RNA–Protein interactions for RNA: ENST00000413582.6

RFFL-203, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5 BASIC

Gene RFFL, Length 1,217 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-203ENST00000413582 TTF1Q15361 905 aaPredicted RBP11.55□□□□□ -0.56
RFFL-203ENST00000413582 TMEM240Q5SV17 173 aa11.55□□□□□ -0.56
RFFL-203ENST00000413582 SLC9C2Q5TAH2 1124 aa11.55□□□□□ -0.56
RFFL-203ENST00000413582 PPM1EQ8WY54 764 aa11.55□□□□□ -0.56
RFFL-203ENST00000413582 MROH7Q68CQ1 1323 aa11.55□□□□□ -0.56
RFFL-203ENST00000413582 ZBED9Q6R2W3 1325 aa11.55□□□□□ -0.56
RFFL-203ENST00000413582 SYNGAP1Q96PV0 1343 aa11.55□□□□□ -0.56
RFFL-203ENST00000413582 ZNF532Q9HCE3 1301 aa11.55□□□□□ -0.56
RFFL-203ENST00000413582 MYH7P12883 1935 aa11.54□□□□□ -0.56
RFFL-203ENST00000413582 ADCY6O43306 1168 aa11.54□□□□□ -0.56
RFFL-203ENST00000413582 SNAI1O95863 264 aaPredicted RBP11.54□□□□□ -0.56
RFFL-203ENST00000413582 CSF2RAP15509 400 aa11.54□□□□□ -0.56
RFFL-203ENST00000413582 CDK7P50613 346 aa11.54□□□□□ -0.56
RFFL-203ENST00000413582 KCNA10Q16322 511 aa11.54□□□□□ -0.56
RFFL-203ENST00000413582 ZKSCAN2Q63HK3 967 aa11.54□□□□□ -0.56
RFFL-203ENST00000413582 CCDC129Q6ZRS4 1044 aa11.54□□□□□ -0.56
RFFL-203ENST00000413582 MSL3Q8N5Y2 521 aaKnown RBP11.54□□□□□ -0.56
RFFL-203ENST00000413582 CCDC17Q96LX7 622 aa11.54□□□□□ -0.56
RFFL-203ENST00000413582 REV3LO60673 3130 aa11.54□□□□□ -0.56
RFFL-203ENST00000413582 ELP1O95163 1332 aa11.54□□□□□ -0.56
RFFL-203ENST00000413582 TCF20Q9UGU0 1960 aaKnown RBP11.54□□□□□ -0.56
RFFL-203ENST00000413582 DNAJC25-GNG10A0A024R161 153 aa11.53□□□□□ -0.56
RFFL-203ENST00000413582 CYP2D7A0A087X1C5 515 aa11.53□□□□□ -0.56
RFFL-203ENST00000413582 PRKAB2O43741 272 aa11.53□□□□□ -0.56
RFFL-203ENST00000413582 DUSP11O75319 330 aaKnown RBP11.53□□□□□ -0.56
RFFL-203ENST00000413582 CENPBP07199 599 aaPredicted RBP11.53□□□□□ -0.56
RFFL-203ENST00000413582 EEF2P13639 858 aaKnown RBP11.53□□□□□ -0.56
RFFL-203ENST00000413582 PLA2G5P39877 138 aa11.53□□□□□ -0.56
RFFL-203ENST00000413582 IRX5P78411 483 aaPredicted RBP11.53□□□□□ -0.56
RFFL-203ENST00000413582 MRPS5P82675 430 aaKnown RBP11.53□□□□□ -0.56
RFFL-203ENST00000413582 FAM83BQ5T0W9 1011 aa11.53□□□□□ -0.56
RFFL-203ENST00000413582 CEP85Q6P2H3 762 aa11.53□□□□□ -0.56
RFFL-203ENST00000413582 PSRC1Q6PGN9 363 aaPredicted RBP11.53□□□□□ -0.56
RFFL-203ENST00000413582 CCDC174Q6PII3 467 aa11.53□□□□□ -0.56
RFFL-203ENST00000413582 MAMDC4Q6UXC1 1216 aa11.53□□□□□ -0.56
RFFL-203ENST00000413582 FAM126BQ8IXS8 530 aa11.53□□□□□ -0.56
RFFL-203ENST00000413582 GLT1D1Q96MS3 346 aa11.53□□□□□ -0.56
RFFL-203ENST00000413582 YTHDC1Q96MU7 727 aaKnown RBP11.53□□□□□ -0.56
RFFL-203ENST00000413582 UHRF1Q96T88 793 aaPredicted RBP11.53□□□□□ -0.56
RFFL-203ENST00000413582 UPF3AQ9H1J1 476 aaKnown RBP11.53□□□□□ -0.56
RFFL-203ENST00000413582 ARMT1Q9H993 441 aa11.53□□□□□ -0.56
RFFL-203ENST00000413582 ZHX1Q9UKY1 873 aaPredicted RBP11.53□□□□□ -0.56
RFFL-203ENST00000413582 FAM184BQ9ULE4 1060 aa11.53□□□□□ -0.56
RFFL-203ENST00000413582 EXOC6BQ9Y2D4 811 aa11.53□□□□□ -0.56
RFFL-203ENST00000413582 PRRC2BQ5JSZ5 2229 aaKnown RBP11.52□□□□□ -0.56
RFFL-203ENST00000413582 LRRC37A2A6NM11 1700 aa11.52□□□□□ -0.56
RFFL-203ENST00000413582 GOLIM4O00461 696 aa11.52□□□□□ -0.57
RFFL-203ENST00000413582 MBD4O95243 580 aa11.52□□□□□ -0.57
RFFL-203ENST00000413582 ACRP10323 421 aa11.52□□□□□ -0.57
RFFL-203ENST00000413582 CDK8P49336 464 aa11.52□□□□□ -0.57
RFFL-203ENST00000413582 C12orf60Q5U649 245 aa11.52□□□□□ -0.57
RFFL-203ENST00000413582 C16orf86Q6ZW13 317 aa11.52□□□□□ -0.57
RFFL-203ENST00000413582 ZNF365Q70YC5 407 aa11.52□□□□□ -0.57
RFFL-203ENST00000413582 ERC1Q8IUD2 1116 aa11.52□□□□□ -0.57
RFFL-203ENST00000413582 TMEM199Q8N511 208 aa11.52□□□□□ -0.57
RFFL-203ENST00000413582 TEX13BQ9BXU2 312 aa11.52□□□□□ -0.57
RFFL-203ENST00000413582 PPP1R12CQ9BZL4 782 aa11.52□□□□□ -0.57
RFFL-203ENST00000413582 KANSL2Q9H9L4 492 aa11.52□□□□□ -0.57
RFFL-203ENST00000413582 GOPCQ9HD26 462 aa11.52□□□□□ -0.57
RFFL-203ENST00000413582 MYH4Q9Y623 1939 aa11.51□□□□□ -0.57
RFFL-203ENST00000413582 A0A0U1RQG5 324 aaPredicted RBP11.51□□□□□ -0.57
RFFL-203ENST00000413582 ARVCFO00192 962 aa11.51□□□□□ -0.57
RFFL-203ENST00000413582 ASGR1P07306 291 aa11.51□□□□□ -0.57
RFFL-203ENST00000413582 C6orf222P0C671 652 aaPredicted RBP11.51□□□□□ -0.57
RFFL-203ENST00000413582 RLBP1P12271 317 aa11.51□□□□□ -0.57
RFFL-203ENST00000413582 RAB30Q15771 203 aa11.51□□□□□ -0.57
RFFL-203ENST00000413582 CCDC85BQ15834 202 aaPredicted RBP11.51□□□□□ -0.57
RFFL-203ENST00000413582 SLFNL1Q499Z3 407 aa11.51□□□□□ -0.57
RFFL-203ENST00000413582 SNRNP48Q6IEG0 339 aaKnown RBP11.51□□□□□ -0.57
RFFL-203ENST00000413582 ZNF467Q7Z7K2 595 aaPredicted RBP11.51□□□□□ -0.57
RFFL-203ENST00000413582 ITPRIPQ8IWB1 547 aa11.51□□□□□ -0.57
RFFL-203ENST00000413582 PCSK9Q8NBP7 692 aaKnown RBP11.51□□□□□ -0.57
RFFL-203ENST00000413582 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.51□□□□□ -0.57
RFFL-203ENST00000413582 HERVK_113Q902F9 699 aa11.51□□□□□ -0.57
RFFL-203ENST00000413582 FGD4Q96M96 766 aa11.51□□□□□ -0.57
RFFL-203ENST00000413582 DNAJC2Q99543 621 aaKnown RBP11.51□□□□□ -0.57
RFFL-203ENST00000413582 NUP88Q99567 741 aaPredicted RBP11.51□□□□□ -0.57
RFFL-203ENST00000413582 IL1RAPL2Q9NP60 686 aa11.51□□□□□ -0.57
RFFL-203ENST00000413582 ATP8A2Q9NTI2 1148 aa11.51□□□□□ -0.57
RFFL-203ENST00000413582 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.51□□□□□ -0.57
RFFL-203ENST00000413582 CXXC1Q9P0U4 656 aaPredicted RBP11.51□□□□□ -0.57
RFFL-203ENST00000413582 YBX2Q9Y2T7 364 aaKnown RBP11.51□□□□□ -0.57
RFFL-203ENST00000413582 RIPK3Q9Y572 518 aa11.51□□□□□ -0.57
RFFL-203ENST00000413582 TRANK1O15050 2925 aa11.51□□□□□ -0.57
RFFL-203ENST00000413582 USP17L12C9JPN9 530 aa11.5□□□□□ -0.57
RFFL-203ENST00000413582 USP17L21D6R901 530 aa11.5□□□□□ -0.57
RFFL-203ENST00000413582 APBB1O00213 710 aa11.5□□□□□ -0.57
RFFL-203ENST00000413582 CTAGE5O15320 804 aa11.5□□□□□ -0.57
RFFL-203ENST00000413582 CD4P01730 458 aa11.5□□□□□ -0.57
RFFL-203ENST00000413582 IGFBP4P22692 258 aa11.5□□□□□ -0.57
RFFL-203ENST00000413582 ADD2P35612 726 aa11.5□□□□□ -0.57
RFFL-203ENST00000413582 GJA9P57773 515 aa11.5□□□□□ -0.57
RFFL-203ENST00000413582 ACVR2BQ13705 512 aa11.5□□□□□ -0.57
RFFL-203ENST00000413582 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.5□□□□□ -0.57
RFFL-203ENST00000413582 FTSJ3Q8IY81 847 aaKnown RBP11.5□□□□□ -0.57
RFFL-203ENST00000413582 NECAB3Q96P71 396 aaPredicted RBP11.5□□□□□ -0.57
RFFL-203ENST00000413582 SLF1Q9BQI6 1058 aa11.5□□□□□ -0.57
RFFL-203ENST00000413582 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.5□□□□□ -0.57
RFFL-203ENST00000413582 NKX2-4Q9H2Z4 354 aa11.5□□□□□ -0.57
RFFL-203ENST00000413582 IL23AQ9NPF7 189 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms