RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIP1	YMR309C	BOR1	P53838	576 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	TRS130	Q03660	1102 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	PIF1	P07271	859 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	YML003W	P0CF16	290 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	KRS1	P15180	591 aa	Known RBP	0.64	□□□□□ -2.31
NIP1	YMR309C	FRD1	P32614	470 aa	Known RBP	0.64	□□□□□ -2.31
NIP1	YMR309C	GRX7	P38068	203 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	SEC31	P38968	1273 aa	Known RBP	0.64	□□□□□ -2.31
NIP1	YMR309C	RPT2	P40327	437 aa	Known RBP	0.64	□□□□□ -2.31
NIP1	YMR309C	HIS6	P40545	261 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	SPG5	P42933	373 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	YTP1	P53584	459 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	ASI1	P54074	624 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	MLC2	Q06580	163 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	APL4	Q12028	832 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	NYV1	Q12255	253 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	ERG27	Q12452	347 aa	Known RBP	0.64	□□□□□ -2.31
NIP1	YMR309C	HXK2	P04807	486 aa	Known RBP	0.63	□□□□□ -2.31
NIP1	YMR309C	CHO1	P08456	276 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	PET111	P08468	800 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	PCT1	P13259	424 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	YEF3	P16521	1044 aa	Known RBP	0.63	□□□□□ -2.31
NIP1	YMR309C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	0.63	□□□□□ -2.31	not detected
NIP1	YMR309C	SPE2	P21182	396 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	LCB1	P25045	558 aa	Known RBP	0.63	□□□□□ -2.31
NIP1	YMR309C	STE50	P25344	346 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	GID7	P25569	745 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	NTR2	P36118	322 aa	Predicted RBP	0.63	□□□□□ -2.31
NIP1	YMR309C	ESL2	P36168	1195 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	YBP1	P38315	674 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	ERG7	P38604	731 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	LEU5	P38702	357 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	MDM31	P38880	579 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	DIM1	P41819	318 aa	Known RBP	0.63	□□□□□ -2.31
NIP1	YMR309C	YPI1	P43587	155 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	CTK2	P46962	323 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	ASE1	P50275	885 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	IMA1	P53051	589 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	CPR6	P53691	371 aa	Known RBP	0.63	□□□□□ -2.31
NIP1	YMR309C	YMR178W	Q03219	274 aa	Known RBP	0.63	□□□□□ -2.31
NIP1	YMR309C	YOL159C	Q08300	171 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	COX17	Q12287	69 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	GDH1	P07262	454 aa	Known RBP	0.63	□□□□□ -2.31
NIP1	YMR309C	NUC1	P08466	329 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	YSP3	P25036	478 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	RPS2	P25443	254 aa	Known RBP	0.63	□□□□□ -2.31
NIP1	YMR309C	PTP2	P29461	750 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	ERG1	P32476	496 aa	Known RBP	0.63	□□□□□ -2.31
NIP1	YMR309C	ECM10	P39987	644 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	BUD16	P39988	312 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	AXL1	P40851	1208 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	YFR020W	P43600	232 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	IKS1	P47042	667 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	YGL242C	P53066	181 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	COG1	P53079	417 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	IST1	P53843	298 aa	Predicted RBP	0.63	□□□□□ -2.31
NIP1	YMR309C	TDA7	P53882	636 aa	Predicted RBP	0.63	□□□□□ -2.31
NIP1	YMR309C	APJ1	P53940	528 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	MET14	Q02196	202 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	RSM28	Q03430	361 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	TMA64	Q04600	565 aa	Known RBP	0.63	□□□□□ -2.31
NIP1	YMR309C	FMP45	Q07651	309 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	TMA16	Q08687	178 aa		0.63	□□□□□ -2.31
NIP1	YMR309C	HXT1	P32465	570 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	YKL050C	P35736	922 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	PHD1	P36093	366 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	AAP1	P37898	856 aa	Known RBP	0.62	□□□□□ -2.31
NIP1	YMR309C	KTR3	P38130	404 aa	Predicted RBP	0.62	□□□□□ -2.31
NIP1	YMR309C	ROT2	P38138	954 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	YBR138C	P38277	524 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	UME6	P39001	836 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	SPC72	P39723	622 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	PUG1	P40100	303 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	PFK26	P40433	827 aa	Known RBP	0.62	□□□□□ -2.31
NIP1	YMR309C	YIL060W	P40519	144 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	HXT9	P40885	567 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	YJL213W	P40896	331 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	MOT3	P54785	490 aa	Known RBP	0.62	□□□□□ -2.31
NIP1	YMR309C	MSS11	Q03825	758 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	YEH2	Q07950	538 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	YLL056C	Q12177	298 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	YLR302C	O13544	120 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	TY2A-LR1	P0C2J4	438 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	TY2A-F	P0CX61	438 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	TY2A-GR2	P0CX62	438 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	BIK1	P11709	440 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	SEC62	P21825	274 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	CLB2	P24869	491 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	TY2A-C	P25383	438 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	ACH1	P32316	526 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	SRB5	P32585	307 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	PTR2	P32901	601 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	LOS1	P33418	1100 aa	Predicted RBP	0.62	□□□□□ -2.31
NIP1	YMR309C	TEF4	P36008	412 aa	Known RBP	0.62	□□□□□ -2.31
NIP1	YMR309C	RTS1	P38903	757 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	RGI2	P40188	164 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	IST3	P40565	148 aa	Predicted RBP	0.62	□□□□□ -2.31
NIP1	YMR309C	FET5	P43561	622 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	YJL132W	P47014	750 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	SMC3	P47037	1230 aa		0.62	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 21.3 ms