RNA–Protein interactions for RNA: ENST00000460168.1

HERC4-207, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 2,215 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-207ENST00000460168 MMP1P03956 469 aa11.86□□□□□ -0.51
HERC4-207ENST00000460168 PARP1P09874 1014 aaKnown RBP11.86□□□□□ -0.51
HERC4-207ENST00000460168 GOLGA6DP0CG33 693 aa11.86□□□□□ -0.51
HERC4-207ENST00000460168 MSNP26038 577 aaKnown RBP11.86□□□□□ -0.51
HERC4-207ENST00000460168 GMPSP49915 693 aaPredicted RBP11.86□□□□□ -0.51
HERC4-207ENST00000460168 ATP2B2Q01814 1243 aa11.86□□□□□ -0.51
HERC4-207ENST00000460168 LRCH2Q5VUJ6 765 aa11.86□□□□□ -0.51
HERC4-207ENST00000460168 ATL3Q6DD88 541 aa11.86□□□□□ -0.51
HERC4-207ENST00000460168 MICALL2Q8IY33 904 aa11.86□□□□□ -0.51
HERC4-207ENST00000460168 LRRC47Q8N1G4 583 aaKnown RBP11.86□□□□□ -0.51
HERC4-207ENST00000460168 LEO1Q8WVC0 666 aaPredicted RBP11.86□□□□□ -0.51
HERC4-207ENST00000460168 GOLGA6AQ9NYA3 693 aa11.86□□□□□ -0.51
HERC4-207ENST00000460168 RBM27Q9P2N5 1060 aaKnown RBP11.86□□□□□ -0.51
HERC4-207ENST00000460168 CLIP2Q9UDT6 1046 aa11.86□□□□□ -0.51
HERC4-207ENST00000460168 KCNJ14Q9UNX9 436 aa11.86□□□□□ -0.51
HERC4-207ENST00000460168 BAZ2BQ9UIF8 2168 aaKnown RBP11.85□□□□□ -0.51
HERC4-207ENST00000460168 IGKV6D-41A0A0C4DH26 115 aa11.85□□□□□ -0.51
HERC4-207ENST00000460168 GOLGA8HP0CJ92 632 aa11.85□□□□□ -0.51
HERC4-207ENST00000460168 NOVP48745 357 aa11.85□□□□□ -0.51
HERC4-207ENST00000460168 PKN1Q16512 942 aa11.85□□□□□ -0.51
HERC4-207ENST00000460168 HS1BP3Q53T59 392 aa11.85□□□□□ -0.51
HERC4-207ENST00000460168 FKBP1CQ5VVH2 108 aa11.85□□□□□ -0.51
HERC4-207ENST00000460168 RASGRP2Q7LDG7 609 aa11.85□□□□□ -0.51
HERC4-207ENST00000460168 SYT17Q9BSW7 474 aa11.85□□□□□ -0.51
HERC4-207ENST00000460168 FTOQ9C0B1 505 aaKnown RBP eCLIP11.85□□□□□ -0.51
HERC4-207ENST00000460168 VPS54Q9P1Q0 977 aa11.85□□□□□ -0.51
HERC4-207ENST00000460168 LMNB1P20700 586 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 ZNF280AP59817 542 aaPredicted RBP11.84□□□□□ -0.51
HERC4-207ENST00000460168 MYSM1Q5VVJ2 828 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 TATDN1Q6P1N9 297 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 USP17L2Q6R6M4 530 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 METTL16Q86W50 562 aaKnown RBP11.84□□□□□ -0.51
HERC4-207ENST00000460168 DIS3L2Q8IYB7 885 aaKnown RBP11.84□□□□□ -0.51
HERC4-207ENST00000460168 DPF2Q92785 391 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 USP28Q96RU2 1077 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 TMEM39BQ9GZU3 492 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.84□□□□□ -0.51
HERC4-207ENST00000460168 HERC5Q9UII4 1024 aaKnown RBP11.84□□□□□ -0.51
HERC4-207ENST00000460168 CNOT7Q9UIV1 285 aaKnown RBP11.84□□□□□ -0.51
HERC4-207ENST00000460168 PALM3A6NDB9 673 aaPredicted RBP11.84□□□□□ -0.51
HERC4-207ENST00000460168 KLRF2D3W0D1 207 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 GDF11O95390 407 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 SCG2P13521 617 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 LIG1P18858 919 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 TNNI2P48788 182 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 ABCB5Q2M3G0 1257 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 FAM83AQ86UY5 434 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 NME8Q8N427 588 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 ZBED3Q96IU2 234 aaPredicted RBP11.84□□□□□ -0.51
HERC4-207ENST00000460168 PPP1R9BQ96SB3 815 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 FEZ1Q99689 392 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 LZTS2Q9BRK4 669 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 ZNF541Q9H0D2 1346 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 CNTNAP1P78357 1384 aa11.84□□□□□ -0.51
HERC4-207ENST00000460168 BTBD18B2RXH4 712 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 EGFRP00533 1210 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 PDHBP11177 359 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 U2AF2P26368 475 aaKnown RBP eCLIP11.83□□□□□ -0.52
HERC4-207ENST00000460168 TMEM179Q6ZVK1 233 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 ILDR2Q71H61 639 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 SAMD7Q7Z3H4 446 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 SYAP1Q96A49 352 aaPredicted RBP11.83□□□□□ -0.52
HERC4-207ENST00000460168 KANSL2Q9H9L4 492 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 SUFUQ9UMX1 484 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 GREB1LQ9C091 1923 aaPredicted RBP11.83□□□□□ -0.52
HERC4-207ENST00000460168 MYH4Q9Y623 1939 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 USP17L5A8MUK1 530 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 IPO7O95373 1038 aaKnown RBP11.83□□□□□ -0.52
HERC4-207ENST00000460168 SLFN14P0C7P3 912 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 ICA1Q05084 483 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 CCDC173Q0VFZ6 552 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 TNFAIP1Q13829 316 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 PFKFB3Q16875 520 aaPredicted RBP11.83□□□□□ -0.52
HERC4-207ENST00000460168 SHROOM1Q2M3G4 852 aaPredicted RBP11.83□□□□□ -0.52
HERC4-207ENST00000460168 TBC1D10BQ4KMP7 808 aaPredicted RBP11.83□□□□□ -0.52
HERC4-207ENST00000460168 DNAJC21Q5F1R6 531 aaKnown RBP11.83□□□□□ -0.52
HERC4-207ENST00000460168 CREBRFQ8IUR6 639 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 NOSTRINQ8IVI9 506 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 KCTD17Q8N5Z5 321 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 CABP5Q9NP86 173 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 RSPH14Q9UHP6 348 aa11.83□□□□□ -0.52
HERC4-207ENST00000460168 FRMPD2Q68DX3 1309 aaPredicted RBP11.82□□□□□ -0.52
HERC4-207ENST00000460168 EEF2P13639 858 aaKnown RBP11.82□□□□□ -0.52
HERC4-207ENST00000460168 BIRC2Q13490 618 aa11.82□□□□□ -0.52
HERC4-207ENST00000460168 SEPT2Q15019 361 aa11.82□□□□□ -0.52
HERC4-207ENST00000460168 ASPRV1Q53RT3 343 aa11.82□□□□□ -0.52
HERC4-207ENST00000460168 SPZ1Q9BXG8 430 aa11.82□□□□□ -0.52
HERC4-207ENST00000460168 FOXP1Q9H334 677 aaPredicted RBP11.82□□□□□ -0.52
HERC4-207ENST00000460168 CPVLQ9H3G5 476 aa11.82□□□□□ -0.52
HERC4-207ENST00000460168 TMEM63CQ9P1W3 806 aa11.82□□□□□ -0.52
HERC4-207ENST00000460168 SCAF8Q9UPN6 1271 aaKnown RBP11.82□□□□□ -0.52
HERC4-207ENST00000460168 H7C1D1 291 aa11.82□□□□□ -0.52
HERC4-207ENST00000460168 CYTH3O43739 400 aa11.82□□□□□ -0.52
HERC4-207ENST00000460168 GH2P01242 217 aa11.82□□□□□ -0.52
HERC4-207ENST00000460168 GTF2F1P35269 517 aaKnown RBP eCLIP11.82□□□□□ -0.52
HERC4-207ENST00000460168 KRT2P35908 639 aa11.82□□□□□ -0.52
HERC4-207ENST00000460168 NR5A1Q13285 461 aa11.82□□□□□ -0.52
HERC4-207ENST00000460168 STK38Q15208 465 aa11.82□□□□□ -0.52
HERC4-207ENST00000460168 ZRSR2Q15696 482 aaKnown RBP11.82□□□□□ -0.52
HERC4-207ENST00000460168 KIF4BQ2VIQ3 1234 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms