RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 RILPQ96NA2 401 aa10.54□□□□□ -0.72
SMAD9-203ENST00000399275 TRIM66O15016 1216 aa10.54□□□□□ -0.72
SMAD9-203ENST00000399275 CALM1P0DP23 149 aa10.54□□□□□ -0.72
SMAD9-203ENST00000399275 CALM2P0DP24 149 aa10.54□□□□□ -0.72
SMAD9-203ENST00000399275 CALM3P0DP25 149 aa10.54□□□□□ -0.72
SMAD9-203ENST00000399275 DDIT3P35638 169 aa10.54□□□□□ -0.72
SMAD9-203ENST00000399275 SLC8A3P57103 927 aa10.54□□□□□ -0.72
SMAD9-203ENST00000399275 CCDC144BQ3MJ40 725 aa10.54□□□□□ -0.72
SMAD9-203ENST00000399275 CHST3Q7LGC8 479 aa10.54□□□□□ -0.72
SMAD9-203ENST00000399275 PARP9Q8IXQ6 854 aa10.54□□□□□ -0.72
SMAD9-203ENST00000399275 FNBP4Q8N3X1 1017 aaPredicted RBP10.54□□□□□ -0.72
SMAD9-203ENST00000399275 STAMBPL1Q96FJ0 436 aa10.54□□□□□ -0.72
SMAD9-203ENST00000399275 USP28Q96RU2 1077 aa10.54□□□□□ -0.72
SMAD9-203ENST00000399275 CTNND2Q9UQB3 1225 aa10.54□□□□□ -0.72
SMAD9-203ENST00000399275 SNRPA1P09661 255 aaKnown RBP10.53□□□□□ -0.72
SMAD9-203ENST00000399275 PFKFB1P16118 471 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 PTH1RQ03431 593 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 TFCP2Q12800 502 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 TBC1D10BQ4KMP7 808 aaPredicted RBP10.53□□□□□ -0.72
SMAD9-203ENST00000399275 TMEM87BQ96K49 555 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 HAUS8Q9BT25 410 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 ADAM21Q9UKJ8 722 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 ATP11BQ9Y2G3 1177 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 SEMA3FQ13275 785 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 CYLC2Q14093 348 aaPredicted RBP10.53□□□□□ -0.72
SMAD9-203ENST00000399275 FBXO31Q5XUX0 539 aaPredicted RBP10.53□□□□□ -0.72
SMAD9-203ENST00000399275 ANKRD42Q8N9B4 389 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 B4GALNT2Q8NHY0 566 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 TLK1Q9UKI8 766 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 ATF3P18847 181 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 CCT6AP40227 531 aaKnown RBP10.53□□□□□ -0.72
SMAD9-203ENST00000399275 KMT5BQ4FZB7 885 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 TMED8Q6PL24 325 aaPredicted RBP10.53□□□□□ -0.72
SMAD9-203ENST00000399275 TBC1D1Q86TI0 1168 aaPredicted RBP10.53□□□□□ -0.72
SMAD9-203ENST00000399275 ESR2Q92731 530 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 TEKT1Q969V4 418 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 PHF23Q9BUL5 403 aaPredicted RBP10.53□□□□□ -0.72
SMAD9-203ENST00000399275 DSCC1Q9BVC3 393 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 C10orf88Q9H8K7 445 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 MMRN2Q9H8L6 949 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 SCHIP1Q9P0W5 487 aaPredicted RBP10.53□□□□□ -0.72
SMAD9-203ENST00000399275 DKK3Q9UBP4 350 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 ZDHHC9Q9Y397 364 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 CTIFO43310 598 aaKnown RBP10.53□□□□□ -0.72
SMAD9-203ENST00000399275 CETN1Q12798 172 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 C11orf57Q6ZUT1 292 aaPredicted RBP10.53□□□□□ -0.72
SMAD9-203ENST00000399275 KLC4Q9NSK0 619 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 CAPN9O14815 690 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 KRT4P19013 534 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 ADKP55263 362 aaKnown RBP10.53□□□□□ -0.72
SMAD9-203ENST00000399275 THOC1Q96FV9 657 aaKnown RBP10.53□□□□□ -0.72
SMAD9-203ENST00000399275 CCDC138Q96M89 665 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 RTEL1Q9NZ71 1219 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 TXNDC16Q9P2K2 825 aa10.53□□□□□ -0.72
SMAD9-203ENST00000399275 STXBP3O00186 592 aa10.52□□□□□ -0.72
SMAD9-203ENST00000399275 CCDC85AQ96PX6 553 aaPredicted RBP10.52□□□□□ -0.72
SMAD9-203ENST00000399275 PCDHA7Q9UN72 937 aa10.52□□□□□ -0.72
SMAD9-203ENST00000399275 SAMD9LQ8IVG5 1584 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 TMEM110-MUSTN1A8MSY1 372 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 STARD3NLO95772 234 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 PAK1Q13153 545 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 GLE1Q53GS7 698 aaKnown RBP10.52□□□□□ -0.73
SMAD9-203ENST00000399275 TNNI3KQ59H18 835 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 KLHL23Q8NBE8 558 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 BBOF1Q8ND07 529 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 RFWD2Q8NHY2 731 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 CEP19Q96LK0 163 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 NCOA5Q9HCD5 579 aaKnown RBP10.52□□□□□ -0.73
SMAD9-203ENST00000399275 TBC1D23Q9NUY8 699 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 FPGT-TNNI3KV9GXZ4 949 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 TRPM2O94759 1503 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 TBCAO75347 108 aaKnown RBP10.52□□□□□ -0.73
SMAD9-203ENST00000399275 CALML3P27482 149 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 KRT9P35527 623 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 XAGE3Q8WTP9 111 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 PARD6BQ9BYG5 372 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 EIF4E1BA6NMX2 242 aaKnown RBP10.52□□□□□ -0.73
SMAD9-203ENST00000399275 POLR2DO15514 142 aaKnown RBP10.52□□□□□ -0.73
SMAD9-203ENST00000399275 FOXO3O43524 673 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 TMCC1O94876 653 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 UAP1Q16222 522 aaPredicted RBP10.52□□□□□ -0.73
SMAD9-203ENST00000399275 DENND2CQ68D51 928 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 CCDC89Q8N998 374 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 MAP4K1Q92918 833 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 PPP1R14BQ96C90 147 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 ZBED2Q9BTP6 218 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 CARD9Q9H257 536 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 SPC25Q9HBM1 224 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 STRN4Q9NRL3 753 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 TXLNGQ9NUQ3 528 aa10.52□□□□□ -0.73
SMAD9-203ENST00000399275 VPS16Q9H269 839 aa10.51□□□□□ -0.73
SMAD9-203ENST00000399275 RCOR1Q9UKL0 485 aa10.51□□□□□ -0.73
SMAD9-203ENST00000399275 INTUQ9ULD6 942 aa10.51□□□□□ -0.73
SMAD9-203ENST00000399275 CEP55Q53EZ4 464 aa10.51□□□□□ -0.73
SMAD9-203ENST00000399275 LMBR1LQ6UX01 489 aa10.51□□□□□ -0.73
SMAD9-203ENST00000399275 UBE2Q1Q7Z7E8 422 aa10.51□□□□□ -0.73
SMAD9-203ENST00000399275 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.51□□□□□ -0.73
SMAD9-203ENST00000399275 HAUS4Q9H6D7 363 aa10.51□□□□□ -0.73
SMAD9-203ENST00000399275 ZNF229Q9UJW7 825 aa10.51□□□□□ -0.73
SMAD9-203ENST00000399275 ARHGEF10O15013 1369 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms