RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 CYTH3O43739 400 aa18.58■□□□□ 0.57
HMGA1-204ENST00000401473 PLA2G6O60733 806 aa18.58■□□□□ 0.57
HMGA1-204ENST00000401473 CALM1P0DP23 149 aa18.58■□□□□ 0.57
HMGA1-204ENST00000401473 CALM2P0DP24 149 aa18.58■□□□□ 0.57
HMGA1-204ENST00000401473 CALM3P0DP25 149 aa18.58■□□□□ 0.57
HMGA1-204ENST00000401473 DSG3P32926 999 aa18.58■□□□□ 0.57
HMGA1-204ENST00000401473 IRX3P78415 501 aaPredicted RBP18.58■□□□□ 0.57
HMGA1-204ENST00000401473 STK3Q13188 491 aa18.58■□□□□ 0.57
HMGA1-204ENST00000401473 PABPC4Q13310 644 aaKnown RBP eCLIP18.58■□□□□ 0.576e-22■■■■□ 23.3
HMGA1-204ENST00000401473 TAF1CQ15572 869 aaPredicted RBP18.58■□□□□ 0.57
HMGA1-204ENST00000401473 PRPF38AQ8NAV1 312 aaKnown RBP18.58■□□□□ 0.57
HMGA1-204ENST00000401473 NCOA5Q9HCD5 579 aaKnown RBP18.58■□□□□ 0.57
HMGA1-204ENST00000401473 HOXC10Q9NYD6 342 aa18.58■□□□□ 0.57
HMGA1-204ENST00000401473 PPP1R9AQ9ULJ8 1098 aa18.58■□□□□ 0.57
HMGA1-204ENST00000401473 ADAMTS5Q9UNA0 930 aa18.58■□□□□ 0.57
HMGA1-204ENST00000401473 HTTP42858 3142 aa18.58■□□□□ 0.57
HMGA1-204ENST00000401473 PLEKHA8P1O95397 391 aa18.58■□□□□ 0.56
HMGA1-204ENST00000401473 ALDH1A1P00352 501 aa18.58■□□□□ 0.56
HMGA1-204ENST00000401473 OSBPP22059 807 aa18.58■□□□□ 0.56
HMGA1-204ENST00000401473 HERVK_113P62684 666 aa18.58■□□□□ 0.56
HMGA1-204ENST00000401473 SRBD1Q8N5C6 995 aaKnown RBP18.58■□□□□ 0.56
HMGA1-204ENST00000401473 CTCFLQ8NI51 663 aaPredicted RBP18.58■□□□□ 0.56
HMGA1-204ENST00000401473 KIFC2Q96AC6 838 aa18.58■□□□□ 0.56
HMGA1-204ENST00000401473 ATG4CQ96DT6 458 aa18.58■□□□□ 0.56
HMGA1-204ENST00000401473 BEGAINQ9BUH8 593 aa18.58■□□□□ 0.56
HMGA1-204ENST00000401473 PRR12Q9ULL5 1215 aa18.58■□□□□ 0.56
HMGA1-204ENST00000401473 ST18O60284 1047 aa18.57■□□□□ 0.56
HMGA1-204ENST00000401473 HSPA1AP0DMV8 641 aaKnown RBP18.57■□□□□ 0.56
HMGA1-204ENST00000401473 HSPA1BP0DMV9 641 aaKnown RBP18.57■□□□□ 0.56
HMGA1-204ENST00000401473 METAP2P50579 478 aaKnown RBP eCLIP18.57■□□□□ 0.563e-15■■■□□ 14.6
HMGA1-204ENST00000401473 RCAN1P53805 252 aa18.57■□□□□ 0.56
HMGA1-204ENST00000401473 CCDC82Q8N4S0 544 aa18.57■□□□□ 0.56
HMGA1-204ENST00000401473 CHURC1Q8WUH1 139 aa18.57■□□□□ 0.56
HMGA1-204ENST00000401473 SLF1Q9BQI6 1058 aa18.57■□□□□ 0.56
HMGA1-204ENST00000401473 LIMCH1Q9UPQ0 1083 aa18.57■□□□□ 0.56
HMGA1-204ENST00000401473 GOLGA8AA7E2F4 631 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 FOXN1O15353 648 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 SNAP25P60880 206 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 SCRN1Q12765 414 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 IKQ13123 557 aaPredicted RBP18.56■□□□□ 0.56
HMGA1-204ENST00000401473 ADGRF4Q8IZF3 695 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 CFHR5Q9BXR6 569 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 TXNRD2Q9NNW7 524 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 SAGE1Q9NXZ1 904 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 RBPJLQ9UBG7 517 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 PNMA3Q9UL41 463 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 COL11A1P12107 1806 aaPredicted RBP18.56■□□□□ 0.56
HMGA1-204ENST00000401473 VWA5AO00534 786 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 DTNBO60941 627 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 KIF5BP33176 963 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 FUT2Q10981 343 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 RTN1Q16799 776 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 LBX2Q6XYB7 198 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 FAM160B2Q86V87 743 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 NECAB1Q8N987 351 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 VAT1LQ9HCJ6 419 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 ADGRA2Q96PE1 1338 aa18.56■□□□□ 0.56
HMGA1-204ENST00000401473 TLR2O60603 784 aa18.55■□□□□ 0.56
HMGA1-204ENST00000401473 NTRK3Q16288 839 aa18.55■□□□□ 0.56
HMGA1-204ENST00000401473 Q3C1V9 767 aa18.55■□□□□ 0.56
HMGA1-204ENST00000401473 SYDE2Q5VT97 1194 aa18.55■□□□□ 0.56
HMGA1-204ENST00000401473 TMTC3Q6ZXV5 915 aa18.55■□□□□ 0.56
HMGA1-204ENST00000401473 SMCR8Q8TEV9 937 aaPredicted RBP18.55■□□□□ 0.56
HMGA1-204ENST00000401473 PARK7Q99497 189 aaKnown RBP18.55■□□□□ 0.56
HMGA1-204ENST00000401473 RIOX1Q9H6W3 641 aa18.55■□□□□ 0.56
HMGA1-204ENST00000401473 JMJD4Q9H9V9 463 aa18.55■□□□□ 0.56
HMGA1-204ENST00000401473 BTBD7Q9P203 1132 aa18.55■□□□□ 0.56
HMGA1-204ENST00000401473 NID2Q14112 1375 aa18.54■□□□□ 0.56
HMGA1-204ENST00000401473 MYPNQ86TC9 1320 aa18.54■□□□□ 0.56
HMGA1-204ENST00000401473 PFKFB2O60825 505 aa18.54■□□□□ 0.56
HMGA1-204ENST00000401473 PPFIA3O75145 1194 aa18.54■□□□□ 0.56
HMGA1-204ENST00000401473 ST3GAL1Q11201 340 aa18.54■□□□□ 0.56
HMGA1-204ENST00000401473 IL27Q8NEV9 243 aa18.54■□□□□ 0.56
HMGA1-204ENST00000401473 REPS2Q8NFH8 660 aa18.54■□□□□ 0.56
HMGA1-204ENST00000401473 SLKQ9H2G2 1235 aaPredicted RBP18.54■□□□□ 0.56
HMGA1-204ENST00000401473 SLC38A10Q9HBR0 1119 aa18.54■□□□□ 0.56
HMGA1-204ENST00000401473 ZFYVE28Q9HCC9 887 aa18.54■□□□□ 0.56
HMGA1-204ENST00000401473 CNMDO75829 334 aa18.54■□□□□ 0.56
HMGA1-204ENST00000401473 PPP2R5BQ15173 497 aa18.54■□□□□ 0.56
HMGA1-204ENST00000401473 C17orf99Q6UX52 265 aa18.54■□□□□ 0.56
HMGA1-204ENST00000401473 ANKRD13CQ8N6S4 541 aa18.54■□□□□ 0.56
HMGA1-204ENST00000401473 RBM28Q9NW13 759 aaKnown RBP18.54■□□□□ 0.56
HMGA1-204ENST00000401473 CPA4Q9UI42 421 aa18.54■□□□□ 0.56
HMGA1-204ENST00000401473 DOCK3Q8IZD9 2030 aa18.53■□□□□ 0.56
HMGA1-204ENST00000401473 MYH6P13533 1939 aa18.53■□□□□ 0.56
HMGA1-204ENST00000401473 TMEM132BQ14DG7 1078 aa18.53■□□□□ 0.56
HMGA1-204ENST00000401473 ZNF536O15090 1300 aa18.52■□□□□ 0.56
HMGA1-204ENST00000401473 hCG_1642624A0A1W2PR95 340 aa18.52■□□□□ 0.56
HMGA1-204ENST00000401473 SMARCA1P28370 1054 aa18.52■□□□□ 0.56
HMGA1-204ENST00000401473 GNAQP50148 359 aa18.52■□□□□ 0.56
HMGA1-204ENST00000401473 PIBF1Q8WXW3 757 aa18.52■□□□□ 0.56
HMGA1-204ENST00000401473 MTMR8Q96EF0 704 aa18.52■□□□□ 0.56
HMGA1-204ENST00000401473 TMX3Q96JJ7 454 aa18.52■□□□□ 0.56
HMGA1-204ENST00000401473 PAGR1Q9BTK6 254 aa18.52■□□□□ 0.56
HMGA1-204ENST00000401473 RANBP17Q9H2T7 1088 aaKnown RBP18.52■□□□□ 0.56
HMGA1-204ENST00000401473 ZNF214Q9UL59 606 aaPredicted RBP18.52■□□□□ 0.56
HMGA1-204ENST00000401473 CCDC196A0A1B0GTZ2 297 aa18.52■□□□□ 0.55
HMGA1-204ENST00000401473 CTDNEP1O95476 244 aa18.52■□□□□ 0.55
HMGA1-204ENST00000401473 HSPA8P11142 646 aaKnown RBP18.52■□□□□ 0.55
HMGA1-204ENST00000401473 BCRP11274 1271 aa18.52■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms