RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 METTL14Q9HCE5 456 aaKnown RBP7.69□□□□□ -1.18
SF3B1-201ENST00000335508 DNM2P50570 870 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 FAM26FQ5R3K3 315 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 NUCKS1Q9H1E3 243 aaKnown RBP7.69□□□□□ -1.18
SF3B1-201ENST00000335508 POTEB2H3BUK9 544 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 GTPBP6O43824 516 aaPredicted RBP7.68□□□□□ -1.18
SF3B1-201ENST00000335508 EVCP57679 992 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 PTGDRQ13258 359 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 FAM83AQ86UY5 434 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 ZFP91Q96JP5 570 aaPredicted RBP7.68□□□□□ -1.18
SF3B1-201ENST00000335508 FAM20AQ96MK3 541 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 C19orf81C9J6K1 198 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 M0R2C6 588 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 ZBTB5O15062 677 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 POLR2DO15514 142 aaKnown RBP7.68□□□□□ -1.18
SF3B1-201ENST00000335508 PTPREP23469 700 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 VWA3BQ502W6 1294 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 OTUD6AQ7L8S5 288 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 KIAA1328Q86T90 577 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 EXOC8Q8IYI6 725 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 ZMYND15Q9H091 742 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 PCDHA4Q9UN74 947 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 SLIT3O75094 1523 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 PRPHP41219 470 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 PDE4DQ08499 809 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 PDCL2Q8N4E4 241 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 CAGE1Q8TC20 777 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 PCDHA7Q9UN72 937 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 CHRNA5P30532 468 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 MATR3P43243 847 aaKnown RBP eCLIP7.68□□□□□ -1.184e-7■■■■□ 22.4
SF3B1-201ENST00000335508 TBC1D8BQ0IIM8 1120 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 RASA3Q14644 834 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 EAPPQ56P03 285 aaPredicted RBP7.68□□□□□ -1.18
SF3B1-201ENST00000335508 CTR9Q6PD62 1173 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 CCDC42Q96M95 316 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 EHD4Q9H223 541 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 RNF181Q9P0P0 153 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 KRT83P78385 493 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 SEPT2Q15019 361 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 PPP2R5AQ15172 486 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 PNMA8AQ86V59 439 aaPredicted RBP7.68□□□□□ -1.18
SF3B1-201ENST00000335508 PLA2G4DQ86XP0 818 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 TMEM87AQ8NBN3 555 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 KIFC2Q96AC6 838 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 PSMD1Q99460 953 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 MTMR4Q9NYA4 1195 aa7.68□□□□□ -1.18
SF3B1-201ENST00000335508 ERLIN2O94905 339 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 TROAPQ12815 778 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 CCDC181Q5TID7 509 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 CABP7Q86V35 215 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 TBC1D10CQ8IV04 446 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 NEK9Q8TD19 979 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 SLC10A4Q96EP9 437 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 BICD1Q96G01 975 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.67□□□□□ -1.18
SF3B1-201ENST00000335508 ITSN1Q15811 1721 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 ZNF609O15014 1411 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 IL1R1P14778 569 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 DDR1Q08345 913 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 RSBN1LQ6PCB5 846 aaPredicted RBP7.67□□□□□ -1.18
SF3B1-201ENST00000335508 FBXL16Q8N461 479 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 CSGALNACT2Q8N6G5 542 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 ZNF579Q8NAF0 562 aaKnown RBP7.67□□□□□ -1.18
SF3B1-201ENST00000335508 ZDHHC15Q96MV8 337 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 PCDHA5Q9Y5H7 936 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 XRCC6P12956 609 aaKnown RBP eCLIP7.67□□□□□ -1.186e-10■■■■■ 46
SF3B1-201ENST00000335508 FKBP1AP62942 108 aaKnown RBP7.67□□□□□ -1.18
SF3B1-201ENST00000335508 POSTNQ15063 836 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 PFKFB3Q16875 520 aaPredicted RBP7.67□□□□□ -1.18
SF3B1-201ENST00000335508 KRBA2Q6ZNG9 492 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 AOPEPQ8N6M6 819 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 DYNLL2Q96FJ2 89 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 RIOK1Q9BRS2 568 aaKnown RBP7.67□□□□□ -1.18
SF3B1-201ENST00000335508 NWD1Q149M9 1564 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 POLRMTO00411 1230 aaKnown RBP7.67□□□□□ -1.18
SF3B1-201ENST00000335508 PFKFB1P16118 471 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 DPEP1P16444 411 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 LMNB1P20700 586 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 EZH2Q15910 746 aaKnown RBP7.67□□□□□ -1.18
SF3B1-201ENST00000335508 GLG1Q92896 1179 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 VTI1AQ96AJ9 217 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 SYNPO2Q9UMS6 1093 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 C3P01024 1663 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 SPP2Q13103 211 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 GRM4Q14833 912 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 KIF4BQ2VIQ3 1234 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 TMC6Q7Z403 805 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 MSANTD4Q8NCY6 345 aa7.67□□□□□ -1.18
SF3B1-201ENST00000335508 ZNF277Q9NRM2 450 aaPredicted RBP7.67□□□□□ -1.18
SF3B1-201ENST00000335508 GOLGA8HP0CJ92 632 aa7.66□□□□□ -1.18
SF3B1-201ENST00000335508 SYDE2Q5VT97 1194 aa7.66□□□□□ -1.18
SF3B1-201ENST00000335508 CCDC186Q7Z3E2 898 aa7.66□□□□□ -1.18
SF3B1-201ENST00000335508 GTF3C2Q8WUA4 911 aaPredicted RBP7.66□□□□□ -1.18
SF3B1-201ENST00000335508 ALS2CR12Q96Q35 445 aa7.66□□□□□ -1.18
SF3B1-201ENST00000335508 TEX13BQ9BXU2 312 aa7.66□□□□□ -1.18
SF3B1-201ENST00000335508 NRBP2Q9NSY0 501 aa7.66□□□□□ -1.18
SF3B1-201ENST00000335508 CNOT7Q9UIV1 285 aaKnown RBP7.66□□□□□ -1.18
SF3B1-201ENST00000335508 ZKSCAN5Q9Y2L8 839 aa7.66□□□□□ -1.18
SF3B1-201ENST00000335508 CYP2D7A0A087X1C5 515 aa7.66□□□□□ -1.18
SF3B1-201ENST00000335508 WDR46O15213 610 aaKnown RBP7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms