RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 MKRN1Q9UHC7 482 aaKnown RBP18.2■□□□□ 0.5
USHBP1-202ENST00000324554 BBOX1O75936 387 aa18.19■□□□□ 0.5
USHBP1-202ENST00000324554 SEC31AO94979 1220 aaKnown RBP18.19■□□□□ 0.5
USHBP1-202ENST00000324554 DIXDC1Q155Q3 683 aa18.19■□□□□ 0.5
USHBP1-202ENST00000324554 TMCO3Q6UWJ1 677 aa18.19■□□□□ 0.5
USHBP1-202ENST00000324554 IQUBQ8NA54 791 aa18.19■□□□□ 0.5
USHBP1-202ENST00000324554 AKR1B15C9JRZ8 316 aaPredicted RBP18.19■□□□□ 0.5
USHBP1-202ENST00000324554 PPEF1O14829 653 aaPredicted RBP18.19■□□□□ 0.5
USHBP1-202ENST00000324554 ZBTB22O15209 634 aa18.19■□□□□ 0.5
USHBP1-202ENST00000324554 SRGNP10124 158 aa18.19■□□□□ 0.5
USHBP1-202ENST00000324554 HOXA10P31260 410 aaPredicted RBP18.19■□□□□ 0.5
USHBP1-202ENST00000324554 C12orf60Q5U649 245 aa18.19■□□□□ 0.5
USHBP1-202ENST00000324554 SPTY2D1Q68D10 685 aaPredicted RBP18.19■□□□□ 0.5
USHBP1-202ENST00000324554 PDXDC2PQ6P474 469 aa18.19■□□□□ 0.5
USHBP1-202ENST00000324554 TBC1D16Q8TBP0 767 aa18.19■□□□□ 0.5
USHBP1-202ENST00000324554 KAT14Q9H8E8 782 aa18.19■□□□□ 0.5
USHBP1-202ENST00000324554 IL17RBQ9NRM6 502 aa18.19■□□□□ 0.5
USHBP1-202ENST00000324554 ARGLU1Q9NWB6 273 aaPredicted RBP18.19■□□□□ 0.5
USHBP1-202ENST00000324554 ADD3Q9UEY8 706 aaKnown RBP18.19■□□□□ 0.5
USHBP1-202ENST00000324554 A0A0U1RQJ8 604 aa18.18■□□□□ 0.5
USHBP1-202ENST00000324554 PBX1P40424 430 aa18.18■□□□□ 0.5
USHBP1-202ENST00000324554 TFAP4Q01664 338 aa18.18■□□□□ 0.5
USHBP1-202ENST00000324554 RBL2Q08999 1139 aa18.18■□□□□ 0.5
USHBP1-202ENST00000324554 ZNF804AQ7Z570 1209 aa18.18■□□□□ 0.5
USHBP1-202ENST00000324554 ATRIPQ8WXE1 791 aa18.18■□□□□ 0.5
USHBP1-202ENST00000324554 ZNF622Q969S3 477 aaKnown RBP eCLIP18.18■□□□□ 0.5
USHBP1-202ENST00000324554 MTRQ99707 1265 aa18.18■□□□□ 0.5
USHBP1-202ENST00000324554 BLZF1Q9H2G9 400 aa18.18■□□□□ 0.5
USHBP1-202ENST00000324554 PPP2R3AQ06190 1150 aa18.18■□□□□ 0.5
USHBP1-202ENST00000324554 RAD9BQ6WBX8 426 aa18.18■□□□□ 0.5
USHBP1-202ENST00000324554 DGKHQ86XP1 1220 aa18.18■□□□□ 0.5
USHBP1-202ENST00000324554 CPLX3Q8WVH0 158 aa18.18■□□□□ 0.5
USHBP1-202ENST00000324554 PANX2Q96RD6 677 aa18.18■□□□□ 0.5
USHBP1-202ENST00000324554 FAM205AQ6ZU69 1335 aa18.17■□□□□ 0.5
USHBP1-202ENST00000324554 KLRG2A4D1S0 409 aaPredicted RBP18.17■□□□□ 0.5
USHBP1-202ENST00000324554 CALML3P27482 149 aa18.17■□□□□ 0.5
USHBP1-202ENST00000324554 BLIDQ8IZY5 108 aa18.17■□□□□ 0.5
USHBP1-202ENST00000324554 STAG2Q8N3U4 1231 aa18.17■□□□□ 0.5
USHBP1-202ENST00000324554 IGSF22Q8N9C0 903 aa18.17■□□□□ 0.5
USHBP1-202ENST00000324554 PNMA1Q8ND90 353 aa18.17■□□□□ 0.5
USHBP1-202ENST00000324554 GPKOWQ92917 476 aaPredicted RBP eCLIP18.17■□□□□ 0.5
USHBP1-202ENST00000324554 CAMKK2Q96RR4 588 aa18.17■□□□□ 0.5
USHBP1-202ENST00000324554 CTAGE1Q96RT6 745 aa18.17■□□□□ 0.5
USHBP1-202ENST00000324554 CRAMP1Q96RY5 1269 aa18.17■□□□□ 0.5
USHBP1-202ENST00000324554 PYM1Q9BRP8 204 aaKnown RBP18.17■□□□□ 0.5
USHBP1-202ENST00000324554 CD209Q9NNX6 404 aa18.17■□□□□ 0.5
USHBP1-202ENST00000324554 CTNND2Q9UQB3 1225 aa18.17■□□□□ 0.5
USHBP1-202ENST00000324554 COBLO75128 1261 aa18.17■□□□□ 0.5
USHBP1-202ENST00000324554 SLC15A2Q16348 729 aa18.17■□□□□ 0.5
USHBP1-202ENST00000324554 RSRC2Q7L4I2 434 aaKnown RBP18.17■□□□□ 0.5
USHBP1-202ENST00000324554 C4orf32Q8N8J7 132 aa18.17■□□□□ 0.5
USHBP1-202ENST00000324554 DYNLL2Q96FJ2 89 aa18.17■□□□□ 0.5
USHBP1-202ENST00000324554 ANKRD31Q8N7Z5 1873 aa18.16■□□□□ 0.5
USHBP1-202ENST00000324554 LDHBP07195 334 aaKnown RBP18.16■□□□□ 0.5
USHBP1-202ENST00000324554 USP5P45974 858 aa18.16■□□□□ 0.5
USHBP1-202ENST00000324554 ARL6IP4Q66PJ3 421 aaKnown RBP18.16■□□□□ 0.5
USHBP1-202ENST00000324554 SH3RF3Q8TEJ3 882 aaPredicted RBP18.16■□□□□ 0.5
USHBP1-202ENST00000324554 SH3GLB2Q9NR46 395 aa18.16■□□□□ 0.5
USHBP1-202ENST00000324554 TNS1Q9HBL0 1735 aaKnown RBP18.16■□□□□ 0.5
USHBP1-202ENST00000324554 CCDC175P0C221 793 aa18.15■□□□□ 0.5
USHBP1-202ENST00000324554 ATP2B4P23634 1241 aa18.15■□□□□ 0.5
USHBP1-202ENST00000324554 TEX35Q5T0J7 233 aa18.15■□□□□ 0.5
USHBP1-202ENST00000324554 FLAD1Q8NFF5 587 aa18.15■□□□□ 0.5
USHBP1-202ENST00000324554 ANKS1AQ92625 1134 aa18.15■□□□□ 0.5
USHBP1-202ENST00000324554 LZTFL1Q9NQ48 299 aa18.15■□□□□ 0.5
USHBP1-202ENST00000324554 PCDHA4Q9UN74 947 aa18.15■□□□□ 0.5
USHBP1-202ENST00000324554 ADGRG1Q9Y653 693 aa18.15■□□□□ 0.5
USHBP1-202ENST00000324554 ROBO3Q96MS0 1386 aa18.15■□□□□ 0.5
USHBP1-202ENST00000324554 GTPBP6O43824 516 aaPredicted RBP18.15■□□□□ 0.5
USHBP1-202ENST00000324554 SASH3O75995 380 aa18.15■□□□□ 0.5
USHBP1-202ENST00000324554 TPM1P09493 284 aa18.15■□□□□ 0.5
USHBP1-202ENST00000324554 NT5C2P49902 561 aa18.15■□□□□ 0.5
USHBP1-202ENST00000324554 TYW1BQ6NUM6 668 aa18.15■□□□□ 0.5
USHBP1-202ENST00000324554 CCDC12Q8WUD4 166 aaPredicted RBP18.15■□□□□ 0.5
USHBP1-202ENST00000324554 MAD2L2Q9UI95 211 aa18.15■□□□□ 0.5
USHBP1-202ENST00000324554 CHRNA5P30532 468 aa18.14■□□□□ 0.5
USHBP1-202ENST00000324554 LONP1P36776 959 aaKnown RBP18.14■□□□□ 0.5
USHBP1-202ENST00000324554 GRM4Q14833 912 aa18.14■□□□□ 0.5
USHBP1-202ENST00000324554 RRAGBQ5VZM2 374 aa18.14■□□□□ 0.5
USHBP1-202ENST00000324554 GPR161Q8N6U8 529 aaKnown RBP18.14■□□□□ 0.5
USHBP1-202ENST00000324554 WDR66Q8TBY9 1149 aa18.14■□□□□ 0.5
USHBP1-202ENST00000324554 RASGRP4Q8TDF6 673 aa18.14■□□□□ 0.5
USHBP1-202ENST00000324554 UTRNP46939 3433 aa18.14■□□□□ 0.49
USHBP1-202ENST00000324554 USP17L3A6NCW0 530 aa18.14■□□□□ 0.49
USHBP1-202ENST00000324554 USP17L4A6NCW7 530 aa18.14■□□□□ 0.49
USHBP1-202ENST00000324554 M0R2N6 131 aa18.14■□□□□ 0.49
USHBP1-202ENST00000324554 TBC1D8O95759 1140 aa18.14■□□□□ 0.49
USHBP1-202ENST00000324554 DOK7Q18PE1 504 aa18.14■□□□□ 0.49
USHBP1-202ENST00000324554 FILIP1LQ4L180 1135 aa18.14■□□□□ 0.49
USHBP1-202ENST00000324554 CC2D1AQ6P1N0 951 aaPredicted RBP18.14■□□□□ 0.49
USHBP1-202ENST00000324554 USP17L1Q7RTZ2 530 aa18.14■□□□□ 0.49
USHBP1-202ENST00000324554 PPFIBP1Q86W92 1011 aa18.14■□□□□ 0.49
USHBP1-202ENST00000324554 MFAP3LO75121 409 aa18.13■□□□□ 0.49
USHBP1-202ENST00000324554 CDC25AP30304 524 aa18.13■□□□□ 0.49
USHBP1-202ENST00000324554 CASP14P31944 242 aa18.13■□□□□ 0.49
USHBP1-202ENST00000324554 SLC35G1Q2M3R5 365 aa18.13■□□□□ 0.49
USHBP1-202ENST00000324554 NAA15Q9BXJ9 866 aaKnown RBP18.13■□□□□ 0.49
USHBP1-202ENST00000324554 MKNK2Q9HBH9 465 aa18.13■□□□□ 0.49
USHBP1-202ENST00000324554 RWDD2AQ9UIY3 292 aa18.13■□□□□ 0.49
USHBP1-202ENST00000324554 ATP6V0A2Q9Y487 856 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms