RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 PDE4BQ07343 736 aa26.33■■□□□ 1.81
VTI1B-201ENST00000216456 EXOC6Q8TAG9 804 aa26.33■■□□□ 1.81
VTI1B-201ENST00000216456 LENG1Q96BZ8 264 aaPredicted RBP26.33■■□□□ 1.81
VTI1B-201ENST00000216456 EVI5LQ96CN4 794 aa26.33■■□□□ 1.81
VTI1B-201ENST00000216456 PLIN4Q96Q06 1357 aa26.33■■□□□ 1.8
VTI1B-201ENST00000216456 SEPT4O43236 478 aa26.32■■□□□ 1.8
VTI1B-201ENST00000216456 MSCO60682 206 aa26.32■■□□□ 1.8
VTI1B-201ENST00000216456 KCTD2Q14681 263 aa26.32■■□□□ 1.8
VTI1B-201ENST00000216456 SLFN13Q68D06 897 aa26.32■■□□□ 1.8
VTI1B-201ENST00000216456 ZNF287Q9HBT7 754 aa26.32■■□□□ 1.8
VTI1B-201ENST00000216456 IL17RBQ9NRM6 502 aa26.32■■□□□ 1.8
VTI1B-201ENST00000216456 SLC5A4Q9NY91 659 aa26.32■■□□□ 1.8
VTI1B-201ENST00000216456 PRPF38AQ8NAV1 312 aaKnown RBP26.31■■□□□ 1.8
VTI1B-201ENST00000216456 TEX13BQ9BXU2 312 aa26.31■■□□□ 1.8
VTI1B-201ENST00000216456 DNM1LO00429 736 aa26.3■■□□□ 1.8
VTI1B-201ENST00000216456 MDM2Q00987 491 aaPredicted RBP26.3■■□□□ 1.8
VTI1B-201ENST00000216456 ZNF589Q86UQ0 364 aaPredicted RBP26.3■■□□□ 1.8
VTI1B-201ENST00000216456 GMCL1P1Q8NEA9 526 aa26.3■■□□□ 1.8
VTI1B-201ENST00000216456 TINF2Q9BSI4 451 aa26.3■■□□□ 1.8
VTI1B-201ENST00000216456 ISY1Q9ULR0 285 aaKnown RBP26.3■■□□□ 1.8
VTI1B-201ENST00000216456 SNAP25P60880 206 aa26.29■■□□□ 1.8
VTI1B-201ENST00000216456 NMIQ13287 307 aaPredicted RBP26.29■■□□□ 1.8
VTI1B-201ENST00000216456 FERMT2Q96AC1 680 aa26.29■■□□□ 1.8
VTI1B-201ENST00000216456 SLC38A10Q9HBR0 1119 aa26.29■■□□□ 1.8
VTI1B-201ENST00000216456 MTMR7Q9Y216 660 aa26.29■■□□□ 1.8
VTI1B-201ENST00000216456 TMEM232C9JQI7 657 aa26.28■■□□□ 1.8
VTI1B-201ENST00000216456 SLC3A2P08195 630 aaKnown RBP26.28■■□□□ 1.8
VTI1B-201ENST00000216456 BMP3P12645 472 aa26.28■■□□□ 1.8
VTI1B-201ENST00000216456 MCCP23508 829 aa26.28■■□□□ 1.8
VTI1B-201ENST00000216456 SMC5Q8IY18 1101 aa26.28■■□□□ 1.8
VTI1B-201ENST00000216456 TSPY2A6NKD2 308 aa26.27■■□□□ 1.8
VTI1B-201ENST00000216456 ZBED4O75132 1171 aa26.27■■□□□ 1.8
VTI1B-201ENST00000216456 ZNF865P0CJ78 1059 aaPredicted RBP26.27■■□□□ 1.8
VTI1B-201ENST00000216456 BMP8BP34820 402 aa26.27■■□□□ 1.8
VTI1B-201ENST00000216456 RTP1P59025 263 aa26.27■■□□□ 1.8
VTI1B-201ENST00000216456 LRRC41Q15345 812 aa26.27■■□□□ 1.8
VTI1B-201ENST00000216456 KCTD1Q719H9 257 aa26.27■■□□□ 1.8
VTI1B-201ENST00000216456 HELLSQ9NRZ9 838 aa26.27■■□□□ 1.8
VTI1B-201ENST00000216456 HOMER2Q9NSB8 354 aa26.27■■□□□ 1.8
VTI1B-201ENST00000216456 FEM1BQ9UK73 627 aa26.27■■□□□ 1.8
VTI1B-201ENST00000216456 STX8Q9UNK0 236 aa26.27■■□□□ 1.8
VTI1B-201ENST00000216456 PLXNA1Q9UIW2 1896 aa26.27■■□□□ 1.8
VTI1B-201ENST00000216456 SMCHD1A6NHR9 2005 aa26.27■■□□□ 1.8
VTI1B-201ENST00000216456 TRIM6-TRIM34B2RNG4 842 aa26.26■■□□□ 1.79
VTI1B-201ENST00000216456 RANBP6O60518 1105 aaKnown RBP26.26■■□□□ 1.79
VTI1B-201ENST00000216456 PGK1P00558 417 aa26.26■■□□□ 1.79
VTI1B-201ENST00000216456 FGAP02671 866 aa26.26■■□□□ 1.79
VTI1B-201ENST00000216456 ADCYAP1R1P41586 468 aa26.26■■□□□ 1.79
VTI1B-201ENST00000216456 RILPL2Q969X0 211 aa26.26■■□□□ 1.79
VTI1B-201ENST00000216456 FGD4Q96M96 766 aa26.26■■□□□ 1.79
VTI1B-201ENST00000216456 ATP11BQ9Y2G3 1177 aa26.26■■□□□ 1.79
VTI1B-201ENST00000216456 DNAJC25-GNG10A0A024R161 153 aa26.25■■□□□ 1.79
VTI1B-201ENST00000216456 A0A1W2PPC1 479 aa26.25■■□□□ 1.79
VTI1B-201ENST00000216456 SNAI1O95863 264 aaPredicted RBP26.25■■□□□ 1.79
VTI1B-201ENST00000216456 HAND2P61296 217 aa26.25■■□□□ 1.79
VTI1B-201ENST00000216456 IRX5P78411 483 aaPredicted RBP26.25■■□□□ 1.79
VTI1B-201ENST00000216456 MCMDC2Q4G0Z9 681 aa26.25■■□□□ 1.79
VTI1B-201ENST00000216456 ARRDC4Q8NCT1 418 aa26.25■■□□□ 1.79
VTI1B-201ENST00000216456 DDX11Q96FC9 970 aa26.25■■□□□ 1.79
VTI1B-201ENST00000216456 UBE2OQ9C0C9 1292 aaKnown RBP26.25■■□□□ 1.79
VTI1B-201ENST00000216456 DIS3Q9Y2L1 958 aaKnown RBP26.25■■□□□ 1.79
VTI1B-201ENST00000216456 CTDP1Q9Y5B0 961 aaPredicted RBP26.25■■□□□ 1.79
VTI1B-201ENST00000216456 KBTBD13C9JR72 458 aa26.24■■□□□ 1.79
VTI1B-201ENST00000216456 ATP2A1O14983 1001 aa26.24■■□□□ 1.79
VTI1B-201ENST00000216456 COPB2P35606 906 aa26.24■■□□□ 1.79
VTI1B-201ENST00000216456 RRP12Q5JTH9 1297 aaKnown RBP26.24■■□□□ 1.79
VTI1B-201ENST00000216456 SLC39A5Q6ZMH5 540 aa26.24■■□□□ 1.79
VTI1B-201ENST00000216456 PLEKHM2Q8IWE5 1019 aa26.24■■□□□ 1.79
VTI1B-201ENST00000216456 AGBL1Q96MI9 1066 aa26.24■■□□□ 1.79
VTI1B-201ENST00000216456 XPNPEP3Q9NQH7 507 aa26.24■■□□□ 1.79
VTI1B-201ENST00000216456 ANAPC4Q9UJX5 808 aa26.24■■□□□ 1.79
VTI1B-201ENST00000216456 DDX49Q9Y6V7 483 aaKnown RBP26.24■■□□□ 1.79
VTI1B-201ENST00000216456 ZNF536O15090 1300 aa26.23■■□□□ 1.79
VTI1B-201ENST00000216456 HSPD1P10809 573 aaKnown RBP26.23■■□□□ 1.79
VTI1B-201ENST00000216456 SLC1A4P43007 532 aa26.23■■□□□ 1.79
VTI1B-201ENST00000216456 ALX1Q15699 326 aa26.23■■□□□ 1.79
VTI1B-201ENST00000216456 CHD1LQ86WJ1 897 aa26.23■■□□□ 1.79
VTI1B-201ENST00000216456 RWDD1Q9H446 243 aaPredicted RBP26.23■■□□□ 1.79
VTI1B-201ENST00000216456 TOMM22Q9NS69 142 aa26.23■■□□□ 1.79
VTI1B-201ENST00000216456 SYNPO2Q9UMS6 1093 aa26.23■■□□□ 1.79
VTI1B-201ENST00000216456 IKQ13123 557 aaPredicted RBP26.22■■□□□ 1.79
VTI1B-201ENST00000216456 TRIM60Q495X7 471 aa26.22■■□□□ 1.79
VTI1B-201ENST00000216456 GMCL1Q96IK5 515 aa26.22■■□□□ 1.79
VTI1B-201ENST00000216456 ADCY6O43306 1168 aa26.21■■□□□ 1.79
VTI1B-201ENST00000216456 RARBP10826 455 aa26.21■■□□□ 1.79
VTI1B-201ENST00000216456 STAT2P52630 851 aa26.21■■□□□ 1.79
VTI1B-201ENST00000216456 CNTN2Q02246 1040 aa26.21■■□□□ 1.79
VTI1B-201ENST00000216456 NUCB1Q02818 461 aa26.21■■□□□ 1.79
VTI1B-201ENST00000216456 TTBK2Q6IQ55 1244 aa26.21■■□□□ 1.79
VTI1B-201ENST00000216456 CCDC174Q6PII3 467 aa26.21■■□□□ 1.79
VTI1B-201ENST00000216456 ANKRD35Q8N283 1001 aa26.21■■□□□ 1.79
VTI1B-201ENST00000216456 ZHX1Q9UKY1 873 aaPredicted RBP26.21■■□□□ 1.79
VTI1B-201ENST00000216456 ORC4O43929 436 aa26.2■■□□□ 1.78
VTI1B-201ENST00000216456 FGRP09769 529 aa26.2■■□□□ 1.78
VTI1B-201ENST00000216456 SH3RF1Q7Z6J0 888 aa26.2■■□□□ 1.78
VTI1B-201ENST00000216456 TDHQ8IZJ6 230 aa26.2■■□□□ 1.78
VTI1B-201ENST00000216456 STAG1Q8WVM7 1258 aa26.2■■□□□ 1.78
VTI1B-201ENST00000216456 NRBP1Q9UHY1 535 aa26.2■■□□□ 1.78
VTI1B-201ENST00000216456 CNPY2Q9Y2B0 182 aa26.2■■□□□ 1.78
VTI1B-201ENST00000216456 CCDC171Q6TFL3 1326 aa26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms