RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 DRC3Q9H069 523 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 NUB1Q9Y5A7 615 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 ARHGAP25P42331 645 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 KLHL30Q0D2K2 578 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 NOLC1Q14978 699 aaKnown RBP eCLIP7.52□□□□□ -1.21
SCN1A-204ENST00000423058 BBOF1Q8ND07 529 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 APPBP2Q92624 585 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 INTS4Q96HW7 963 aaKnown RBP7.52□□□□□ -1.21
SCN1A-204ENST00000423058 BABAM1Q9NWV8 329 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 A2MP01023 1474 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 ANXA1P04083 346 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 SRRM1Q8IYB3 904 aaKnown RBP7.51□□□□□ -1.21
SCN1A-204ENST00000423058 MLKLQ8NB16 471 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 N4BP2L2Q92802 583 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-204ENST00000423058 TSPYL2Q9H2G4 693 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-204ENST00000423058 VPS37BQ9H9H4 285 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 PRDM10Q9NQV6 1147 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 IMPACTQ9P2X3 320 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 MYO1AQ9UBC5 1043 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 ABT1Q9ULW3 272 aaKnown RBP7.51□□□□□ -1.21
SCN1A-204ENST00000423058 AKT3Q9Y243 479 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 PHEXP78562 749 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 TRIM42Q8IWZ5 723 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 CTAGE3PQ8IX95 158 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 PNMA3Q9UL41 463 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 M0R2C6 588 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 RAPH1Q70E73 1250 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 FASTKD5Q7L8L6 764 aaKnown RBP7.51□□□□□ -1.21
SCN1A-204ENST00000423058 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-204ENST00000423058 FAM71BQ8TC56 605 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 TEKT3Q9BXF9 490 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 KCNH3Q9ULD8 1083 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 A0A1B0GUL7 405 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 RNMTO43148 476 aaKnown RBP7.51□□□□□ -1.21
SCN1A-204ENST00000423058 EFCAB14O75071 495 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 RNF40O75150 1001 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 BPIFB4P59827 614 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 KCTD2Q14681 263 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 CCDC38Q502W7 563 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 RNF219Q5W0B1 726 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-204ENST00000423058 GALNT17Q6IS24 598 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 TMTC1Q8IUR5 882 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 SEPT8Q92599 483 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 MYO5CQ9NQX4 1742 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 FAM95CA0A1B0GW59 222 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 USP14P54578 494 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 EVCP57679 992 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 MEIS3Q99687 375 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 EDEM3Q9BZQ6 932 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 VPS16Q9H269 839 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 DISC1Q9NRI5 854 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 ZNF212Q9UDV6 495 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 B4E1Z4 1266 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 ADALQ6DHV7 355 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 MIS18BP1Q6P0N0 1132 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 CCDC186Q7Z3E2 898 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 TRERF1Q96PN7 1200 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 USP40Q9NVE5 1235 aa7.51□□□□□ -1.21
SCN1A-204ENST00000423058 NVLO15381 856 aaKnown RBP7.5□□□□□ -1.21
SCN1A-204ENST00000423058 CERKLQ49MI3 558 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-204ENST00000423058 NUDT18Q6ZVK8 323 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-204ENST00000423058 SESTD1Q86VW0 696 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 TGFBRAP1Q8WUH2 860 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 ATP6V0A1Q93050 837 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 METTL22Q9BUU2 404 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-204ENST00000423058 PPP1R12CQ9BZL4 782 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 THEGQ9P2T0 379 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 PLXNC1O60486 1568 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 FAM160A1Q05DH4 1040 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 PNMA8AQ86V59 439 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-204ENST00000423058 MICAL1Q8TDZ2 1067 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 ATP6V1E2Q96A05 226 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 ZBED2Q9BTP6 218 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 SPECC1L-ADORA2AF8WAN1 911 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 MED7O43513 233 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 PDE1CQ14123 709 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-204ENST00000423058 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.5□□□□□ -1.21
SCN1A-204ENST00000423058 CDHR1Q96JP9 859 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 TBC1D32Q96NH3 1257 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 ARMT1Q9H993 441 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 EFCC1Q9HA90 598 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 ABCA10Q8WWZ4 1543 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 SOS2Q07890 1332 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-204ENST00000423058 ADGRF5Q8IZF2 1346 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 SMIM24O75264 130 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 RXRAP19793 462 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 RPS6KB1P23443 525 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 ANO1Q5XXA6 986 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 TRIM11Q96F44 468 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 NEUROG2Q9H2A3 272 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 TRIM45Q9H8W5 580 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-204ENST00000423058 HYOU1Q9Y4L1 999 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 TTI1O43156 1089 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 NOP14P78316 857 aaKnown RBP7.5□□□□□ -1.21
SCN1A-204ENST00000423058 MYO1EQ12965 1108 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 XKR9Q5GH70 373 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 PHLDB3Q6NSJ2 640 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 IP6K1Q92551 441 aa7.5□□□□□ -1.21
SCN1A-204ENST00000423058 NACC1Q96RE7 527 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms