RNA–Protein interactions for RNA: ENST00000448310.1

CBX4-202, Transcript of chromobox 4, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CBX4, Length 718 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-202ENST00000448310 MKL1Q969V6 931 aa33.69■■■□□ 2.98
CBX4-202ENST00000448310 NRBP1Q9UHY1 535 aa33.69■■■□□ 2.98
CBX4-202ENST00000448310 TTLL1O95922 423 aa33.68■■■□□ 2.98
CBX4-202ENST00000448310 CCDC129Q6ZRS4 1044 aa33.68■■■□□ 2.98
CBX4-202ENST00000448310 XPNPEP3Q9NQH7 507 aa33.68■■■□□ 2.98
CBX4-202ENST00000448310 PRKAG2Q9UGJ0 569 aa33.68■■■□□ 2.98
CBX4-202ENST00000448310 TSPY3P0CV98 308 aa33.67■■■□□ 2.98
CBX4-202ENST00000448310 TSPY8P0CW00 308 aa33.67■■■□□ 2.98
CBX4-202ENST00000448310 RARBP10826 455 aa33.67■■■□□ 2.98
CBX4-202ENST00000448310 PDE4BQ07343 736 aa33.67■■■□□ 2.98
CBX4-202ENST00000448310 PPARAQ07869 468 aa33.67■■■□□ 2.98
CBX4-202ENST00000448310 TRIM60Q495X7 471 aa33.67■■■□□ 2.98
CBX4-202ENST00000448310 DEFB123Q8N688 67 aa33.67■■■□□ 2.98
CBX4-202ENST00000448310 NEDD1Q8NHV4 660 aa33.67■■■□□ 2.98
CBX4-202ENST00000448310 LENG1Q96BZ8 264 aaPredicted RBP33.67■■■□□ 2.98
CBX4-202ENST00000448310 CRBNQ96SW2 442 aa33.67■■■□□ 2.98
CBX4-202ENST00000448310 RAVER2Q9HCJ3 691 aaKnown RBP33.67■■■□□ 2.98
CBX4-202ENST00000448310 CTDP1Q9Y5B0 961 aaPredicted RBP33.67■■■□□ 2.98
CBX4-202ENST00000448310 SALL3Q9BXA9 1300 aa33.67■■■□□ 2.98
CBX4-202ENST00000448310 PLIN4Q96Q06 1357 aa33.67■■■□□ 2.98
CBX4-202ENST00000448310 MCM3APO60318 1980 aa33.67■■■□□ 2.98
CBX4-202ENST00000448310 ZBED4O75132 1171 aa33.66■■■□□ 2.98
CBX4-202ENST00000448310 PGK1P00558 417 aa33.66■■■□□ 2.98
CBX4-202ENST00000448310 ZNF865P0CJ78 1059 aaPredicted RBP33.66■■■□□ 2.98
CBX4-202ENST00000448310 GPR153Q6NV75 609 aa33.66■■■□□ 2.98
CBX4-202ENST00000448310 DDX11Q96FC9 970 aa33.66■■■□□ 2.98
CBX4-202ENST00000448310 PRDM5Q9NQX1 630 aaPredicted RBP33.66■■■□□ 2.98
CBX4-202ENST00000448310 TFAP4Q01664 338 aa33.65■■■□□ 2.98
CBX4-202ENST00000448310 SNX17Q15036 470 aa33.65■■■□□ 2.98
CBX4-202ENST00000448310 SLFN13Q68D06 897 aa33.65■■■□□ 2.98
CBX4-202ENST00000448310 GMCL1P1Q8NEA9 526 aa33.65■■■□□ 2.98
CBX4-202ENST00000448310 FEM1BQ9UK73 627 aa33.65■■■□□ 2.98
CBX4-202ENST00000448310 SLC3A2P08195 630 aaKnown RBP33.64■■■□□ 2.98
CBX4-202ENST00000448310 ANKRD45Q5TZF3 282 aa33.64■■■□□ 2.98
CBX4-202ENST00000448310 CHMP4CQ96CF2 233 aa33.64■■■□□ 2.98
CBX4-202ENST00000448310 SLC38A10Q9HBR0 1119 aa33.64■■■□□ 2.98
CBX4-202ENST00000448310 CNPY2Q9Y2B0 182 aa33.64■■■□□ 2.98
CBX4-202ENST00000448310 COL6A3P12111 3177 aa33.64■■■□□ 2.98
CBX4-202ENST00000448310 ATP2A1O14983 1001 aa33.63■■■□□ 2.97
CBX4-202ENST00000448310 FOXP2O15409 715 aa33.63■■■□□ 2.97
CBX4-202ENST00000448310 ISY1Q9ULR0 285 aaKnown RBP33.63■■■□□ 2.97
CBX4-202ENST00000448310 SYNPO2Q9UMS6 1093 aa33.63■■■□□ 2.97
CBX4-202ENST00000448310 PHF24Q9UPV7 400 aa33.63■■■□□ 2.97
CBX4-202ENST00000448310 DNAJC25-GNG10A0A024R161 153 aa33.62■■■□□ 2.97
CBX4-202ENST00000448310 BMP3P12645 472 aa33.62■■■□□ 2.97
CBX4-202ENST00000448310 AKR1A1P14550 325 aa33.62■■■□□ 2.97
CBX4-202ENST00000448310 INCENPQ9NQS7 918 aa33.62■■■□□ 2.97
CBX4-202ENST00000448310 ZBTB47Q9UFB7 747 aaPredicted RBP33.62■■■□□ 2.97
CBX4-202ENST00000448310 CTDSPL2Q05D32 466 aa33.61■■■□□ 2.97
CBX4-202ENST00000448310 RNF180Q86T96 592 aa33.61■■■□□ 2.97
CBX4-202ENST00000448310 SNAI1O95863 264 aaPredicted RBP33.6■■■□□ 2.97
CBX4-202ENST00000448310 SH3RF1Q7Z6J0 888 aa33.6■■■□□ 2.97
CBX4-202ENST00000448310 PDLIM7Q9NR12 457 aa33.6■■■□□ 2.97
CBX4-202ENST00000448310 SYNGAP1Q96PV0 1343 aa33.59■■■□□ 2.97
CBX4-202ENST00000448310 TMEM232C9JQI7 657 aa33.59■■■□□ 2.97
CBX4-202ENST00000448310 VPS53Q5VIR6 699 aa33.59■■■□□ 2.97
CBX4-202ENST00000448310 MSL3Q8N5Y2 521 aaKnown RBP33.59■■■□□ 2.97
CBX4-202ENST00000448310 ZHX1Q9UKY1 873 aaPredicted RBP33.59■■■□□ 2.97
CBX4-202ENST00000448310 DDX52Q9Y2R4 599 aaKnown RBP eCLIP33.59■■■□□ 2.97
CBX4-202ENST00000448310 ANKRD35Q8N283 1001 aa33.58■■■□□ 2.97
CBX4-202ENST00000448310 HOMER2Q9NSB8 354 aa33.58■■■□□ 2.97
CBX4-202ENST00000448310 ADAMTS4O75173 837 aa33.57■■■□□ 2.96
CBX4-202ENST00000448310 TLE2Q04725 743 aa33.57■■■□□ 2.96
CBX4-202ENST00000448310 C1orf53Q5VUE5 145 aa33.57■■■□□ 2.96
CBX4-202ENST00000448310 MAMDC4Q6UXC1 1216 aa33.57■■■□□ 2.96
CBX4-202ENST00000448310 BADQ92934 168 aa33.57■■■□□ 2.96
CBX4-202ENST00000448310 FGD4Q96M96 766 aa33.57■■■□□ 2.96
CBX4-202ENST00000448310 TACC3Q9Y6A5 838 aa33.57■■■□□ 2.96
CBX4-202ENST00000448310 SYNRGQ9UMZ2 1314 aa33.56■■■□□ 2.96
CBX4-202ENST00000448310 A0A1W2PQ45 241 aaPredicted RBP33.56■■■□□ 2.96
CBX4-202ENST00000448310 A0A1W2PQY0 241 aa33.56■■■□□ 2.96
CBX4-202ENST00000448310 TRIM43BA6NCK2 446 aa33.56■■■□□ 2.96
CBX4-202ENST00000448310 TSPY2A6NKD2 308 aa33.56■■■□□ 2.96
CBX4-202ENST00000448310 NMT2O60551 498 aa33.56■■■□□ 2.96
CBX4-202ENST00000448310 MCCP23508 829 aa33.56■■■□□ 2.96
CBX4-202ENST00000448310 STAT2P52630 851 aa33.56■■■□□ 2.96
CBX4-202ENST00000448310 OAZ1P54368 228 aa33.56■■■□□ 2.96
CBX4-202ENST00000448310 CHST13Q8NET6 341 aa33.56■■■□□ 2.96
CBX4-202ENST00000448310 TRIM43Q96BQ3 446 aaPredicted RBP33.56■■■□□ 2.96
CBX4-202ENST00000448310 EVI5LQ96CN4 794 aa33.56■■■□□ 2.96
CBX4-202ENST00000448310 MTMR10Q9NXD2 777 aa33.56■■■□□ 2.96
CBX4-202ENST00000448310 FBXO40Q9UH90 709 aa33.56■■■□□ 2.96
CBX4-202ENST00000448310 FAM184BQ9ULE4 1060 aa33.56■■■□□ 2.96
CBX4-202ENST00000448310 STX8Q9UNK0 236 aa33.56■■■□□ 2.96
CBX4-202ENST00000448310 SLC1A4P43007 532 aa33.55■■■□□ 2.96
CBX4-202ENST00000448310 PDE1AP54750 535 aa33.55■■■□□ 2.96
CBX4-202ENST00000448310 IKQ13123 557 aaPredicted RBP33.55■■■□□ 2.96
CBX4-202ENST00000448310 DHX30Q7L2E3 1194 aaKnown RBP eCLIP33.55■■■□□ 2.961e-13■□□□□ 9.5
CBX4-202ENST00000448310 RASGRP2Q7LDG7 609 aa33.55■■■□□ 2.96
CBX4-202ENST00000448310 SLC17A8Q8NDX2 589 aa33.55■■■□□ 2.96
CBX4-202ENST00000448310 IL17RBQ9NRM6 502 aa33.55■■■□□ 2.96
CBX4-202ENST00000448310 LAMA2P24043 3122 aaKnown RBP33.55■■■□□ 2.96
CBX4-202ENST00000448310 ZNF467Q7Z7K2 595 aaPredicted RBP33.54■■■□□ 2.96
CBX4-202ENST00000448310 GMCL1Q96IK5 515 aa33.54■■■□□ 2.96
CBX4-202ENST00000448310 CDKN2AIPQ9NXV6 580 aaPredicted RBP33.54■■■□□ 2.96
CBX4-202ENST00000448310 SHHQ15465 462 aa33.53■■■□□ 2.96
CBX4-202ENST00000448310 C9orf50Q5SZB4 431 aa33.53■■■□□ 2.96
CBX4-202ENST00000448310 KCTD1Q719H9 257 aa33.53■■■□□ 2.96
CBX4-202ENST00000448310 AGBL1Q96MI9 1066 aa33.53■■■□□ 2.96
CBX4-202ENST00000448310 IRX5P78411 483 aaPredicted RBP33.52■■■□□ 2.96
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms