RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ADORA2AP29274 412 aa17.9■□□□□ 0.46
LIMS3-201ENST00000437679 STAT2P52630 851 aa17.9■□□□□ 0.46
LIMS3-201ENST00000437679 TRIM32Q13049 653 aa17.9■□□□□ 0.46
LIMS3-201ENST00000437679 CCL14Q16627 93 aa17.9■□□□□ 0.46
LIMS3-201ENST00000437679 MFSD14CQ5VZR4 134 aa17.9■□□□□ 0.46
LIMS3-201ENST00000437679 IQCA1Q86XH1 822 aa17.9■□□□□ 0.46
LIMS3-201ENST00000437679 ABRAQ8N0Z2 381 aa17.9■□□□□ 0.46
LIMS3-201ENST00000437679 U2AF1L4Q8WU68 220 aaKnown RBP17.9■□□□□ 0.46
LIMS3-201ENST00000437679 TTC14Q96N46 770 aa17.9■□□□□ 0.46
LIMS3-201ENST00000437679 DEFB118Q96PH6 123 aa17.9■□□□□ 0.46
LIMS3-201ENST00000437679 TMEM47Q9BQJ4 181 aa17.9■□□□□ 0.46
LIMS3-201ENST00000437679 TEX13BQ9BXU2 312 aa17.9■□□□□ 0.46
LIMS3-201ENST00000437679 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.9■□□□□ 0.46
LIMS3-201ENST00000437679 PAK6Q9NQU5 681 aaPredicted RBP17.9■□□□□ 0.46
LIMS3-201ENST00000437679 SLC5A4Q9NY91 659 aa17.9■□□□□ 0.46
LIMS3-201ENST00000437679 SGSM2O43147 1006 aa17.89■□□□□ 0.45
LIMS3-201ENST00000437679 FDX1P10109 184 aa17.89■□□□□ 0.45
LIMS3-201ENST00000437679 CCDC96Q2M329 555 aa17.89■□□□□ 0.45
LIMS3-201ENST00000437679 CCDC178Q5BJE1 867 aa17.89■□□□□ 0.45
LIMS3-201ENST00000437679 SNRNP48Q6IEG0 339 aaKnown RBP17.89■□□□□ 0.45
LIMS3-201ENST00000437679 RCSD1Q6JBY9 416 aa17.89■□□□□ 0.45
LIMS3-201ENST00000437679 KCTD1Q719H9 257 aa17.89■□□□□ 0.45
LIMS3-201ENST00000437679 CPXCR1Q8N123 301 aa17.89■□□□□ 0.45
LIMS3-201ENST00000437679 DCAF4Q8WV16 495 aa17.89■□□□□ 0.45
LIMS3-201ENST00000437679 SHISA4Q96DD7 197 aa17.89■□□□□ 0.45
LIMS3-201ENST00000437679 MMP19Q99542 508 aa17.89■□□□□ 0.45
LIMS3-201ENST00000437679 KRT23Q9C075 422 aa17.89■□□□□ 0.45
LIMS3-201ENST00000437679 CNNM2Q9H8M5 875 aa17.89■□□□□ 0.45
LIMS3-201ENST00000437679 SLC38A10Q9HBR0 1119 aa17.89■□□□□ 0.45
LIMS3-201ENST00000437679 U3KPZ7 1027 aaPredicted RBP17.89■□□□□ 0.45
LIMS3-201ENST00000437679 ZNF236Q9UL36 1845 aa17.88■□□□□ 0.45
LIMS3-201ENST00000437679 ZNFX1Q9P2E3 1918 aaKnown RBP17.88■□□□□ 0.45
LIMS3-201ENST00000437679 B4E1Z4 1266 aa17.88■□□□□ 0.45
LIMS3-201ENST00000437679 ATP2A1O14983 1001 aa17.88■□□□□ 0.45
LIMS3-201ENST00000437679 PLA2G6O60733 806 aa17.88■□□□□ 0.45
LIMS3-201ENST00000437679 KDM4AO75164 1064 aa17.88■□□□□ 0.45
LIMS3-201ENST00000437679 TFRCP02786 760 aaKnown RBP17.88■□□□□ 0.45
LIMS3-201ENST00000437679 SLC4A3P48751 1232 aa17.88■□□□□ 0.45
LIMS3-201ENST00000437679 KCTD2Q14681 263 aa17.88■□□□□ 0.45
LIMS3-201ENST00000437679 MAP3K21Q5TCX8 1036 aa17.88■□□□□ 0.45
LIMS3-201ENST00000437679 NPLOC4Q8TAT6 608 aa17.88■□□□□ 0.45
LIMS3-201ENST00000437679 OAZ1P54368 228 aa17.87■□□□□ 0.45
LIMS3-201ENST00000437679 PTH1RQ03431 593 aa17.87■□□□□ 0.45
LIMS3-201ENST00000437679 CACNB2Q08289 660 aaPredicted RBP17.87■□□□□ 0.45
LIMS3-201ENST00000437679 BMP2KLQ5H9B9 411 aa17.87■□□□□ 0.45
LIMS3-201ENST00000437679 KIAA1211Q6ZU35 1233 aa17.87■□□□□ 0.45
LIMS3-201ENST00000437679 SKAP1Q86WV1 359 aa17.87■□□□□ 0.45
LIMS3-201ENST00000437679 ZKSCAN3Q9BRR0 538 aa17.87■□□□□ 0.45
LIMS3-201ENST00000437679 RAVER2Q9HCJ3 691 aaKnown RBP17.87■□□□□ 0.45
LIMS3-201ENST00000437679 FLRT1Q9NZU1 646 aa17.87■□□□□ 0.45
LIMS3-201ENST00000437679 COBLO75128 1261 aa17.86■□□□□ 0.45
LIMS3-201ENST00000437679 TRDNQ13061 729 aa17.86■□□□□ 0.45
LIMS3-201ENST00000437679 DGKHQ86XP1 1220 aa17.86■□□□□ 0.45
LIMS3-201ENST00000437679 ZSWIM5Q9P217 1185 aa17.86■□□□□ 0.45
LIMS3-201ENST00000437679 TNRC18O15417 2968 aaPredicted RBP17.86■□□□□ 0.45
LIMS3-201ENST00000437679 CENPBP07199 599 aaPredicted RBP17.85■□□□□ 0.45
LIMS3-201ENST00000437679 OLFML2BQ68BL8 750 aa17.85■□□□□ 0.45
LIMS3-201ENST00000437679 RASGRP2Q7LDG7 609 aa17.85■□□□□ 0.45
LIMS3-201ENST00000437679 ZSCAN10Q96SZ4 725 aaPredicted RBP17.85■□□□□ 0.45
LIMS3-201ENST00000437679 UBAC1Q9BSL1 405 aa17.85■□□□□ 0.45
LIMS3-201ENST00000437679 CRISPLD2Q9H0B8 497 aa17.85■□□□□ 0.45
LIMS3-201ENST00000437679 PRR12Q9ULL5 1215 aa17.85■□□□□ 0.45
LIMS3-201ENST00000437679 RIPK3Q9Y572 518 aa17.85■□□□□ 0.45
LIMS3-201ENST00000437679 FRMPD2Q68DX3 1309 aaPredicted RBP17.84■□□□□ 0.45
LIMS3-201ENST00000437679 FARP2O94887 1054 aaPredicted RBP17.84■□□□□ 0.45
LIMS3-201ENST00000437679 PDHBP11177 359 aa17.84■□□□□ 0.45
LIMS3-201ENST00000437679 CCND3P30281 292 aaPredicted RBP17.84■□□□□ 0.45
LIMS3-201ENST00000437679 CYP2C19P33261 490 aa17.84■□□□□ 0.45
LIMS3-201ENST00000437679 CHST13Q8NET6 341 aa17.84■□□□□ 0.45
LIMS3-201ENST00000437679 ESYT1Q9BSJ8 1104 aa17.84■□□□□ 0.45
LIMS3-201ENST00000437679 KAT14Q9H8E8 782 aa17.84■□□□□ 0.45
LIMS3-201ENST00000437679 FBXO40Q9UH90 709 aa17.84■□□□□ 0.45
LIMS3-201ENST00000437679 MKI67P46013 3256 aaKnown RBP17.84■□□□□ 0.45
LIMS3-201ENST00000437679 TNKSO95271 1327 aa17.83■□□□□ 0.44
LIMS3-201ENST00000437679 PGK2P07205 417 aa17.83■□□□□ 0.44
LIMS3-201ENST00000437679 CYP21A2P08686 494 aa17.83■□□□□ 0.44
LIMS3-201ENST00000437679 SYDE2Q5VT97 1194 aa17.83■□□□□ 0.44
LIMS3-201ENST00000437679 BTNL9Q6UXG8 535 aa17.83■□□□□ 0.44
LIMS3-201ENST00000437679 ANKS1AQ92625 1134 aa17.83■□□□□ 0.44
LIMS3-201ENST00000437679 MAP4K1Q92918 833 aa17.83■□□□□ 0.44
LIMS3-201ENST00000437679 DDX11Q96FC9 970 aa17.83■□□□□ 0.44
LIMS3-201ENST00000437679 MAML3Q96JK9 1138 aa17.83■□□□□ 0.44
LIMS3-201ENST00000437679 GPCPD1Q9NPB8 672 aa17.83■□□□□ 0.44
LIMS3-201ENST00000437679 DIS3Q9Y2L1 958 aaKnown RBP17.83■□□□□ 0.44
LIMS3-201ENST00000437679 RBM8AQ9Y5S9 174 aaKnown RBP17.83■□□□□ 0.44
LIMS3-201ENST00000437679 CNGA1P29973 690 aa17.82■□□□□ 0.44
LIMS3-201ENST00000437679 SLC16A2P36021 539 aa17.82■□□□□ 0.44
LIMS3-201ENST00000437679 ZNF543Q08ER8 600 aa17.82■□□□□ 0.44
LIMS3-201ENST00000437679 TKFCQ3LXA3 575 aa17.82■□□□□ 0.44
LIMS3-201ENST00000437679 TTBK2Q6IQ55 1244 aa17.82■□□□□ 0.44
LIMS3-201ENST00000437679 CCDC174Q6PII3 467 aa17.82■□□□□ 0.44
LIMS3-201ENST00000437679 CASC1Q6TDU7 716 aa17.82■□□□□ 0.44
LIMS3-201ENST00000437679 RALYLQ86SE5 291 aaKnown RBP17.82■□□□□ 0.44
LIMS3-201ENST00000437679 ANKRD35Q8N283 1001 aa17.82■□□□□ 0.44
LIMS3-201ENST00000437679 ENAHQ8N8S7 591 aaPredicted RBP17.82■□□□□ 0.44
LIMS3-201ENST00000437679 ANKLE1Q8NAG6 615 aa17.82■□□□□ 0.44
LIMS3-201ENST00000437679 PNMA1Q8ND90 353 aa17.82■□□□□ 0.44
LIMS3-201ENST00000437679 HOMER2Q9NSB8 354 aa17.82■□□□□ 0.44
LIMS3-201ENST00000437679 PLXNA1Q9UIW2 1896 aa17.82■□□□□ 0.44
LIMS3-201ENST00000437679 ZNF536O15090 1300 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms