204	ENST00000462815	RNPC3	Q96LT9	517 aa	Known RBP	13.35	□□□□□ -0.27
PTPN7-204	ENST00000462815	RAVER2	Q9HCJ3	691 aa	Known RBP	13.35	□□□□□ -0.27
PTPN7-204	ENST00000462815	STARD7	Q9NQZ5	370 aa		13.35	□□□□□ -0.27
PTPN7-204	ENST00000462815	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.35	□□□□□ -0.27
PTPN7-204	ENST00000462815	CLIP2	Q9UDT6	1046 aa		13.35	□□□□□ -0.27
PTPN7-204	ENST00000462815	FAM184B	Q9ULE4	1060 aa		13.35	□□□□□ -0.27
PTPN7-204	ENST00000462815	ASTN1	O14525	1302 aa		13.35	□□□□□ -0.27
PTPN7-204	ENST00000462815	ZNF536	O15090	1300 aa		13.35	□□□□□ -0.27
PTPN7-204	ENST00000462815	MINDY4B	A8MYZ0	360 aa		13.34	□□□□□ -0.27
PTPN7-204	ENST00000462815	RAD21	O60216	631 aa		13.34	□□□□□ -0.27
PTPN7-204	ENST00000462815	TIMP1	P01033	207 aa		13.34	□□□□□ -0.27
PTPN7-204	ENST00000462815	RAG1	P15918	1043 aa		13.34	□□□□□ -0.27
PTPN7-204	ENST00000462815	OAZ1	P54368	228 aa		13.34	□□□□□ -0.27
PTPN7-204	ENST00000462815	GJA9	P57773	515 aa		13.34	□□□□□ -0.27
PTPN7-204	ENST00000462815	FPGS	Q05932	587 aa		13.34	□□□□□ -0.27
PTPN7-204	ENST00000462815	LRRC47	Q8N1G4	583 aa	Known RBP	13.34	□□□□□ -0.27
PTPN7-204	ENST00000462815	SEC62	Q99442	399 aa	Known RBP	13.34	□□□□□ -0.27
PTPN7-204	ENST00000462815	CHMP4B	Q9H444	224 aa	Known RBP	13.34	□□□□□ -0.27
PTPN7-204	ENST00000462815	MKNK2	Q9HBH9	465 aa		13.34	□□□□□ -0.27
PTPN7-204	ENST00000462815	TMEM39A	Q9NV64	488 aa		13.34	□□□□□ -0.27
PTPN7-204	ENST00000462815	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.34	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 105.2 ms