RNA–Protein interactions for RNA: ENST00000346436.10

CLCN6-202, Transcript of chloride voltage-gated channel 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN6, Length 5,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN6-202ENST00000346436 SYNRGQ9UMZ2 1314 aa12.09□□□□□ -0.47
CLCN6-202ENST00000346436 PLCD1P51178 756 aa12.08□□□□□ -0.47
CLCN6-202ENST00000346436 USH1GQ495M9 461 aa12.08□□□□□ -0.47
CLCN6-202ENST00000346436 SPATA31A3Q5VYP0 1347 aa12.08□□□□□ -0.47
CLCN6-202ENST00000346436 POTEB2H3BUK9 544 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 PPARDQ03181 441 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 FBXO41Q8TF61 875 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 FAM107BQ9H098 131 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 CLRN2A0PK11 232 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 TLR3O15455 904 aaKnown RBP12.08□□□□□ -0.48
CLCN6-202ENST00000346436 PRPF6O94906 941 aaKnown RBP12.08□□□□□ -0.48
CLCN6-202ENST00000346436 PDE6AP16499 860 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 CAPN2P17655 700 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 DNAJC21Q5F1R6 531 aaKnown RBP12.08□□□□□ -0.48
CLCN6-202ENST00000346436 FAM47AQ5JRC9 791 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 IQUBQ8NA54 791 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 RAB3IL1Q8TBN0 382 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 C21orf2O43822 256 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 HLTFQ14527 1009 aaKnown RBP eCLIP12.08□□□□□ -0.48
CLCN6-202ENST00000346436 CCDC144BQ3MJ40 725 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 SV2BQ7L1I2 683 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 CCDC155Q8N6L0 562 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 CDHR1Q96JP9 859 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 BTDP43251 543 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 CEP112Q8N8E3 955 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 ATP8A2Q9NTI2 1148 aa12.08□□□□□ -0.48
CLCN6-202ENST00000346436 NRXN1Q9ULB1 1477 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 RNASELQ05823 741 aaKnown RBP12.07□□□□□ -0.48
CLCN6-202ENST00000346436 LETM2Q2VYF4 491 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 KIAA1210Q9ULL0 1709 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 KIDINS220Q9ULH0 1771 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 ATP2A1O14983 1001 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 EPB41P11171 864 aaKnown RBP12.07□□□□□ -0.48
CLCN6-202ENST00000346436 GNAT1P11488 350 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 EEF2P13639 858 aaKnown RBP12.07□□□□□ -0.48
CLCN6-202ENST00000346436 EEF2KMTQ96G04 330 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 COA1Q9GZY4 146 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 INCENPQ9NQS7 918 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 HACL1Q9UJ83 578 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 RCOR1Q9UKL0 485 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 ATP1A3P13637 1013 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 CMA1P23946 247 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 AKNAD1Q5T1N1 836 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 CLEC4GQ6UXB4 293 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 IFNL3Q8IZI9 196 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 EXOC4Q96A65 974 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 PPP1R13BQ96KQ4 1090 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 MCM3P25205 808 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 COPB2P35606 906 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 MIER3Q7Z3K6 550 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 LMBR1Q8WVP7 490 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 GDAP1L1Q96MZ0 367 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 DBNDD1Q9H9R9 158 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 STIM2Q9P246 746 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 CCPG1Q9ULG6 757 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 ASAP1Q9ULH1 1129 aa12.07□□□□□ -0.48
CLCN6-202ENST00000346436 USP27XA6NNY8 438 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 ERVV-1B6SEH8 477 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 DAPK3O43293 454 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 PRPF4BQ13523 1007 aaKnown RBP12.06□□□□□ -0.48
CLCN6-202ENST00000346436 NBPF11Q86T75 865 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 LINC00301Q8NCQ3 95 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 MAK16Q9BXY0 300 aaKnown RBP12.06□□□□□ -0.48
CLCN6-202ENST00000346436 PCDHA5Q9Y5H7 936 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 PIK3C2BO00750 1634 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 ZMYM6O95789 1325 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 ARHGAP6O43182 974 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 VIMP08670 466 aaKnown RBP12.06□□□□□ -0.48
CLCN6-202ENST00000346436 MKRN3Q13064 507 aaKnown RBP12.06□□□□□ -0.48
CLCN6-202ENST00000346436 NONOQ15233 471 aaKnown RBP eCLIP12.06□□□□□ -0.48
CLCN6-202ENST00000346436 TTC38Q5R3I4 469 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 CCDC122Q5T0U0 273 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 PNMA8AQ86V59 439 aaPredicted RBP12.06□□□□□ -0.48
CLCN6-202ENST00000346436 NOSTRINQ8IVI9 506 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 EHBP1Q8NDI1 1231 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 SLF1Q9BQI6 1058 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 ZNF341Q9BYN7 854 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 LUC7L2Q9Y383 392 aaKnown RBP12.06□□□□□ -0.48
CLCN6-202ENST00000346436 ELF1P32519 619 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 CYLC1P35663 651 aaPredicted RBP12.06□□□□□ -0.48
CLCN6-202ENST00000346436 C1orf228Q6PIY5 440 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 KCNF1Q9H3M0 494 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 RABEP2Q9H5N1 569 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 ERBB3P21860 1342 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 FAM170AA1A519 330 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 ZBBXA8MT70 800 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 KIF28PB7ZC32 967 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 KIF11P52732 1056 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 VPS72Q15906 364 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 SYNE4Q8N205 404 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 DYDC1Q8WWB3 177 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 MYOM1P52179 1685 aa12.06□□□□□ -0.48
CLCN6-202ENST00000346436 SHTN1A0MZ66 631 aa12.05□□□□□ -0.48
CLCN6-202ENST00000346436 DDX39AO00148 427 aaKnown RBP12.05□□□□□ -0.48
CLCN6-202ENST00000346436 GAS7O60861 476 aa12.05□□□□□ -0.48
CLCN6-202ENST00000346436 STK10O94804 968 aaKnown RBP12.05□□□□□ -0.48
CLCN6-202ENST00000346436 SREBF2Q12772 1141 aa12.05□□□□□ -0.48
CLCN6-202ENST00000346436 GRAPQ13588 217 aa12.05□□□□□ -0.48
CLCN6-202ENST00000346436 SMYD4Q8IYR2 804 aaPredicted RBP12.05□□□□□ -0.48
CLCN6-202ENST00000346436 FNBP4Q8N3X1 1017 aaPredicted RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms